Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42099 * 108.57908 * 2 1 4 4 O 1.42102 * 108.57695 * 228.97843 * 2 1 3 5 5 C 1.81391 * 101.92097 * 114.49046 * 2 1 3 6 6 C 1.53008 * 109.47017 * 179.97438 * 5 2 1 7 7 H 1.08989 * 109.55630 * 304.87477 * 6 5 2 8 8 C 1.53294 * 109.51004 * 184.74660 * 6 5 2 9 9 N 1.47153 * 108.38272 * 187.77923 * 8 6 5 10 10 C 1.34778 * 120.98024 * 230.51349 * 9 8 6 11 11 O 1.21693 * 119.99965 * 355.26876 * 10 9 8 12 12 C 1.46381 * 120.00083 * 175.26546 * 10 9 8 13 13 H 1.08001 * 119.99779 * 7.85288 * 12 10 9 14 14 C 1.40044 * 119.99807 * 187.85466 * 12 10 9 15 15 N 1.30674 * 120.00489 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99639 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47103 * 59.99832 * 16 14 12 18 18 H 1.48504 * 109.47071 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46900 * 299.99655 * 16 14 12 20 20 C 1.47152 * 118.03981 * 50.53151 * 9 8 6 21 21 C 1.53295 * 108.38430 * 309.47092 * 20 9 8 22 22 O 1.42957 * 109.22200 * 52.29629 * 21 20 9 23 23 H 1.09003 * 109.47099 * 305.51067 * 1 2 3 24 24 H 1.09000 * 109.46990 * 65.51113 * 1 2 3 25 25 H 1.09003 * 109.47083 * 185.50435 * 1 2 3 26 26 H 1.09003 * 109.47225 * 60.00091 * 5 2 1 27 27 H 1.08997 * 109.47390 * 300.00099 * 5 2 1 28 28 H 1.08993 * 109.68731 * 68.05480 * 8 6 5 29 29 H 1.08998 * 109.71455 * 307.51202 * 8 6 5 30 30 H 0.96993 * 119.99884 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.68126 * 189.74221 * 20 9 8 32 32 H 1.09003 * 109.70800 * 69.20742 * 20 9 8 33 33 H 1.09007 * 109.51169 * 292.37697 * 21 20 9 34 34 H 1.08996 * 109.55700 * 172.24898 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7978 7 1 4.1440 -1.3652 0.9623 8 6 4.0238 -1.5481 3.1085 9 7 5.4715 -1.4512 3.3535 10 6 6.2019 -2.5475 3.6383 11 8 5.6530 -3.6242 3.7808 12 6 7.6555 -2.4432 3.7760 13 1 8.1296 -1.4728 3.7760 14 6 8.4313 -3.6017 3.9077 15 7 7.8576 -4.7757 3.9081 16 14 10.2862 -3.4684 4.0842 17 1 10.6124 -2.6782 5.2984 18 1 10.8707 -4.8280 4.2072 19 1 10.8500 -2.7932 2.8878 20 6 6.0983 -0.1219 3.2790 21 6 5.6788 0.5371 1.9600 22 8 4.2542 0.4995 1.8473 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0230 0.0986 26 1 1.7610 -1.7370 1.6663 27 1 1.7610 -0.1172 2.4042 28 1 3.7348 -2.5958 3.0258 29 1 3.4805 -1.0811 3.9300 30 1 8.3950 -5.5780 3.9990 31 1 7.1829 -0.2252 3.3092 32 1 5.7643 0.4896 4.1173 33 1 6.1245 -0.0036 1.1250 34 1 6.0180 1.5729 1.9455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333586120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -171.923753 kcal Electronic energy + Delta-G solvation = -20268.551891 eV Core-core repulsion = 16907.256139 eV Total energy + Delta-G solvation = -3361.295753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82606 -38.70250 -37.91184 -36.93342 -35.28488 -34.71436 -34.11331 -30.48114 -29.57837 -29.18672 -26.83471 -24.32889 -22.79142 -21.08628 -19.73095 -18.66754 -17.96749 -17.79718 -17.59174 -17.08443 -16.64141 -16.41907 -16.06644 -15.88341 -15.56935 -15.23992 -14.40911 -14.01476 -13.91550 -13.83800 -13.67589 -13.43592 -13.23764 -13.08908 -12.99860 -12.92813 -12.72716 -12.41735 -12.14637 -12.06299 -11.96450 -11.74164 -11.39314 -11.07984 -10.93381 -9.86421 -9.15429 -8.33782 -6.88965 -0.89669 1.39517 1.42474 1.54299 1.92522 2.19971 2.40588 2.47242 2.58629 2.90228 3.21018 3.51352 3.68120 3.74187 3.88663 4.10021 4.15843 4.21150 4.28524 4.38305 4.39272 4.61739 4.66367 4.79895 4.85343 5.00966 5.02088 5.34144 5.63390 5.97635 6.05338 6.26633 6.83532 7.30048 8.37952 8.61712 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.036176 B = 0.004470 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.802925 B = 6262.146677 C = 6527.607871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.422 3.578 3 O -0.968 6.968 4 O -0.994 6.994 5 C -0.601 4.601 6 C 0.085 3.915 7 H 0.051 0.949 8 C 0.099 3.901 9 N -0.654 5.654 10 C 0.541 3.459 11 O -0.629 6.629 12 C -0.570 4.570 13 H 0.097 0.903 14 C 0.030 3.970 15 N -0.822 5.822 16 Si 0.997 3.003 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.253 1.253 20 C 0.083 3.917 21 C 0.047 3.953 22 O -0.379 6.379 23 H 0.158 0.842 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.173 0.827 27 H 0.174 0.826 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.275 0.725 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 11.733 -4.567 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.609 3.391 3 O -0.966 6.966 4 O -0.991 6.991 5 C -0.729 4.729 6 C 0.025 3.975 7 H 0.069 0.931 8 C -0.025 4.025 9 N -0.391 5.391 10 C 0.348 3.652 11 O -0.516 6.516 12 C -0.606 4.606 13 H 0.114 0.886 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.816 3.184 17 H -0.177 1.177 18 H -0.200 1.200 19 H -0.177 1.177 20 C -0.040 4.040 21 C -0.030 4.030 22 O -0.298 6.298 23 H 0.177 0.823 24 H 0.159 0.841 25 H 0.173 0.827 26 H 0.191 0.809 27 H 0.192 0.808 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.904 11.431 -5.147 17.288 hybrid contribution 0.462 -0.922 0.714 1.254 sum -11.442 10.509 -4.433 16.156 Atomic orbital electron populations 1.30058 1.20272 1.14142 1.13759 1.07511 0.80564 0.74415 0.76651 1.93548 1.80974 1.35603 1.86431 1.93540 1.81679 1.68098 1.55816 1.30349 1.00006 1.17214 1.25312 1.21985 0.92490 0.85212 0.97802 0.93079 1.21886 0.83348 1.00928 0.96387 1.48220 1.07321 1.07993 1.75595 1.18708 0.88691 0.81636 0.76179 1.90536 1.73798 1.29390 1.57887 1.21469 0.90192 0.95111 1.53859 0.88564 1.27001 1.06462 0.93900 0.91211 1.70162 1.39371 0.99426 1.36183 0.85079 0.74552 0.78417 0.80347 1.17682 1.20023 1.17666 1.22342 1.00382 0.83295 0.97974 1.23206 0.80167 1.03405 0.96215 1.87950 1.21899 1.25486 1.94500 0.82331 0.84101 0.82725 0.80898 0.80848 0.91124 0.90630 0.91487 0.88264 0.90937 0.93774 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.62 10.62 113.37 1.20 -3.41 16 2 S 2.42 49.13 5.29 -56.49 -0.30 48.83 16 3 O -0.97 -27.55 17.32 -122.99 -2.13 -29.68 16 4 O -0.99 -29.83 18.10 -127.37 -2.31 -32.14 16 5 C -0.60 -11.68 5.50 71.98 0.40 -11.29 16 6 C 0.08 2.76 2.77 30.70 0.09 2.85 16 7 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 8 C 0.10 3.86 5.91 86.35 0.51 4.37 16 9 N -0.65 -30.26 3.02 -822.43 -2.48 -32.75 16 10 C 0.54 31.58 7.62 86.36 0.66 32.24 16 11 O -0.63 -42.13 14.56 -4.33 -0.06 -42.19 16 12 C -0.57 -31.89 8.86 24.83 0.22 -31.67 16 13 H 0.10 4.74 5.73 -2.91 -0.02 4.72 16 14 C 0.03 1.63 5.50 85.30 0.47 2.10 16 15 N -0.82 -50.10 11.86 21.83 0.26 -49.84 16 16 Si 1.00 40.35 29.56 68.60 2.03 42.38 16 17 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 18 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 20 C 0.08 3.03 6.55 86.35 0.57 3.59 16 21 C 0.05 1.49 6.98 72.08 0.50 2.00 16 22 O -0.38 -12.51 9.47 -141.33 -1.34 -13.85 16 23 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.17 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.17 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 3.05 7.12 -2.39 -0.02 3.04 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.28 15.23 8.29 -92.71 -0.77 14.46 16 31 H 0.10 3.66 5.41 -2.39 -0.01 3.65 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.14 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -92.23 298.78 -0.61 -92.84 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.11 Total: 15.62 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 4.61 Total: 0.77 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.22 Total: -82.59 kcal Atomic # 8 Polarization: -112.02 SS G_CDS: -5.84 Total: -117.86 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 49.13 SS G_CDS: -0.30 Total: 48.83 kcal Total: -92.23 -0.61 -92.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333586120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.081 kcal (2) G-P(sol) polarization free energy of solvation -92.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds