Wall clock time and date at job start Mon Mar 30 2020 01:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35176 * 126.05199 * 2 1 4 4 C 1.40516 * 107.87559 * 180.19739 * 3 2 1 5 5 N 1.39676 * 125.98859 * 179.82822 * 4 3 2 6 6 C 1.34786 * 119.99711 * 359.71531 * 5 4 3 7 7 O 1.21763 * 119.99948 * 359.97438 * 6 5 4 8 8 C 1.46113 * 119.99989 * 179.72304 * 6 5 4 9 9 H 1.08002 * 119.99659 * 0.27818 * 8 6 5 10 10 C 1.40119 * 120.00058 * 180.27085 * 8 6 5 11 11 N 1.30634 * 120.00367 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 120.00146 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47077 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47093 * 120.00020 * 12 10 8 15 15 H 1.48503 * 109.47239 * 240.00300 * 12 10 8 16 16 N 1.31410 * 108.02660 * 359.56374 * 4 3 2 17 17 N 1.35073 * 126.04898 * 179.72272 * 2 1 3 18 18 C 1.46501 * 125.96551 * 359.96244 * 17 2 1 19 19 C 1.52998 * 109.47169 * 269.97118 * 18 17 2 20 20 F 1.39901 * 109.46499 * 60.00503 * 19 18 17 21 21 F 1.39902 * 109.47051 * 180.02562 * 19 18 17 22 22 F 1.39895 * 109.47313 * 300.00404 * 19 18 17 23 23 H 1.08999 * 109.46698 * 270.28352 * 1 2 3 24 24 H 1.09002 * 109.46925 * 30.27986 * 1 2 3 25 25 H 1.08994 * 109.47511 * 150.27506 * 1 2 3 26 26 H 1.08000 * 126.06324 * 0.04090 * 3 2 1 27 27 H 0.96990 * 120.00596 * 179.71055 * 5 4 3 28 28 H 0.96999 * 120.00324 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47459 * 29.98016 * 18 17 2 30 30 H 1.08999 * 109.46714 * 149.97721 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0929 0.0000 4 6 3.6376 0.6545 -0.0046 5 7 4.7699 1.4723 -0.0095 6 6 4.6328 2.8131 -0.0159 7 8 3.5218 3.3115 -0.0179 8 6 5.8173 3.6687 -0.0149 9 1 6.8026 3.2265 -0.0136 10 6 5.6747 5.0626 -0.0158 11 7 4.4829 5.5973 -0.0170 12 14 7.1891 6.1564 -0.0152 13 1 8.4101 5.3112 -0.0144 14 1 7.1814 7.0130 -1.2282 15 1 7.1795 7.0144 1.1968 16 7 3.6342 -0.6595 0.0023 17 7 2.3019 -1.0921 0.0053 18 6 1.8495 -2.4855 0.0128 19 6 1.6935 -2.9632 1.4579 20 9 0.7515 -2.1636 2.1141 21 9 1.2620 -4.2941 1.4650 22 9 2.9245 -2.8690 2.1157 23 1 -0.3633 0.0051 1.0277 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3634 -0.8924 -0.5095 26 1 1.9708 2.1207 0.0006 27 1 5.6549 1.0754 -0.0082 28 1 4.3842 6.5623 -0.0173 29 1 0.8904 -2.5589 -0.4998 30 1 2.5834 -3.1084 -0.4985 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001451805299.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:36 Heat of formation + Delta-G solvation = -135.622234 kcal Electronic energy + Delta-G solvation = -21437.645097 eV Core-core repulsion = 17432.915556 eV Total energy + Delta-G solvation = -4004.729541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.17648 -48.69546 -48.67982 -42.25950 -39.51336 -35.89679 -34.65139 -33.83418 -32.87116 -29.49278 -28.19665 -27.84600 -24.67407 -23.24823 -21.37284 -20.99396 -19.68960 -19.56848 -19.21467 -18.57636 -17.55831 -17.33439 -16.73448 -16.05020 -15.96353 -15.59524 -15.51370 -15.09523 -14.88474 -14.86003 -14.78774 -14.64019 -14.61505 -13.93294 -13.74098 -13.48995 -13.20881 -13.17315 -12.92898 -12.78264 -12.72619 -11.97208 -11.59086 -11.44977 -10.94272 -9.88072 -9.58825 -9.07034 -8.37730 -6.95781 0.64613 1.15048 1.40436 1.43416 1.61229 1.72240 1.83061 2.22453 2.51609 2.68422 2.70836 2.90023 3.19062 3.57939 3.67137 3.76555 4.03542 4.23209 4.51043 4.73393 4.85897 5.03613 5.06976 5.25197 5.42118 5.66554 6.05115 6.08366 6.23279 6.60552 6.78465 7.36867 8.30772 8.55992 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.039897 B = 0.004051 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.640107 B = 6910.506776 C = 7283.821500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.110 3.890 3 C -0.300 4.300 4 C 0.313 3.687 5 N -0.654 5.654 6 C 0.535 3.465 7 O -0.592 6.592 8 C -0.560 4.560 9 H 0.094 0.906 10 C 0.033 3.967 11 N -0.809 5.809 12 Si 1.003 2.997 13 H -0.248 1.248 14 H -0.266 1.266 15 H -0.267 1.267 16 N -0.358 5.358 17 N -0.386 5.386 18 C 0.101 3.899 19 C 0.436 3.564 20 F -0.185 7.185 21 F -0.170 7.170 22 F -0.193 7.193 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.143 0.857 27 H 0.408 0.592 28 H 0.280 0.720 29 H 0.180 0.820 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 -15.582 -0.638 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 C -0.331 4.331 4 C 0.056 3.944 5 N -0.303 5.303 6 C 0.341 3.659 7 O -0.476 6.476 8 C -0.596 4.596 9 H 0.112 0.888 10 C -0.184 4.184 11 N -0.438 5.438 12 Si 0.822 3.178 13 H -0.170 1.170 14 H -0.191 1.191 15 H -0.192 1.192 16 N -0.190 5.190 17 N -0.171 5.171 18 C -0.023 4.023 19 C 0.380 3.620 20 F -0.167 7.167 21 F -0.151 7.151 22 F -0.175 7.175 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.160 0.840 27 H 0.243 0.757 28 H 0.090 0.910 29 H 0.197 0.803 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.050 -16.162 -0.607 17.643 hybrid contribution 0.640 1.067 0.454 1.324 sum -6.410 -15.095 -0.152 16.400 Atomic orbital electron populations 1.20664 0.83587 1.05710 1.04627 1.21616 0.96428 0.85408 0.98046 1.21720 0.91214 1.00549 1.19576 1.19743 0.89744 0.89521 0.95406 1.43188 1.05786 1.05913 1.75436 1.18787 0.91086 0.79075 0.76939 1.90513 1.28243 1.73375 1.55488 1.21340 0.92551 0.91522 1.54144 0.88824 1.26972 1.00658 0.99760 0.91035 1.70126 1.26028 1.12961 1.34662 0.84878 0.76933 0.77286 0.78673 1.17046 1.19096 1.19231 1.77402 0.97098 1.08806 1.35655 1.47706 1.02869 1.04786 1.61774 1.23066 1.08502 0.79916 0.90783 1.21307 0.73511 0.75598 0.91573 1.93199 1.65705 1.73848 1.83945 1.93219 1.89748 1.35181 1.96960 1.93216 1.44485 1.95883 1.83877 0.89104 0.89062 0.87451 0.83990 0.75740 0.91019 0.80305 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.85 71.24 0.70 -1.13 16 2 C 0.11 3.62 6.71 41.35 0.28 3.90 16 3 C -0.30 -13.64 9.51 22.12 0.21 -13.43 16 4 C 0.31 14.66 8.10 133.46 1.08 15.74 16 5 N -0.65 -32.35 5.43 -311.69 -1.69 -34.05 16 6 C 0.53 31.09 7.70 86.28 0.66 31.76 16 7 O -0.59 -38.30 12.13 -4.55 -0.06 -38.36 16 8 C -0.56 -31.04 9.53 24.77 0.24 -30.80 16 9 H 0.09 4.65 7.85 -2.91 -0.02 4.62 16 10 C 0.03 1.75 5.50 85.33 0.47 2.22 16 11 N -0.81 -47.53 11.82 21.85 0.26 -47.27 16 12 Si 1.00 39.47 29.56 68.60 2.03 41.50 16 13 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 14 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 15 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 16 N -0.36 -14.37 12.60 -54.59 -0.69 -15.06 16 17 N -0.39 -11.88 3.47 -334.72 -1.16 -13.04 16 18 C 0.10 1.80 6.21 86.38 0.54 2.34 16 19 C 0.44 9.26 3.29 71.98 0.24 9.50 16 20 F -0.19 -4.38 16.77 44.97 0.75 -3.62 16 21 F -0.17 -3.01 17.32 44.97 0.78 -2.23 16 22 F -0.19 -5.55 17.23 44.97 0.78 -4.78 16 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.11 1.31 7.07 -2.39 -0.02 1.29 16 26 H 0.14 7.50 5.90 -2.91 -0.02 7.49 16 27 H 0.41 17.69 8.80 -92.72 -0.82 16.87 16 28 H 0.28 14.74 8.29 -92.71 -0.77 13.97 16 29 H 0.18 1.47 7.04 -2.39 -0.02 1.45 16 30 H 0.16 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -78.22 283.43 5.81 -72.41 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.40 Total: 24.40 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 4.41 Total: 20.10 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.28 Total: -109.41 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.06 Total: -38.36 kcal Atomic # 9 Polarization: -12.94 SS G_CDS: 2.31 Total: -10.63 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -78.22 5.81 -72.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451805299.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.215 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds