Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99928 * 2 1 4 4 C 1.50700 * 112.49797 * 293.56885 * 3 2 1 5 5 O 1.21288 * 120.00257 * 140.91282 * 4 3 2 6 6 N 1.34774 * 119.99960 * 320.91460 * 4 3 2 7 7 C 1.46500 * 119.99996 * 174.98872 * 6 4 3 8 8 H 1.09001 * 109.47363 * 324.99518 * 7 6 4 9 9 C 1.52997 * 109.47482 * 84.99833 * 7 6 4 10 10 C 1.50701 * 109.46927 * 204.99814 * 7 6 4 11 11 H 1.07990 * 120.00211 * 0.02562 * 10 7 6 12 12 C 1.37887 * 119.99748 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00080 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99847 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47190 * 59.99896 * 14 12 10 16 16 H 1.48496 * 109.47236 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46977 * 300.00221 * 14 12 10 18 18 C 1.53046 * 113.15655 * 163.72684 * 3 2 1 19 19 S 1.81418 * 89.89462 * 211.85555 * 18 3 2 20 20 O 1.42098 * 112.75330 * 280.47584 * 19 18 3 21 21 O 1.42099 * 112.75396 * 136.72373 * 19 18 3 22 22 C 1.53048 * 113.15234 * 63.35470 * 3 2 1 23 23 H 1.09006 * 109.47144 * 55.01005 * 1 2 3 24 24 H 1.08991 * 109.47140 * 295.00554 * 1 2 3 25 25 H 1.09004 * 109.46563 * 175.00417 * 1 2 3 26 26 H 0.96994 * 119.99983 * 354.98688 * 6 4 3 27 27 H 1.08999 * 109.47457 * 59.99884 * 9 7 6 28 28 H 1.09003 * 109.47510 * 180.02562 * 9 7 6 29 29 H 1.09002 * 109.47161 * 299.99819 * 9 7 6 30 30 H 0.96994 * 119.99756 * 180.02562 * 13 12 10 31 31 H 1.09003 * 113.14062 * 327.11461 * 18 3 2 32 32 H 1.09000 * 113.14983 * 96.58862 * 18 3 2 33 33 H 1.08999 * 113.14594 * 263.40861 * 22 3 2 34 34 H 1.08997 * 113.14710 * 32.88311 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7361 2.0586 -1.2762 5 8 1.4916 3.2460 -1.2390 6 7 1.7627 1.4128 -2.4588 7 6 1.3893 2.1184 -3.6872 8 1 0.5925 2.8297 -3.4699 9 6 2.6058 2.8671 -4.2353 10 6 0.9086 1.1232 -4.7117 11 1 0.8832 0.0706 -4.4716 12 6 0.5000 1.5567 -5.9552 13 7 0.5303 2.8387 -6.2474 14 14 -0.0966 0.3233 -7.2248 15 1 -1.2773 -0.4033 -6.6924 16 1 -0.4750 1.0384 -8.4701 17 1 0.9887 -0.6460 -7.5215 18 6 3.4890 1.3058 0.3943 19 16 3.2855 2.9458 1.1428 20 8 3.2937 3.9931 0.1824 21 8 3.9364 3.0605 2.4007 22 6 1.6784 2.1118 1.2578 23 1 -0.3634 0.5893 -0.8420 24 1 -0.3633 0.4344 0.9313 25 1 -0.3632 -1.0238 -0.0895 26 1 2.0291 0.4810 -2.4966 27 1 3.4026 2.1559 -4.4527 28 1 2.3279 3.3924 -5.1490 29 1 2.9536 3.5869 -3.4943 30 1 0.2426 3.1436 -7.1220 31 1 3.7391 0.5317 1.1199 32 1 4.1613 1.3067 -0.4637 33 1 0.8341 2.7879 1.1229 34 1 1.5795 1.4932 2.1497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341723313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = -140.504009 kcal Electronic energy + Delta-G solvation = -20784.721793 eV Core-core repulsion = 17424.788503 eV Total energy + Delta-G solvation = -3359.933290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62965 -38.89022 -38.31582 -37.12177 -36.87398 -35.21166 -34.32375 -30.97318 -28.30027 -27.34818 -27.23970 -25.39712 -22.51200 -21.12012 -20.03712 -19.34432 -18.30606 -17.78983 -17.55298 -17.12453 -16.83945 -16.53595 -16.10581 -16.01802 -15.43903 -15.33828 -14.80024 -14.40787 -14.01727 -13.85072 -13.60870 -13.29549 -13.22134 -13.01630 -12.90968 -12.85363 -12.73785 -12.43355 -12.27767 -12.16013 -12.05097 -11.42487 -11.39346 -11.14231 -10.64369 -10.47040 -9.81568 -8.18399 -6.36498 -0.92566 0.93996 1.44003 1.45984 1.47642 1.54931 2.09292 2.35582 2.43245 2.64920 3.02720 3.11943 3.36583 3.57287 3.63860 4.19980 4.31227 4.45004 4.46583 4.67120 4.71852 4.73501 4.82645 4.94548 5.07872 5.39209 5.55327 5.61665 5.74682 5.89110 6.07327 6.69757 6.80046 7.25712 7.41095 8.87611 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030512 B = 0.005447 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.438216 B = 5139.195822 C = 5714.581483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.341 6.341 3 C 0.114 3.886 4 C 0.470 3.530 5 O -0.549 6.549 6 N -0.689 5.689 7 C 0.272 3.728 8 H 0.003 0.997 9 C -0.138 4.138 10 C -0.548 4.548 11 H 0.073 0.927 12 C 0.016 3.984 13 N -0.917 5.917 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.577 4.577 19 S 2.439 3.561 20 O -0.924 6.924 21 O -0.937 6.937 22 C -0.609 4.609 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.406 0.594 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.015 0.985 30 H 0.266 0.734 31 H 0.199 0.801 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -7.615 15.128 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.259 6.259 3 C 0.068 3.932 4 C 0.253 3.747 5 O -0.428 6.428 6 N -0.338 5.338 7 C 0.169 3.831 8 H 0.021 0.979 9 C -0.197 4.197 10 C -0.586 4.586 11 H 0.091 0.909 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.797 3.203 15 H -0.194 1.194 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.705 4.705 19 S 2.620 3.380 20 O -0.921 6.921 21 O -0.935 6.935 22 C -0.737 4.737 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.135 0.865 26 H 0.242 0.758 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.671 -5.793 15.241 16.712 hybrid contribution -1.159 -1.259 -1.423 2.225 sum 2.512 -7.052 13.818 15.715 Atomic orbital electron populations 1.23102 0.79229 1.04678 1.01095 1.87956 1.21393 1.22005 1.94527 1.21489 0.95178 0.86173 0.90374 1.21144 0.79144 0.87847 0.86579 1.90826 1.49011 1.15585 1.87335 1.46194 1.65449 1.15455 1.06667 1.18413 0.92458 0.91632 0.80640 0.97941 1.21934 0.98038 0.98908 1.00826 1.21476 1.44850 0.93972 0.98259 0.90886 1.25795 0.95219 0.97157 1.00273 1.70048 1.47202 1.15459 1.22781 0.85387 0.78941 0.78480 0.77455 1.19435 1.21228 1.18972 1.31210 0.97884 1.25999 1.15382 1.07220 0.79241 0.76806 0.74772 1.93809 1.84657 1.52139 1.61515 1.93623 1.71980 1.87460 1.40398 1.31498 1.24971 1.12707 1.04568 0.95661 0.91182 0.86512 0.75835 0.94071 0.91383 0.96557 0.92491 0.78367 0.84142 0.84737 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 10.60 113.37 1.20 1.53 16 2 O -0.34 -8.25 10.28 -148.98 -1.53 -9.78 16 3 C 0.11 2.98 1.12 -11.51 -0.01 2.97 16 4 C 0.47 18.01 5.62 87.66 0.49 18.50 16 5 O -0.55 -25.41 13.24 18.98 0.25 -25.16 16 6 N -0.69 -28.42 4.99 -446.09 -2.23 -30.64 16 7 C 0.27 14.00 2.52 44.24 0.11 14.11 16 8 H 0.00 0.16 7.65 -2.39 -0.02 0.14 16 9 C -0.14 -7.10 9.26 71.98 0.67 -6.43 16 10 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 11 H 0.07 3.56 7.74 -2.92 -0.02 3.54 16 12 C 0.02 0.84 5.30 84.66 0.45 1.29 16 13 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 14 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 C -0.58 -10.88 7.35 72.00 0.53 -10.35 16 19 S 2.44 55.98 7.41 -56.49 -0.42 55.56 16 20 O -0.92 -32.28 15.41 -118.94 -1.83 -34.11 16 21 O -0.94 -23.14 18.18 -127.88 -2.32 -25.47 16 22 C -0.61 -12.18 6.14 72.00 0.44 -11.73 16 23 H 0.02 0.71 7.37 -2.38 -0.02 0.69 16 24 H 0.07 1.23 7.62 -2.39 -0.02 1.21 16 25 H 0.12 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.41 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 29 H 0.02 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.20 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.14 2.58 8.12 -2.39 -0.02 2.56 16 33 H 0.13 2.92 7.76 -2.39 -0.02 2.90 16 34 H 0.20 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -75.89 297.94 -1.36 -77.25 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.35 Total: 19.45 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.10 Total: -18.50 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.99 Total: -82.69 kcal Atomic # 8 Polarization: -89.08 SS G_CDS: -5.44 Total: -94.51 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 55.98 SS G_CDS: -0.42 Total: 55.56 kcal Total: -75.89 -1.36 -77.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341723313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.254 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds