Wall clock time and date at job start Mon Mar 30 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42892 * 114.00368 * 2 1 4 4 C 1.50703 * 112.49552 * 296.50844 * 3 2 1 5 5 O 1.21287 * 120.00178 * 134.94426 * 4 3 2 6 6 N 1.34778 * 119.99943 * 314.66727 * 4 3 2 7 7 C 1.46504 * 119.99923 * 175.30196 * 6 4 3 8 8 H 1.09002 * 109.46621 * 35.01034 * 7 6 4 9 9 C 1.52991 * 109.47486 * 275.00587 * 7 6 4 10 10 C 1.50704 * 109.46626 * 155.00183 * 7 6 4 11 11 H 1.07992 * 120.00247 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99391 * 180.02562 * 10 7 6 13 13 N 1.31519 * 120.00403 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99554 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47017 * 90.00079 * 14 12 10 16 16 H 1.48508 * 109.46915 * 210.00007 * 14 12 10 17 17 H 1.48503 * 109.47200 * 329.99981 * 14 12 10 18 18 C 1.53042 * 113.19175 * 66.32878 * 3 2 1 19 19 S 1.81424 * 89.89001 * 82.36719 * 18 3 2 20 20 O 1.42097 * 112.75318 * 280.47343 * 19 18 3 21 21 O 1.42096 * 112.75275 * 136.72886 * 19 18 3 22 22 C 1.53038 * 113.15557 * 166.72532 * 3 2 1 23 23 H 1.08992 * 109.47605 * 175.28124 * 1 2 3 24 24 H 1.09005 * 109.46786 * 295.28312 * 1 2 3 25 25 H 1.09000 * 109.47197 * 55.27292 * 1 2 3 26 26 H 0.96998 * 119.99712 * 355.31397 * 6 4 3 27 27 H 1.09005 * 109.47516 * 60.00190 * 9 7 6 28 28 H 1.08995 * 109.47135 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47280 * 300.00349 * 9 7 6 30 30 H 0.97001 * 119.99792 * 179.97438 * 13 12 10 31 31 H 1.09006 * 113.14474 * 197.62315 * 18 3 2 32 32 H 1.08992 * 113.14631 * 327.10432 * 18 3 2 33 33 H 1.09000 * 113.14711 * 32.85409 * 22 3 2 34 34 H 1.08997 * 113.15434 * 162.34029 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 1.6771 2.0849 -1.2460 5 8 1.3299 3.2439 -1.1615 6 7 1.7703 1.4957 -2.4546 7 6 1.3487 2.2193 -3.6567 8 1 1.5828 3.2779 -3.5443 9 6 -0.1590 2.0482 -3.8525 10 6 2.0768 1.6684 -4.8557 11 1 2.7825 0.8600 -4.7345 12 6 1.8417 2.1966 -6.1074 13 7 0.9826 3.1815 -6.2550 14 14 2.7436 1.5134 -7.5938 15 1 1.9530 0.4045 -8.1859 16 1 2.9208 2.5887 -8.6026 17 1 4.0740 1.0039 -7.1745 18 6 1.7395 2.0857 1.2884 19 16 3.1196 1.2271 2.0943 20 8 2.7743 -0.0807 2.5296 21 8 3.9316 2.0985 2.8693 22 6 3.5061 1.2980 0.3231 23 1 -0.3634 -1.0241 -0.0845 24 1 -0.3633 0.4389 0.9293 25 1 -0.3633 0.5854 -0.8446 26 1 2.1164 0.5926 -2.5284 27 1 -0.6856 2.4467 -2.9852 28 1 -0.4725 2.5862 -4.7471 29 1 -0.3930 0.9896 -3.9648 30 1 0.8176 3.5532 -7.1356 31 1 1.9049 3.1579 1.1827 32 1 0.7721 1.8544 1.7340 33 1 4.0184 0.4069 -0.0396 34 1 4.0121 2.2183 0.0315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341723312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:59 Heat of formation + Delta-G solvation = -145.904278 kcal Electronic energy + Delta-G solvation = -20509.059418 eV Core-core repulsion = 17148.891954 eV Total energy + Delta-G solvation = -3360.167464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56833 -39.13086 -38.26379 -37.17700 -36.86938 -35.16543 -34.33718 -30.99848 -28.38981 -27.39159 -27.20425 -25.53192 -22.48151 -21.10379 -19.94977 -19.60757 -18.10520 -17.79892 -17.61265 -17.10957 -16.99990 -16.47667 -16.27856 -16.21923 -15.63603 -15.09252 -14.60917 -14.44719 -14.14926 -13.76518 -13.74337 -13.31892 -13.30769 -13.07369 -13.00601 -12.82632 -12.71575 -12.51665 -12.32521 -12.21067 -12.15216 -11.47874 -11.43677 -11.13601 -10.65211 -10.47667 -9.83390 -8.20142 -6.37510 -0.91700 0.88398 1.44246 1.45074 1.50481 1.55560 2.08796 2.27494 2.45699 2.64074 3.04062 3.10567 3.15178 3.58770 3.85561 4.11640 4.22004 4.36229 4.42151 4.69405 4.70570 4.74862 4.83852 4.86938 5.03837 5.37378 5.53170 5.59558 5.70469 5.86690 6.05811 6.68920 6.82828 7.25595 7.40853 8.85971 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.004707 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.675093 B = 5947.500237 C = 6113.012078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.348 6.348 3 C 0.104 3.896 4 C 0.507 3.493 5 O -0.580 6.580 6 N -0.691 5.691 7 C 0.267 3.733 8 H 0.004 0.996 9 C -0.133 4.133 10 C -0.548 4.548 11 H 0.072 0.928 12 C 0.017 3.983 13 N -0.916 5.916 14 Si 0.972 3.028 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.617 4.617 19 S 2.480 3.520 20 O -0.914 6.914 21 O -0.942 6.942 22 C -0.585 4.585 23 H 0.123 0.877 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.406 0.594 27 H 0.013 0.987 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.183 -7.248 14.156 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.266 6.266 3 C 0.058 3.942 4 C 0.290 3.710 5 O -0.460 6.460 6 N -0.339 5.339 7 C 0.164 3.836 8 H 0.022 0.978 9 C -0.192 4.192 10 C -0.586 4.586 11 H 0.090 0.910 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.744 4.744 19 S 2.659 3.341 20 O -0.912 6.912 21 O -0.939 6.939 22 C -0.712 4.712 23 H 0.141 0.859 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.242 0.758 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.359 -6.877 15.120 16.777 hybrid contribution -0.435 0.311 -2.263 2.326 sum 1.924 -6.566 12.856 14.564 Atomic orbital electron populations 1.23186 0.78610 1.05248 1.01257 1.88008 1.22173 1.21874 1.94568 1.21267 0.95159 0.85011 0.92731 1.20730 0.77632 0.87127 0.85525 1.90658 1.49611 1.18517 1.87261 1.46282 1.62340 1.19005 1.06280 1.18443 0.92098 0.91499 0.81547 0.97821 1.21900 0.97441 0.99865 0.99979 1.21514 1.25057 1.19955 0.92063 0.90992 1.25764 0.95779 0.94885 1.01921 1.70038 1.35123 1.25867 1.24418 0.85352 0.79016 0.77861 0.78146 1.19676 1.21212 1.18913 1.31563 1.22811 1.14265 1.05777 1.06528 0.77398 0.74551 0.75657 1.93695 1.81897 1.35766 1.79815 1.93621 1.65181 1.66714 1.68405 1.31130 0.98106 1.14365 1.27621 0.85896 0.91304 0.94934 0.75831 0.96753 0.91350 0.94004 0.92490 0.81944 0.83141 0.81790 0.81490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 10.62 113.37 1.20 1.48 16 2 O -0.35 -8.66 9.77 -143.58 -1.40 -10.06 16 3 C 0.10 2.74 0.95 -11.51 -0.01 2.73 16 4 C 0.51 18.97 5.92 87.66 0.52 19.49 16 5 O -0.58 -26.22 15.55 -3.05 -0.05 -26.27 16 6 N -0.69 -27.80 5.02 -446.08 -2.24 -30.04 16 7 C 0.27 13.44 2.60 44.24 0.12 13.56 16 8 H 0.00 0.23 7.51 -2.39 -0.02 0.21 16 9 C -0.13 -6.49 9.26 71.98 0.67 -5.82 16 10 C -0.55 -28.34 8.73 25.60 0.22 -28.11 16 11 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 12 C 0.02 0.88 5.30 84.65 0.45 1.33 16 13 N -0.92 -51.39 11.32 21.45 0.24 -51.14 16 14 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 15 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 18 C -0.62 -12.76 6.80 72.00 0.49 -12.27 16 19 S 2.48 44.26 7.48 -56.49 -0.42 43.84 16 20 O -0.91 -20.47 17.65 -123.93 -2.19 -22.66 16 21 O -0.94 -21.56 18.18 -127.88 -2.32 -23.88 16 22 C -0.59 -11.35 7.29 71.99 0.52 -10.83 16 23 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.07 1.22 6.82 -2.38 -0.02 1.21 16 25 H 0.03 0.87 7.28 -2.39 -0.02 0.86 16 26 H 0.41 14.35 8.47 -92.71 -0.79 13.56 16 27 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.16 3.52 7.51 -2.38 -0.02 3.51 16 32 H 0.15 2.45 6.73 -2.39 -0.02 2.44 16 33 H 0.16 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.17 3.06 8.11 -2.39 -0.02 3.04 16 Total: -1.00 -73.24 300.42 -1.83 -75.07 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.35 Total: 20.39 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.18 Total: -18.45 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.00 Total: -81.18 kcal Atomic # 8 Polarization: -76.91 SS G_CDS: -5.96 Total: -82.87 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 44.26 SS G_CDS: -0.42 Total: 43.84 kcal Total: -73.24 -1.83 -75.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.837 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds