Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99928 * 2 1 4 4 C 1.50700 * 112.49797 * 293.56885 * 3 2 1 5 5 O 1.21288 * 120.00257 * 140.91282 * 4 3 2 6 6 N 1.34774 * 119.99960 * 320.91460 * 4 3 2 7 7 C 1.46500 * 119.99996 * 174.98872 * 6 4 3 8 8 H 1.09001 * 109.47363 * 324.99518 * 7 6 4 9 9 C 1.52997 * 109.47482 * 84.99833 * 7 6 4 10 10 C 1.50701 * 109.46927 * 204.99814 * 7 6 4 11 11 H 1.07990 * 120.00211 * 0.02562 * 10 7 6 12 12 C 1.37887 * 119.99748 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00080 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99847 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47190 * 59.99896 * 14 12 10 16 16 H 1.48496 * 109.47236 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46977 * 300.00221 * 14 12 10 18 18 C 1.53046 * 113.15655 * 163.72684 * 3 2 1 19 19 S 1.81418 * 89.89462 * 211.85555 * 18 3 2 20 20 O 1.42098 * 112.75330 * 280.47584 * 19 18 3 21 21 O 1.42099 * 112.75396 * 136.72373 * 19 18 3 22 22 C 1.53048 * 113.15234 * 63.35470 * 3 2 1 23 23 H 1.09006 * 109.47144 * 55.01005 * 1 2 3 24 24 H 1.08991 * 109.47140 * 295.00554 * 1 2 3 25 25 H 1.09004 * 109.46563 * 175.00417 * 1 2 3 26 26 H 0.96994 * 119.99983 * 354.98688 * 6 4 3 27 27 H 1.08999 * 109.47457 * 59.99884 * 9 7 6 28 28 H 1.09003 * 109.47510 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47161 * 299.99819 * 9 7 6 30 30 H 0.96994 * 119.99756 * 180.02562 * 13 12 10 31 31 H 1.09003 * 113.14062 * 327.11461 * 18 3 2 32 32 H 1.09000 * 113.14983 * 96.58862 * 18 3 2 33 33 H 1.08999 * 113.14594 * 263.40861 * 22 3 2 34 34 H 1.08997 * 113.14710 * 32.88311 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7361 2.0586 -1.2762 5 8 1.4916 3.2460 -1.2390 6 7 1.7627 1.4128 -2.4588 7 6 1.3893 2.1184 -3.6872 8 1 0.5925 2.8297 -3.4699 9 6 2.6058 2.8671 -4.2353 10 6 0.9086 1.1232 -4.7117 11 1 0.8832 0.0706 -4.4716 12 6 0.5000 1.5567 -5.9552 13 7 0.5303 2.8387 -6.2474 14 14 -0.0966 0.3233 -7.2248 15 1 -1.2773 -0.4033 -6.6924 16 1 -0.4750 1.0384 -8.4701 17 1 0.9887 -0.6460 -7.5215 18 6 3.4890 1.3058 0.3943 19 16 3.2855 2.9458 1.1428 20 8 3.2937 3.9931 0.1824 21 8 3.9364 3.0605 2.4007 22 6 1.6784 2.1118 1.2578 23 1 -0.3634 0.5893 -0.8420 24 1 -0.3633 0.4344 0.9313 25 1 -0.3632 -1.0238 -0.0895 26 1 2.0291 0.4810 -2.4966 27 1 3.4026 2.1559 -4.4527 28 1 2.3279 3.3924 -5.1490 29 1 2.9536 3.5869 -3.4943 30 1 0.2426 3.1436 -7.1220 31 1 3.7391 0.5317 1.1199 32 1 4.1613 1.3067 -0.4637 33 1 0.8341 2.7879 1.1229 34 1 1.5795 1.4932 2.1497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341723313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = -112.465535 kcal Electronic energy + Delta-G solvation = -20783.505954 eV Core-core repulsion = 17424.788503 eV Total energy + Delta-G solvation = -3358.717451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28567 -37.57912 -37.17848 -36.02231 -35.14375 -34.03857 -32.42313 -29.07098 -27.32576 -26.29691 -25.29020 -23.95600 -20.78274 -19.60533 -18.78807 -18.16000 -16.84659 -16.72512 -16.15580 -15.72791 -15.46066 -15.06954 -14.96463 -14.59849 -14.10343 -13.85413 -13.51551 -12.97054 -12.65184 -12.44412 -12.18112 -12.13261 -11.93785 -11.72874 -11.32844 -11.13921 -11.03390 -10.97538 -10.74732 -10.43964 -10.37423 -10.26932 -10.25802 -9.14034 -9.02530 -8.59362 -8.02308 -6.16184 -4.26297 0.07030 1.89988 2.90934 3.22746 3.27942 3.28837 3.33711 3.46443 3.73217 4.02311 4.29913 4.44311 4.64465 4.99358 5.08451 5.16179 5.27296 5.33853 5.43212 5.54054 5.59523 5.75842 6.76525 6.82976 6.96681 7.11191 7.35177 7.47160 7.63485 7.85574 8.10339 8.50445 8.66980 8.93019 9.40853 10.89566 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.005447 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.438216 B = 5139.195822 C = 5714.581483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.345 6.345 3 C 0.120 3.880 4 C 0.476 3.524 5 O -0.511 6.511 6 N -0.688 5.688 7 C 0.264 3.736 8 H 0.049 0.951 9 C -0.151 4.151 10 C -0.537 4.537 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.882 5.882 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.595 4.595 19 S 2.423 3.577 20 O -0.866 6.866 21 O -0.928 6.928 22 C -0.622 4.622 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.395 0.605 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -4.829 13.790 14.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.263 6.263 3 C 0.074 3.926 4 C 0.256 3.744 5 O -0.388 6.388 6 N -0.336 5.336 7 C 0.163 3.837 8 H 0.067 0.933 9 C -0.209 4.209 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.519 5.519 14 Si 0.730 3.270 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.722 4.722 19 S 2.599 3.401 20 O -0.863 6.863 21 O -0.925 6.925 22 C -0.750 4.750 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.228 0.772 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.444 -3.003 13.864 14.597 hybrid contribution -1.054 -2.114 -1.066 2.591 sum 2.390 -5.116 12.798 13.988 Atomic orbital electron populations 1.22911 0.79848 1.03447 1.01188 1.87934 1.20723 1.22959 1.94701 1.21718 0.92612 0.85910 0.92345 1.20245 0.80777 0.87993 0.85361 1.90842 1.47923 1.13534 1.86512 1.46464 1.64816 1.15104 1.07188 1.18848 0.93858 0.92140 0.78819 0.93270 1.22098 0.97659 0.98992 1.02178 1.21161 1.44986 0.93394 0.97955 0.92046 1.24885 0.95186 0.95437 0.98111 1.69893 1.46298 1.13424 1.22306 0.86489 0.79182 0.80892 0.80406 1.20198 1.21100 1.20125 1.31210 1.00134 1.26417 1.14421 1.07977 0.79220 0.77035 0.75834 1.93872 1.83577 1.49020 1.59868 1.93641 1.71495 1.87103 1.40237 1.31440 1.25938 1.13084 1.04543 0.92586 0.93485 0.88884 0.77186 0.95432 0.89037 0.95903 0.92433 0.82494 0.84788 0.84336 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.60 101.05 1.07 1.35 16 2 O -0.35 -4.76 10.28 -35.23 -0.36 -5.12 16 3 C 0.12 1.71 1.12 -91.72 -0.10 1.61 16 4 C 0.48 9.12 5.62 -10.99 -0.06 9.05 16 5 O -0.51 -11.45 13.24 -17.49 -0.23 -11.68 16 6 N -0.69 -14.13 4.99 -54.93 -0.27 -14.40 16 7 C 0.26 6.62 2.52 -69.08 -0.17 6.44 16 8 H 0.05 1.40 7.65 -51.93 -0.40 1.00 16 9 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 10 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 13 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 14 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 C -0.60 -6.60 7.35 37.18 0.27 -6.33 16 19 S 2.42 29.55 7.41 -107.50 -0.80 28.76 16 20 O -0.87 -14.80 15.41 -66.65 -1.03 -15.83 16 21 O -0.93 -12.41 18.18 -57.30 -1.04 -13.45 16 22 C -0.62 -7.09 6.14 37.18 0.23 -6.86 16 23 H 0.06 0.82 7.37 -51.93 -0.38 0.44 16 24 H 0.05 0.49 7.62 -51.93 -0.40 0.10 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.39 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.02 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.16 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.13 1.42 8.12 -51.93 -0.42 0.99 16 33 H 0.14 1.61 7.76 -51.93 -0.40 1.20 16 34 H 0.15 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -34.03 297.94 -6.76 -40.79 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.31 Total: 5.72 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 1.18 Total: -10.70 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.35 Total: -38.30 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -2.66 Total: -46.07 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -0.80 Total: 28.76 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.03 -6.76 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.676 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds