Wall clock time and date at job start Mon Mar 30 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36919 * 119.99447 * 2 1 4 4 H 1.07999 * 119.99875 * 157.37172 * 3 2 1 5 5 C 1.39021 * 119.99881 * 337.36579 * 3 2 1 6 6 N 1.31373 * 120.00299 * 344.50706 * 5 3 2 7 7 Si 1.86798 * 119.99722 * 164.50854 * 5 3 2 8 8 H 1.48500 * 109.47443 * 94.97866 * 7 5 3 9 9 H 1.48498 * 109.47469 * 214.98527 * 7 5 3 10 10 H 1.48509 * 109.47246 * 334.98411 * 7 5 3 11 11 C 1.34774 * 120.00327 * 180.27744 * 2 1 3 12 12 O 1.21606 * 119.99614 * 185.50094 * 11 2 1 13 13 C 1.47611 * 120.00132 * 5.49582 * 11 2 1 14 14 C 1.41544 * 126.52468 * 185.57245 * 13 11 2 15 15 C 1.35342 * 105.50150 * 179.84400 * 14 13 11 16 16 C 1.50705 * 126.38211 * 180.13690 * 15 14 13 17 17 F 1.39897 * 109.47096 * 270.32719 * 16 15 14 18 18 F 1.39904 * 109.46735 * 30.32617 * 16 15 14 19 19 F 1.39902 * 109.47051 * 150.32596 * 16 15 14 20 20 N 1.35051 * 107.24321 * 0.41358 * 15 14 13 21 21 C 1.46499 * 124.88532 * 179.72853 * 20 15 14 22 22 N 1.28467 * 110.23863 * 359.72501 * 20 15 14 23 23 H 1.09004 * 109.47051 * 93.65508 * 1 2 3 24 24 H 1.09001 * 109.46954 * 213.64768 * 1 2 3 25 25 H 1.08993 * 109.47416 * 333.65586 * 1 2 3 26 26 H 0.97001 * 120.00091 * 179.97438 * 6 5 3 27 27 H 1.07994 * 127.24625 * 359.96346 * 14 13 11 28 28 H 1.09007 * 109.47163 * 270.02702 * 21 20 15 29 29 H 1.09002 * 109.46719 * 30.01699 * 21 20 15 30 30 H 1.08994 * 109.47866 * 150.02042 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 3.1671 1.2219 0.3599 5 6 1.5346 2.3433 -0.4633 6 7 0.4324 2.2624 -1.1737 7 14 2.2755 4.0137 -0.0758 8 1 3.1401 4.4454 -1.2033 9 1 1.1870 5.0046 0.1208 10 1 3.0886 3.9192 1.1633 11 6 2.1389 -1.1671 -0.0057 12 8 3.3508 -1.1699 0.0953 13 6 1.4061 -2.4420 -0.1343 14 6 1.9569 -3.7429 -0.0463 15 6 0.9154 -4.5893 -0.2217 16 6 0.9759 -6.0951 -0.2129 17 9 1.2203 -6.5596 -1.5096 18 9 2.0064 -6.5153 0.6350 19 9 -0.2427 -6.6081 0.2444 20 7 -0.1872 -3.8331 -0.4124 21 6 -1.5341 -4.3597 -0.6467 22 7 0.1147 -2.5856 -0.3586 23 1 -0.3633 -0.0655 -1.0256 24 1 -0.3633 -0.8555 0.5694 25 1 -0.3634 0.9209 0.4560 26 1 0.0032 3.0701 -1.4967 27 1 2.9902 -4.0049 0.1266 28 1 -1.6921 -4.4898 -1.7174 29 1 -1.6407 -5.3212 -0.1444 30 1 -2.2714 -3.6603 -0.2529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519272674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:59 Heat of formation + Delta-G solvation = -79.144060 kcal Electronic energy + Delta-G solvation = -21774.334826 eV Core-core repulsion = 17772.054362 eV Total energy + Delta-G solvation = -4002.280464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.38976 -47.97029 -47.80872 -42.50430 -38.14572 -34.72207 -33.33131 -31.99484 -31.33813 -27.60218 -26.48422 -25.64732 -24.65468 -22.33897 -21.19712 -19.66947 -18.74518 -18.42910 -17.84105 -16.83346 -16.27558 -16.21615 -15.21257 -14.95651 -14.67292 -14.55766 -14.32141 -14.12156 -14.05540 -13.98893 -13.88200 -13.66252 -12.79700 -12.74203 -12.37256 -12.24550 -11.77503 -11.57186 -11.25283 -10.97537 -10.49044 -10.34594 -10.13749 -9.29009 -9.05083 -8.82938 -8.65911 -7.70277 -6.40397 -3.90227 1.61743 2.16070 2.31827 2.62323 3.17725 3.23469 3.30050 3.44792 3.86166 4.08182 4.17967 4.33186 4.49483 4.81185 4.98938 5.13528 5.24891 5.30170 5.43012 5.78857 5.93693 6.48013 6.55214 6.77011 6.97106 7.30511 7.50980 8.00885 8.11871 8.45528 9.11433 9.34949 9.93661 10.63050 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.039498 B = 0.004573 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.727489 B = 6121.656860 C = 6601.406032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.417 5.417 3 C -0.306 4.306 4 H 0.104 0.896 5 C 0.033 3.967 6 N -0.867 5.867 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.509 3.491 12 O -0.584 6.584 13 C 0.023 3.977 14 C -0.116 4.116 15 C -0.109 4.109 16 C 0.552 3.448 17 F -0.170 7.170 18 F -0.162 7.162 19 F -0.178 7.178 20 N -0.270 5.270 21 C 0.068 3.932 22 N -0.230 5.230 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.270 0.730 27 H 0.170 0.830 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 -14.325 1.279 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.133 5.133 3 C -0.435 4.435 4 H 0.122 0.878 5 C -0.172 4.172 6 N -0.505 5.505 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.296 3.704 12 O -0.468 6.468 13 C -0.135 4.135 14 C -0.146 4.146 15 C -0.234 4.234 16 C 0.496 3.504 17 F -0.151 7.151 18 F -0.143 7.143 19 F -0.159 7.159 20 N -0.059 5.059 21 C -0.072 4.072 22 N -0.066 5.066 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.188 0.812 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.990 -13.648 1.047 15.370 hybrid contribution 0.667 0.083 0.045 0.674 sum -6.323 -13.565 1.092 15.006 Atomic orbital electron populations 1.21653 0.80155 0.99732 1.01410 1.43504 1.06220 1.04377 1.59224 1.19754 0.99898 0.83504 1.40325 0.87798 1.25421 0.96524 1.00354 0.94913 1.70037 1.19289 1.29751 1.31449 0.85877 0.78597 0.80741 0.79300 1.20215 1.20696 1.19100 1.16622 0.86178 0.81227 0.86419 1.90624 1.12813 1.85876 1.57502 1.22668 0.89019 0.96146 1.05670 1.21589 0.99437 0.90512 1.03031 1.20919 0.91306 0.91133 1.20038 1.17089 0.73717 0.85514 0.74096 1.93254 1.94054 1.90069 1.37756 1.93239 1.59029 1.91071 1.70968 1.93096 1.44801 1.88838 1.89162 1.45416 1.07669 1.02949 1.49834 1.22528 0.78986 1.01597 1.04053 1.74165 1.17149 0.97310 1.17962 0.92591 0.93787 0.91334 0.91987 0.81234 0.89520 0.87792 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.71 7.65 59.85 0.46 3.17 16 2 N -0.42 -11.17 3.01 -123.35 -0.37 -11.54 16 3 C -0.31 -8.60 9.28 -14.99 -0.14 -8.74 16 4 H 0.10 3.01 7.39 -52.49 -0.39 2.62 16 5 C 0.03 0.87 4.99 -17.46 -0.09 0.78 16 6 N -0.87 -23.11 10.89 55.50 0.60 -22.50 16 7 Si 0.93 20.41 29.58 -169.99 -5.03 15.38 16 8 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 C 0.51 13.29 7.62 -12.44 -0.09 13.19 16 12 O -0.58 -16.71 16.61 5.27 0.09 -16.63 16 13 C 0.02 0.50 6.75 -82.77 -0.56 -0.06 16 14 C -0.12 -2.11 10.42 -39.35 -0.41 -2.52 16 15 C -0.11 -1.67 6.37 -82.21 -0.52 -2.20 16 16 C 0.55 6.85 3.43 36.01 0.12 6.98 16 17 F -0.17 -2.11 17.30 2.25 0.04 -2.07 16 18 F -0.16 -2.04 17.04 2.25 0.04 -2.00 16 19 F -0.18 -1.91 14.47 2.25 0.03 -1.88 16 20 N -0.27 -4.13 3.70 -63.85 -0.24 -4.37 16 21 C 0.07 0.67 11.03 59.85 0.66 1.33 16 22 N -0.23 -4.41 8.73 33.41 0.29 -4.11 16 23 H 0.06 1.37 7.83 -51.93 -0.41 0.97 16 24 H 0.04 0.94 5.84 -51.93 -0.30 0.64 16 25 H 0.07 1.67 6.79 -51.93 -0.35 1.32 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.17 2.85 8.06 -52.49 -0.42 2.42 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.83 5.44 -51.93 -0.28 0.55 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -31.53 276.12 -3.09 -34.62 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -2.14 Total: -1.00 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -0.57 Total: 11.94 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.29 Total: -42.52 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.11 Total: -5.95 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.53 -3.09 -34.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519272674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.526 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds