Wall clock time and date at job start Mon Mar 30 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36919 * 119.99447 * 2 1 4 4 H 1.07999 * 119.99875 * 157.37172 * 3 2 1 5 5 C 1.39021 * 119.99881 * 337.36579 * 3 2 1 6 6 N 1.31373 * 120.00299 * 344.50706 * 5 3 2 7 7 Si 1.86798 * 119.99722 * 164.50854 * 5 3 2 8 8 H 1.48500 * 109.47443 * 94.97866 * 7 5 3 9 9 H 1.48498 * 109.47469 * 214.98527 * 7 5 3 10 10 H 1.48509 * 109.47246 * 334.98411 * 7 5 3 11 11 C 1.34774 * 120.00327 * 180.27744 * 2 1 3 12 12 O 1.21606 * 119.99614 * 185.50094 * 11 2 1 13 13 C 1.47611 * 120.00132 * 5.49582 * 11 2 1 14 14 C 1.41544 * 126.52468 * 185.57245 * 13 11 2 15 15 C 1.35342 * 105.50150 * 179.84400 * 14 13 11 16 16 C 1.50705 * 126.38211 * 180.13690 * 15 14 13 17 17 F 1.39897 * 109.47096 * 270.32719 * 16 15 14 18 18 F 1.39904 * 109.46735 * 30.32617 * 16 15 14 19 19 F 1.39902 * 109.47051 * 150.32596 * 16 15 14 20 20 N 1.35051 * 107.24321 * 0.41358 * 15 14 13 21 21 C 1.46499 * 124.88532 * 179.72853 * 20 15 14 22 22 N 1.28467 * 110.23863 * 359.72501 * 20 15 14 23 23 H 1.09004 * 109.47051 * 93.65508 * 1 2 3 24 24 H 1.09001 * 109.46954 * 213.64768 * 1 2 3 25 25 H 1.08993 * 109.47416 * 333.65586 * 1 2 3 26 26 H 0.97001 * 120.00091 * 179.97438 * 6 5 3 27 27 H 1.07994 * 127.24625 * 359.96346 * 14 13 11 28 28 H 1.09007 * 109.47163 * 270.02702 * 21 20 15 29 29 H 1.09002 * 109.46719 * 30.01699 * 21 20 15 30 30 H 1.08994 * 109.47866 * 150.02042 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 3.1671 1.2219 0.3599 5 6 1.5346 2.3433 -0.4633 6 7 0.4324 2.2624 -1.1737 7 14 2.2755 4.0137 -0.0758 8 1 3.1401 4.4454 -1.2033 9 1 1.1870 5.0046 0.1208 10 1 3.0886 3.9192 1.1633 11 6 2.1389 -1.1671 -0.0057 12 8 3.3508 -1.1699 0.0953 13 6 1.4061 -2.4420 -0.1343 14 6 1.9569 -3.7429 -0.0463 15 6 0.9154 -4.5893 -0.2217 16 6 0.9759 -6.0951 -0.2129 17 9 1.2203 -6.5596 -1.5096 18 9 2.0064 -6.5153 0.6350 19 9 -0.2427 -6.6081 0.2444 20 7 -0.1872 -3.8331 -0.4124 21 6 -1.5341 -4.3597 -0.6467 22 7 0.1147 -2.5856 -0.3586 23 1 -0.3633 -0.0655 -1.0256 24 1 -0.3633 -0.8555 0.5694 25 1 -0.3634 0.9209 0.4560 26 1 0.0032 3.0701 -1.4967 27 1 2.9902 -4.0049 0.1266 28 1 -1.6921 -4.4898 -1.7174 29 1 -1.6407 -5.3212 -0.1444 30 1 -2.2714 -3.6603 -0.2529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519272674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:58 Heat of formation + Delta-G solvation = -100.018637 kcal Electronic energy + Delta-G solvation = -21775.240016 eV Core-core repulsion = 17772.054362 eV Total energy + Delta-G solvation = -4003.185653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.38304 -48.93103 -48.81704 -43.91129 -40.13427 -36.76627 -34.67203 -33.73010 -32.92914 -28.99417 -28.17723 -27.08766 -26.39421 -23.95173 -22.46500 -21.18423 -19.74616 -19.48767 -19.36045 -18.83817 -17.78974 -17.48955 -16.83121 -16.47052 -15.98514 -15.89005 -15.69091 -15.62464 -15.29247 -15.10766 -14.96822 -14.88867 -14.56663 -13.92532 -13.70365 -13.57364 -13.38594 -13.21039 -13.17256 -12.70887 -12.46846 -12.10323 -11.79390 -11.04360 -10.75941 -10.67635 -10.24505 -9.74933 -8.41407 -6.02603 0.29742 0.67258 1.00384 1.42454 1.44033 1.52132 1.58489 2.24142 2.36556 2.40548 2.81120 2.94807 3.09488 3.16703 3.31475 3.96195 4.14639 4.26591 4.32849 4.41780 4.58753 4.73253 4.98688 5.06177 5.31782 5.41247 5.45614 6.03261 6.37216 6.63297 7.06550 7.33426 7.91055 8.62002 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.039498 B = 0.004573 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.727489 B = 6121.656860 C = 6601.406032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.435 5.435 3 C -0.351 4.351 4 H 0.081 0.919 5 C 0.001 3.999 6 N -0.886 5.886 7 Si 0.997 3.003 8 H -0.273 1.273 9 H -0.264 1.264 10 H -0.268 1.268 11 C 0.502 3.498 12 O -0.623 6.623 13 C -0.015 4.015 14 C -0.130 4.130 15 C -0.093 4.093 16 C 0.568 3.432 17 F -0.165 7.165 18 F -0.160 7.160 19 F -0.161 7.161 20 N -0.251 5.251 21 C 0.053 3.947 22 N -0.235 5.235 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.278 0.722 27 H 0.175 0.825 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -15.556 1.172 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.151 5.151 3 C -0.479 4.479 4 H 0.099 0.901 5 C -0.202 4.202 6 N -0.524 5.524 7 Si 0.819 3.181 8 H -0.198 1.198 9 H -0.188 1.188 10 H -0.192 1.192 11 C 0.290 3.710 12 O -0.510 6.510 13 C -0.171 4.171 14 C -0.159 4.159 15 C -0.219 4.219 16 C 0.511 3.489 17 F -0.147 7.147 18 F -0.141 7.141 19 F -0.142 7.142 20 N -0.041 5.041 21 C -0.085 4.085 22 N -0.074 5.074 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.192 0.808 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.677 -14.887 0.932 17.256 hybrid contribution 1.059 0.288 0.032 1.098 sum -7.618 -14.599 0.965 16.495 Atomic orbital electron populations 1.21483 0.78677 0.99975 1.00751 1.43729 1.07228 1.04424 1.59751 1.19762 0.99870 0.85216 1.43015 0.90148 1.26245 0.96808 1.03294 0.93849 1.70093 1.19918 1.31142 1.31199 0.84880 0.78179 0.76116 0.78890 1.19839 1.18846 1.19193 1.17211 0.86168 0.82600 0.85010 1.90560 1.14647 1.86990 1.58844 1.22022 0.90327 0.95271 1.09489 1.21659 1.00645 0.89679 1.03890 1.21147 0.90304 0.92664 1.17813 1.16607 0.74298 0.83650 0.74306 1.93273 1.94092 1.89744 1.37546 1.93256 1.59112 1.90802 1.70953 1.93133 1.43755 1.88355 1.88977 1.45932 1.09508 1.01875 1.46771 1.23108 0.76329 1.02880 1.06161 1.74013 1.15993 0.99469 1.17884 0.93818 0.91619 0.92533 0.91212 0.80778 0.87176 0.85341 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.49 7.65 127.77 0.98 7.46 16 2 N -0.44 -24.20 3.01 -662.44 -1.99 -26.20 16 3 C -0.35 -20.52 9.28 84.09 0.78 -19.74 16 4 H 0.08 4.95 7.39 -2.91 -0.02 4.93 16 5 C 0.00 0.08 4.99 84.95 0.42 0.50 16 6 N -0.89 -47.54 10.89 21.68 0.24 -47.31 16 7 Si 1.00 42.14 29.58 68.60 2.03 44.17 16 8 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 9 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 C 0.50 27.31 7.62 86.72 0.66 27.97 16 12 O -0.62 -37.58 16.61 -4.05 -0.07 -37.65 16 13 C -0.02 -0.66 6.75 42.43 0.29 -0.37 16 14 C -0.13 -4.66 10.42 22.42 0.23 -4.42 16 15 C -0.09 -2.64 6.37 41.40 0.26 -2.37 16 16 C 0.57 12.29 3.43 71.24 0.24 12.53 16 17 F -0.17 -3.58 17.30 44.97 0.78 -2.80 16 18 F -0.16 -3.61 17.04 44.97 0.77 -2.84 16 19 F -0.16 -2.78 14.47 44.97 0.65 -2.13 16 20 N -0.25 -7.05 3.70 -355.93 -1.32 -8.36 16 21 C 0.05 0.83 11.03 127.77 1.41 2.24 16 22 N -0.24 -8.79 8.73 -48.20 -0.42 -9.21 16 23 H 0.04 2.17 7.83 -2.38 -0.02 2.16 16 24 H 0.07 2.82 5.84 -2.39 -0.01 2.80 16 25 H 0.06 2.80 6.79 -2.39 -0.02 2.79 16 26 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.17 5.90 8.06 -2.91 -0.02 5.88 16 28 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.13 1.44 5.44 -2.39 -0.01 1.43 16 30 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.66 276.12 7.15 -63.51 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.20 Total: 5.03 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 5.28 Total: 23.80 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -3.49 Total: -91.08 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.07 Total: -37.65 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 2.19 Total: -7.77 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -70.66 7.15 -63.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519272674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.510 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds