Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57908 * 2 1 4 4 O 1.42102 * 108.57695 * 228.97843 * 2 1 3 5 5 C 1.81391 * 101.92097 * 114.49046 * 2 1 3 6 6 C 1.53008 * 109.47017 * 179.97438 * 5 2 1 7 7 H 1.08989 * 109.55630 * 304.87477 * 6 5 2 8 8 C 1.53294 * 109.51004 * 184.74660 * 6 5 2 9 9 N 1.47153 * 108.38272 * 187.77923 * 8 6 5 10 10 C 1.34778 * 120.98024 * 230.51349 * 9 8 6 11 11 O 1.21693 * 119.99965 * 355.26876 * 10 9 8 12 12 C 1.46381 * 120.00083 * 175.26546 * 10 9 8 13 13 H 1.08001 * 119.99779 * 7.85288 * 12 10 9 14 14 C 1.40044 * 119.99807 * 187.85466 * 12 10 9 15 15 N 1.30674 * 120.00489 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99639 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47103 * 59.99832 * 16 14 12 18 18 H 1.48504 * 109.47071 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46900 * 299.99655 * 16 14 12 20 20 C 1.47152 * 118.03981 * 50.53151 * 9 8 6 21 21 C 1.53295 * 108.38430 * 309.47092 * 20 9 8 22 22 O 1.42957 * 109.22200 * 52.29629 * 21 20 9 23 23 H 1.09003 * 109.47099 * 305.51067 * 1 2 3 24 24 H 1.09000 * 109.46990 * 65.51113 * 1 2 3 25 25 H 1.09003 * 109.47083 * 185.50435 * 1 2 3 26 26 H 1.09003 * 109.47225 * 60.00091 * 5 2 1 27 27 H 1.08997 * 109.47390 * 300.00099 * 5 2 1 28 28 H 1.08993 * 109.68731 * 68.05480 * 8 6 5 29 29 H 1.08998 * 109.71455 * 307.51202 * 8 6 5 30 30 H 0.96993 * 119.99884 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.68126 * 189.74221 * 20 9 8 32 32 H 1.09003 * 109.70800 * 69.20742 * 20 9 8 33 33 H 1.09007 * 109.51169 * 292.37697 * 21 20 9 34 34 H 1.08996 * 109.55700 * 172.24898 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7978 7 1 4.1440 -1.3652 0.9623 8 6 4.0238 -1.5481 3.1085 9 7 5.4715 -1.4512 3.3535 10 6 6.2019 -2.5475 3.6383 11 8 5.6530 -3.6242 3.7808 12 6 7.6555 -2.4432 3.7760 13 1 8.1296 -1.4728 3.7760 14 6 8.4313 -3.6017 3.9077 15 7 7.8576 -4.7757 3.9081 16 14 10.2862 -3.4684 4.0842 17 1 10.6124 -2.6782 5.2984 18 1 10.8707 -4.8280 4.2072 19 1 10.8500 -2.7932 2.8878 20 6 6.0983 -0.1219 3.2790 21 6 5.6788 0.5371 1.9600 22 8 4.2542 0.4995 1.8473 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0230 0.0986 26 1 1.7610 -1.7370 1.6663 27 1 1.7610 -0.1172 2.4042 28 1 3.7348 -2.5958 3.0258 29 1 3.4805 -1.0811 3.9300 30 1 8.3950 -5.5780 3.9990 31 1 7.1829 -0.2252 3.3092 32 1 5.7643 0.4896 4.1173 33 1 6.1245 -0.0036 1.1250 34 1 6.0180 1.5729 1.9455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333586120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -138.337373 kcal Electronic energy + Delta-G solvation = -20267.095477 eV Core-core repulsion = 16907.256139 eV Total energy + Delta-G solvation = -3359.839338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.29461 -36.94159 -36.80609 -35.96107 -33.47972 -33.05188 -32.45409 -29.85226 -28.32251 -27.27860 -25.13196 -22.92331 -21.22566 -19.35456 -18.79366 -16.89777 -16.68413 -16.62195 -16.09119 -15.85980 -15.62192 -14.79154 -14.49706 -14.29711 -14.19056 -13.58075 -13.47476 -13.40290 -12.83709 -12.57067 -12.22915 -12.01218 -11.93625 -11.70024 -11.57072 -11.37615 -11.12515 -11.00936 -10.93824 -10.65068 -10.32122 -10.24728 -10.11019 -9.58148 -8.91905 -7.71140 -7.34567 -6.28719 -4.73981 -0.08951 2.70099 3.11373 3.16626 3.18066 3.53928 3.72100 3.99993 4.01058 4.31209 4.46153 4.58446 4.61896 4.80740 4.96318 5.21917 5.34584 5.40835 5.47802 5.54074 5.63909 5.83752 5.90163 6.02868 6.27150 6.30656 6.48951 7.31891 7.37379 7.41971 7.99518 8.21934 8.93363 9.28587 10.46353 10.65144 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.036176 B = 0.004470 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.802925 B = 6262.146677 C = 6527.607871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.425 3.575 3 O -0.922 6.922 4 O -0.941 6.941 5 C -0.602 4.602 6 C 0.087 3.913 7 H 0.076 0.924 8 C 0.104 3.896 9 N -0.646 5.646 10 C 0.560 3.440 11 O -0.576 6.576 12 C -0.545 4.545 13 H 0.074 0.926 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.086 3.914 21 C 0.047 3.953 22 O -0.379 6.379 23 H 0.127 0.873 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.270 0.730 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 9.797 -4.799 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.606 3.394 3 O -0.919 6.919 4 O -0.938 6.938 5 C -0.730 4.730 6 C 0.027 3.973 7 H 0.094 0.906 8 C -0.022 4.022 9 N -0.385 5.385 10 C 0.367 3.633 11 O -0.458 6.458 12 C -0.581 4.581 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.038 4.038 21 C -0.030 4.030 22 O -0.299 6.299 23 H 0.146 0.854 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.163 0.837 27 H 0.159 0.841 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.086 9.426 -5.363 15.508 hybrid contribution 0.366 -0.361 0.774 0.929 sum -10.720 9.065 -4.590 14.770 Atomic orbital electron populations 1.30356 1.27844 1.11364 1.11515 1.07820 0.77836 0.76144 0.77619 1.93607 1.78242 1.33966 1.86100 1.93603 1.78933 1.67317 1.53965 1.30301 1.04118 1.14567 1.24054 1.22033 0.88735 0.85960 1.00609 0.90565 1.21691 0.85112 1.01503 0.93880 1.48342 1.05833 1.07601 1.76759 1.18304 0.87661 0.81084 0.76300 1.90593 1.72687 1.27006 1.55535 1.20905 0.89818 0.93628 1.53747 0.90839 1.25731 1.00210 0.94761 0.92532 1.69986 1.36651 0.98178 1.34763 0.86406 0.82616 0.78062 0.79555 1.19183 1.20480 1.19159 1.22134 1.00705 0.85080 0.95902 1.23106 0.80191 1.01646 0.98098 1.87927 1.21786 1.25381 1.94772 0.85429 0.85502 0.85480 0.83684 0.84075 0.88777 0.92795 0.91874 0.87798 0.92932 0.92538 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.97 10.62 101.05 1.07 -2.90 16 2 S 2.43 26.34 5.29 -107.50 -0.57 25.77 16 3 O -0.92 -13.51 17.32 -62.42 -1.08 -14.59 16 4 O -0.94 -13.98 18.10 -57.83 -1.05 -15.02 16 5 C -0.60 -6.44 5.50 37.16 0.20 -6.24 16 6 C 0.09 1.41 2.77 -26.57 -0.07 1.34 16 7 H 0.08 1.33 8.14 -51.94 -0.42 0.91 16 8 C 0.10 1.99 5.91 -3.53 -0.02 1.97 16 9 N -0.65 -14.64 3.02 -173.94 -0.53 -15.17 16 10 C 0.56 15.73 7.62 -12.98 -0.10 15.63 16 11 O -0.58 -18.30 14.56 5.20 0.08 -18.23 16 12 C -0.54 -14.94 8.86 -35.63 -0.32 -15.26 16 13 H 0.07 1.81 5.73 -52.49 -0.30 1.51 16 14 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 15 N -0.77 -22.57 11.86 55.55 0.66 -21.91 16 16 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C 0.09 1.60 6.55 -3.53 -0.02 1.57 16 21 C 0.05 0.76 6.98 37.31 0.26 1.02 16 22 O -0.38 -6.44 9.47 -43.23 -0.41 -6.85 16 23 H 0.13 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.15 1.14 8.14 -51.92 -0.42 0.72 16 27 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.94 7.12 -51.93 -0.37 1.57 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 31 H 0.10 1.94 5.41 -51.93 -0.28 1.66 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -39.64 298.78 -6.82 -46.46 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.31 Total: 0.96 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.91 Total: -0.55 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.13 Total: -37.08 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.46 Total: -54.69 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 26.34 SS G_CDS: -0.57 Total: 25.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -39.64 -6.82 -46.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.878 kcal (2) G-P(sol) polarization free energy of solvation -39.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds