Wall clock time and date at job start Mon Mar 30 2020 01:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42892 * 114.00368 * 2 1 4 4 C 1.50703 * 112.49552 * 296.50844 * 3 2 1 5 5 O 1.21287 * 120.00178 * 134.94426 * 4 3 2 6 6 N 1.34778 * 119.99943 * 314.66727 * 4 3 2 7 7 C 1.46504 * 119.99923 * 175.30196 * 6 4 3 8 8 H 1.09002 * 109.46621 * 35.01034 * 7 6 4 9 9 C 1.52991 * 109.47486 * 275.00587 * 7 6 4 10 10 C 1.50704 * 109.46626 * 155.00183 * 7 6 4 11 11 H 1.07992 * 120.00247 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99391 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00403 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99554 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47017 * 90.00079 * 14 12 10 16 16 H 1.48508 * 109.46915 * 210.00007 * 14 12 10 17 17 H 1.48503 * 109.47200 * 329.99981 * 14 12 10 18 18 C 1.53042 * 113.19175 * 66.32878 * 3 2 1 19 19 S 1.81424 * 89.89001 * 82.36719 * 18 3 2 20 20 O 1.42097 * 112.75318 * 280.47343 * 19 18 3 21 21 O 1.42096 * 112.75275 * 136.72886 * 19 18 3 22 22 C 1.53038 * 113.15557 * 166.72532 * 3 2 1 23 23 H 1.08992 * 109.47605 * 175.28124 * 1 2 3 24 24 H 1.09005 * 109.46786 * 295.28312 * 1 2 3 25 25 H 1.09000 * 109.47197 * 55.27292 * 1 2 3 26 26 H 0.96998 * 119.99712 * 355.31397 * 6 4 3 27 27 H 1.09005 * 109.47516 * 60.00190 * 9 7 6 28 28 H 1.08995 * 109.47135 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47280 * 300.00349 * 9 7 6 30 30 H 0.97001 * 119.99792 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.14474 * 197.62315 * 18 3 2 32 32 H 1.08992 * 113.14631 * 327.10432 * 18 3 2 33 33 H 1.09000 * 113.14711 * 32.85409 * 22 3 2 34 34 H 1.08997 * 113.15434 * 162.34029 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 1.6771 2.0849 -1.2460 5 8 1.3299 3.2439 -1.1615 6 7 1.7703 1.4957 -2.4546 7 6 1.3487 2.2193 -3.6567 8 1 1.5828 3.2779 -3.5443 9 6 -0.1590 2.0482 -3.8525 10 6 2.0768 1.6684 -4.8557 11 1 2.7825 0.8600 -4.7345 12 6 1.8417 2.1966 -6.1074 13 7 0.9826 3.1815 -6.2550 14 14 2.7436 1.5134 -7.5938 15 1 1.9530 0.4045 -8.1859 16 1 2.9208 2.5887 -8.6026 17 1 4.0740 1.0039 -7.1745 18 6 1.7395 2.0857 1.2884 19 16 3.1196 1.2271 2.0943 20 8 2.7743 -0.0807 2.5296 21 8 3.9316 2.0985 2.8693 22 6 3.5061 1.2980 0.3231 23 1 -0.3634 -1.0241 -0.0845 24 1 -0.3633 0.4389 0.9293 25 1 -0.3633 0.5854 -0.8446 26 1 2.1164 0.5926 -2.5284 27 1 -0.6856 2.4467 -2.9852 28 1 -0.4725 2.5862 -4.7471 29 1 -0.3930 0.9896 -3.9648 30 1 0.8176 3.5532 -7.1356 31 1 1.9049 3.1579 1.1827 32 1 0.7721 1.8544 1.7340 33 1 4.0184 0.4069 -0.0396 34 1 4.0121 2.2183 0.0315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341723312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:00 Heat of formation + Delta-G solvation = -117.484019 kcal Electronic energy + Delta-G solvation = -20507.827023 eV Core-core repulsion = 17148.891954 eV Total energy + Delta-G solvation = -3358.935069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27895 -37.81774 -37.25066 -36.20736 -35.13086 -34.07483 -32.45478 -29.14631 -27.44745 -26.30195 -25.37883 -24.10987 -20.78534 -19.57543 -19.01573 -18.27151 -16.82304 -16.66545 -16.27960 -16.07780 -15.40102 -15.32869 -15.16530 -14.75442 -14.11836 -13.62633 -13.29609 -13.12002 -12.84837 -12.54163 -12.35774 -12.33546 -12.04775 -11.76417 -11.43882 -11.22663 -11.13291 -11.02404 -10.86077 -10.52197 -10.43643 -10.37735 -10.29754 -9.15044 -9.05368 -8.64558 -8.06948 -6.20074 -4.29698 -0.02574 1.76333 2.91691 3.11577 3.20131 3.27215 3.29237 3.44357 3.73251 4.01963 4.16349 4.31096 4.64161 4.96531 5.01068 5.12562 5.22855 5.27130 5.40402 5.55636 5.60327 5.72586 6.66152 6.71321 6.81708 7.01040 7.27738 7.43329 7.59921 7.79007 8.03887 8.49008 8.65407 8.90989 9.37826 10.85946 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.004707 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.675093 B = 5947.500237 C = 6113.012078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.110 3.890 4 C 0.508 3.492 5 O -0.541 6.541 6 N -0.691 5.691 7 C 0.261 3.739 8 H 0.051 0.949 9 C -0.147 4.147 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.884 5.884 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.611 4.611 19 S 2.420 3.580 20 O -0.899 6.899 21 O -0.925 6.925 22 C -0.583 4.583 23 H 0.099 0.901 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.395 0.605 27 H 0.012 0.988 28 H 0.093 0.907 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.165 0.835 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 -5.534 13.369 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.266 6.266 3 C 0.064 3.936 4 C 0.289 3.711 5 O -0.419 6.419 6 N -0.339 5.339 7 C 0.160 3.840 8 H 0.069 0.931 9 C -0.206 4.206 10 C -0.573 4.573 11 H 0.081 0.919 12 C -0.136 4.136 13 N -0.521 5.521 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.740 4.740 19 S 2.600 3.400 20 O -0.896 6.896 21 O -0.922 6.922 22 C -0.710 4.710 23 H 0.117 0.883 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.228 0.772 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.183 0.817 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.486 -5.133 14.309 15.274 hybrid contribution -0.126 -0.250 -2.058 2.077 sum 1.360 -5.383 12.251 13.450 Atomic orbital electron populations 1.22955 0.79259 1.03870 1.01179 1.87989 1.21386 1.22518 1.94699 1.21341 0.92821 0.84886 0.94591 1.19915 0.79246 0.87320 0.84631 1.90682 1.48257 1.16476 1.86508 1.46525 1.61851 1.18737 1.06754 1.18852 0.91761 0.93592 0.79820 0.93086 1.22096 0.97722 0.99581 1.01169 1.21188 1.24847 1.19782 0.91520 0.91947 1.24888 0.95090 0.94708 0.98964 1.69894 1.33779 1.24631 1.23788 0.86419 0.79972 0.78608 0.81934 1.20490 1.21028 1.19815 1.31476 1.20830 1.14510 1.07136 1.08186 0.78913 0.75984 0.76945 1.93721 1.81707 1.34722 1.79439 1.93645 1.64667 1.66071 1.67812 1.31022 0.99977 1.12795 1.27219 0.88262 0.93367 0.92551 0.77179 0.96886 0.88898 0.95260 0.92487 0.81716 0.85093 0.83987 0.82170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.62 101.05 1.07 1.35 16 2 O -0.35 -4.71 9.77 -40.88 -0.40 -5.11 16 3 C 0.11 1.53 0.95 -91.73 -0.09 1.44 16 4 C 0.51 9.53 5.92 -10.98 -0.06 9.47 16 5 O -0.54 -11.96 15.55 5.55 0.09 -11.88 16 6 N -0.69 -13.89 5.02 -54.93 -0.28 -14.16 16 7 C 0.26 6.41 2.60 -69.08 -0.18 6.23 16 8 H 0.05 1.45 7.51 -51.93 -0.39 1.06 16 9 C -0.15 -3.50 9.26 37.15 0.34 -3.16 16 10 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 13 N -0.88 -24.28 11.32 55.43 0.63 -23.66 16 14 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 C -0.61 -6.87 6.80 37.18 0.25 -6.62 16 19 S 2.42 24.59 7.48 -107.50 -0.80 23.78 16 20 O -0.90 -11.35 17.65 -61.43 -1.08 -12.44 16 21 O -0.92 -11.64 18.18 -57.30 -1.04 -12.69 16 22 C -0.58 -6.30 7.29 37.18 0.27 -6.03 16 23 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.49 6.82 -51.93 -0.35 0.13 16 25 H 0.06 0.78 7.28 -51.93 -0.38 0.40 16 26 H 0.40 7.13 8.47 -40.82 -0.35 6.78 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.16 1.87 7.51 -51.93 -0.39 1.48 16 32 H 0.13 1.22 6.73 -51.93 -0.35 0.87 16 33 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.16 1.61 8.11 -51.93 -0.42 1.19 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -33.99 300.42 -6.35 -40.34 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.18 Total: 5.83 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 1.21 Total: -9.76 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.35 Total: -37.82 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.44 Total: -42.11 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 24.59 SS G_CDS: -0.80 Total: 23.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.99 -6.35 -40.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.149 kcal (2) G-P(sol) polarization free energy of solvation -33.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds