Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28471 * 124.88609 * 2 1 4 4 C 1.31802 * 110.07361 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51708 * 179.97438 * 4 3 2 6 6 O 1.21573 * 120.00017 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99706 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72381 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 H 1.08001 * 120.00037 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99824 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00502 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99575 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47135 * 90.00187 * 13 11 9 15 15 H 1.48500 * 109.46751 * 210.00163 * 13 11 9 16 16 H 1.48503 * 109.47215 * 329.99996 * 13 11 9 17 17 C 1.41501 * 106.96561 * 0.22798 * 4 3 2 18 18 C 1.35033 * 124.88786 * 179.97438 * 2 1 3 19 19 C 1.50708 * 126.38324 * 359.97034 * 18 2 1 20 20 F 1.39898 * 109.47013 * 89.99214 * 19 18 2 21 21 F 1.39900 * 109.46946 * 209.99913 * 19 18 2 22 22 F 1.39905 * 109.46576 * 329.99370 * 19 18 2 23 23 H 1.08994 * 109.46929 * 90.02302 * 1 2 3 24 24 H 1.08999 * 109.46904 * 210.02620 * 1 2 3 25 25 H 1.09004 * 109.46669 * 330.02327 * 1 2 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 28 28 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 29 29 H 0.96997 * 120.00009 * 180.02562 * 12 11 9 30 30 H 1.07995 * 127.24572 * 179.75423 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6274 1.6399 0.0002 6 8 5.7598 1.1977 0.0003 7 7 4.4241 2.9722 -0.0002 8 6 5.5679 3.8876 0.0055 9 6 5.0723 5.3108 0.0107 10 1 4.0114 5.5132 0.0094 11 6 5.9733 6.3545 0.0161 12 7 7.2651 6.1081 0.0162 13 14 5.3589 8.1186 0.0218 14 1 5.1939 8.5808 1.4233 15 1 6.3423 8.9874 -0.6735 16 1 4.0521 8.1899 -0.6801 17 6 3.5272 -0.6971 -0.0045 18 6 2.2374 -1.1076 0.0005 19 6 1.7535 -2.5349 0.0018 20 9 1.6030 -2.9774 -1.3168 21 9 2.6859 -3.3428 0.6615 22 9 0.5223 -2.6092 0.6620 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 3.5206 3.3251 0.0000 27 1 6.1712 3.7098 0.8959 28 1 6.1742 3.7172 -0.8841 29 1 7.8989 6.8424 0.0203 30 1 4.4109 -1.3180 -0.0091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346960660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -105.838801 kcal Electronic energy + Delta-G solvation = -20959.028322 eV Core-core repulsion = 16955.590287 eV Total energy + Delta-G solvation = -4003.438035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.62037 -48.19851 -48.03782 -42.96772 -38.57642 -34.26076 -33.75104 -32.45693 -31.97187 -28.26319 -27.13772 -26.03279 -23.68040 -21.97043 -21.61867 -19.98817 -18.98379 -18.72845 -18.67402 -16.82924 -16.61159 -16.30687 -15.53610 -15.15919 -15.03048 -14.87417 -14.54728 -14.37022 -14.33129 -14.25540 -14.20648 -14.01515 -13.14336 -13.08415 -12.71948 -12.52096 -11.97056 -11.83022 -11.19304 -10.97306 -10.88936 -10.33527 -9.76143 -9.46178 -9.38314 -9.30671 -8.74245 -7.92215 -6.16267 -4.22985 1.21749 1.80670 1.82129 2.29108 3.15840 3.25500 3.31517 3.34211 3.58518 3.83323 3.90010 3.94563 4.20137 4.37632 4.71451 4.85926 5.01515 5.03933 5.20145 5.33944 5.55106 6.07503 6.24944 7.26269 7.33284 7.49501 7.52504 7.69783 7.95833 8.58064 8.74356 9.00419 9.43080 10.94008 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.038459 B = 0.003576 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.882404 B = 7827.139854 C = 8369.896299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.257 5.257 3 N -0.224 5.224 4 C 0.000 4.000 5 C 0.583 3.417 6 O -0.542 6.542 7 N -0.692 5.692 8 C 0.248 3.752 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.905 3.095 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.106 4.106 18 C -0.105 4.105 19 C 0.553 3.447 20 F -0.167 7.167 21 F -0.159 7.159 22 F -0.175 7.175 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.398 0.602 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.266 0.734 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 -16.415 0.046 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.047 5.047 3 N -0.061 5.061 4 C -0.159 4.159 5 C 0.365 3.635 6 O -0.419 6.419 7 N -0.339 5.339 8 C 0.127 3.873 9 C -0.582 4.582 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.523 5.523 13 Si 0.732 3.268 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.135 4.135 18 C -0.229 4.229 19 C 0.496 3.504 20 F -0.149 7.149 21 F -0.140 7.140 22 F -0.157 7.157 23 H 0.110 0.890 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.231 0.769 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.918 -15.697 0.037 22.356 hybrid contribution -0.379 0.241 -0.007 0.449 sum -16.297 -15.456 0.030 22.461 Atomic orbital electron populations 1.22665 0.72356 1.07062 1.05437 1.45292 1.08011 1.01337 1.50011 1.73732 1.03475 1.12109 1.16773 1.22493 0.91128 0.93857 1.08413 1.16828 0.85775 0.82343 0.78563 1.90781 1.22060 1.77153 1.51877 1.46384 1.12513 1.04717 1.70323 1.19229 0.83414 0.86474 0.98134 1.21215 0.93490 0.90178 1.53287 0.91777 1.24937 0.94698 0.99639 0.94651 1.69969 1.00932 1.32513 1.48866 0.86401 0.78605 0.83598 0.78231 1.20450 1.20996 1.19727 1.21664 0.95437 0.94532 1.01895 1.20986 0.93289 0.88445 1.20212 1.17010 0.74732 0.84438 0.74175 1.93270 1.95395 1.90603 1.35598 1.93259 1.65309 1.74607 1.80834 1.93113 1.44689 1.96518 1.81340 0.89000 0.87330 0.87448 0.76872 0.95062 0.95046 0.92411 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 11.04 59.85 0.66 1.11 16 2 N -0.26 -3.07 3.70 -63.85 -0.24 -3.30 16 3 N -0.22 -3.39 11.67 33.42 0.39 -3.00 16 4 C 0.00 0.00 7.13 -82.77 -0.59 -0.59 16 5 C 0.58 12.39 7.83 -12.39 -0.10 12.30 16 6 O -0.54 -13.18 16.93 5.30 0.09 -13.09 16 7 N -0.69 -15.30 5.55 -62.47 -0.35 -15.65 16 8 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 9 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 10 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 13 Si 0.90 20.86 29.54 -169.99 -5.02 15.83 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 C -0.11 -1.54 10.41 -39.37 -0.41 -1.95 16 18 C -0.10 -1.27 6.37 -82.21 -0.52 -1.79 16 19 C 0.55 5.45 3.43 36.01 0.12 5.58 16 20 F -0.17 -1.67 17.30 2.25 0.04 -1.63 16 21 F -0.16 -1.64 17.04 2.25 0.04 -1.60 16 22 F -0.18 -1.48 14.47 2.25 0.03 -1.45 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.11 0.59 5.44 -51.93 -0.28 0.31 16 25 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.40 7.93 8.05 -40.82 -0.33 7.61 16 27 H 0.03 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -32.03 287.18 -3.49 -35.52 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.26 Total: 1.49 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.28 Total: 7.77 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.54 Total: -47.19 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.11 Total: -4.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.03 -3.49 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346960660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.317 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds