Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42104 * 108.57859 * 2 1 4 4 O 1.42107 * 108.57811 * 228.98272 * 2 1 3 5 5 C 1.81396 * 101.92409 * 114.49155 * 2 1 3 6 6 C 1.52997 * 109.47056 * 174.26287 * 5 2 1 7 7 C 1.50699 * 113.00201 * 282.48714 * 6 5 2 8 8 O 1.21276 * 119.99926 * 354.15376 * 7 6 5 9 9 N 1.34781 * 120.00328 * 174.15793 * 7 6 5 10 10 C 1.46498 * 120.00008 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46816 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99894 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99806 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46828 * 120.00279 * 15 13 11 18 18 H 1.48498 * 109.46888 * 239.99976 * 15 13 11 19 19 C 1.54036 * 113.81949 * 150.49800 * 6 5 2 20 20 O 1.44173 * 85.52228 * 223.19652 * 19 6 5 21 21 C 1.44174 * 93.33917 * 24.19187 * 20 19 6 22 22 H 1.09006 * 109.46855 * 305.50683 * 1 2 3 23 23 H 1.08999 * 109.47478 * 65.50480 * 1 2 3 24 24 H 1.09000 * 109.47008 * 185.51167 * 1 2 3 25 25 H 1.08996 * 109.47083 * 54.26492 * 5 2 1 26 26 H 1.08995 * 109.47025 * 294.26099 * 5 2 1 27 27 H 0.97006 * 119.99815 * 0.02562 * 9 7 6 28 28 H 1.08998 * 109.47156 * 299.99691 * 10 9 7 29 29 H 1.08994 * 109.47265 * 59.99972 * 10 9 7 30 30 H 0.96997 * 119.99718 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.86251 * 337.34606 * 19 6 5 32 32 H 1.09003 * 113.86763 * 109.04521 * 19 6 5 33 33 H 1.09001 * 113.86539 * 221.66114 * 21 20 19 34 34 H 1.09004 * 113.98645 * 89.97017 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.6984 -0.9509 1.7396 7 6 4.1859 -2.1575 0.9796 8 8 3.3897 -2.8994 0.4444 9 7 5.5067 -2.4122 0.8948 10 6 5.9805 -3.5855 0.1565 11 6 7.4855 -3.6405 0.2131 12 1 8.0341 -2.8780 0.7460 13 6 8.1620 -4.6649 -0.4147 14 7 7.4939 -5.5937 -1.0633 15 14 10.0274 -4.7334 -0.3441 16 1 10.5356 -3.5806 0.4418 17 1 10.4519 -6.0000 0.3048 18 1 10.5774 -4.6747 -1.7222 19 6 4.2211 -0.8708 3.1863 20 8 5.3027 -0.0947 2.6328 21 6 4.5308 0.3206 1.4881 22 1 -0.3633 0.5969 0.8366 23 1 -0.3634 0.4261 -0.9351 24 1 -0.3633 -1.0229 0.0987 25 1 1.6766 -1.6936 1.7057 26 1 1.8507 -0.0667 2.4064 27 1 6.1436 -1.8190 1.3233 28 1 5.5665 -4.4886 0.6050 29 1 5.6587 -3.5154 -0.8824 30 1 7.9698 -6.3141 -1.5052 31 1 3.5735 -0.3079 3.8586 32 1 4.5324 -1.8314 3.5966 33 1 5.0879 0.3048 0.5513 34 1 3.9772 1.2473 1.6395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520118728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -110.189120 kcal Electronic energy + Delta-G solvation = -20471.934874 eV Core-core repulsion = 17113.316136 eV Total energy + Delta-G solvation = -3358.618738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23752 -38.05559 -36.94136 -35.97513 -34.27932 -32.54032 -32.27042 -29.85478 -27.64088 -26.82036 -26.10752 -23.40244 -21.44900 -19.20888 -18.87745 -17.47833 -17.02974 -16.68824 -16.17311 -15.91650 -15.56499 -15.38854 -14.87273 -14.62690 -14.34019 -14.03897 -13.48586 -13.45871 -13.30796 -12.75752 -12.49383 -12.08480 -11.96776 -11.93683 -11.86962 -11.60436 -11.12123 -10.98278 -10.90308 -10.85447 -10.33880 -10.26899 -10.08030 -9.33643 -9.07969 -8.70822 -7.87870 -6.12868 -4.19245 -0.11959 2.62774 2.95947 3.27290 3.34169 3.36431 3.38397 3.49825 3.75958 3.95623 4.25164 4.28298 4.38201 4.58920 4.61075 4.90366 5.01178 5.12174 5.23532 5.24302 5.40429 5.42377 5.51814 5.68025 5.79301 5.91170 7.31536 7.41607 7.54666 7.69893 7.99841 8.60332 8.77947 9.04918 9.46761 10.97445 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.005033 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.479086 B = 5562.309596 C = 6035.253548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.411 3.589 3 O -0.943 6.943 4 O -0.904 6.904 5 C -0.594 4.594 6 C -0.146 4.146 7 C 0.511 3.489 8 O -0.528 6.528 9 N -0.699 5.699 10 C 0.248 3.752 11 C -0.542 4.542 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.065 3.935 20 O -0.364 6.364 21 C 0.028 3.972 22 H 0.125 0.875 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.398 0.602 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 12.730 8.012 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.592 3.408 3 O -0.940 6.940 4 O -0.901 6.901 5 C -0.723 4.723 6 C -0.151 4.151 7 C 0.293 3.707 8 O -0.406 6.406 9 N -0.348 5.348 10 C 0.128 3.872 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.013 4.013 20 O -0.282 6.282 21 C -0.049 4.049 22 H 0.143 0.857 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.167 0.833 26 H 0.155 0.845 27 H 0.233 0.767 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.307 12.338 6.917 19.421 hybrid contribution 0.366 -0.216 0.788 0.896 sum -12.941 12.122 7.705 19.333 Atomic orbital electron populations 1.30306 1.27398 1.11628 1.11419 1.08195 0.78487 0.75933 0.78179 1.93584 1.79094 1.34728 1.86626 1.93730 1.77845 1.65896 1.52589 1.30177 1.03032 1.15041 1.24004 1.23798 0.92604 0.98213 1.00458 1.19340 0.84274 0.85400 0.81718 1.90703 1.54610 1.48651 1.46606 1.46458 1.05253 1.29837 1.53256 1.19200 0.94196 0.81890 0.91939 1.21270 0.90767 1.10950 1.35015 0.91724 1.24945 0.99124 0.95145 0.94777 1.69989 1.35807 1.13025 1.33515 0.86351 0.84555 0.78048 0.77913 1.19560 1.20849 1.20788 1.24015 0.87807 0.97291 0.92229 1.89751 1.31568 1.68633 1.38262 1.24531 0.92556 0.95348 0.92490 0.85666 0.85329 0.85136 0.83280 0.84548 0.76721 0.95353 0.95015 0.92530 0.88867 0.87870 0.87507 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.48 10.62 101.05 1.07 -3.41 16 2 S 2.41 27.93 4.99 -107.50 -0.54 27.40 16 3 O -0.94 -12.40 16.27 -57.83 -0.94 -13.34 16 4 O -0.90 -15.91 16.29 -64.51 -1.05 -16.96 16 5 C -0.59 -6.00 5.04 37.16 0.19 -5.81 16 6 C -0.15 -2.07 0.99 -154.58 -0.15 -2.22 16 7 C 0.51 10.32 6.56 -10.98 -0.07 10.25 16 8 O -0.53 -12.34 14.68 -10.16 -0.15 -12.48 16 9 N -0.70 -15.47 5.38 -61.48 -0.33 -15.80 16 10 C 0.25 6.75 5.43 -5.19 -0.03 6.73 16 11 C -0.54 -15.10 9.28 -34.44 -0.32 -15.42 16 12 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 14 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 15 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.06 0.76 8.28 37.61 0.31 1.07 16 20 O -0.36 -5.20 11.11 -35.23 -0.39 -5.59 16 21 C 0.03 0.38 6.75 37.61 0.25 0.64 16 22 H 0.12 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 24 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.15 1.42 7.62 -51.93 -0.40 1.02 16 26 H 0.14 0.72 7.82 -51.93 -0.41 0.32 16 27 H 0.40 8.05 6.67 -40.82 -0.27 7.78 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 32 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 33 H 0.11 1.57 8.09 -51.93 -0.42 1.15 16 34 H 0.11 1.21 7.03 -51.93 -0.37 0.85 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -37.69 301.08 -6.33 -44.01 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.34 Total: 4.16 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 1.16 Total: -6.48 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.41 Total: -41.54 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -2.53 Total: -48.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 27.93 SS G_CDS: -0.54 Total: 27.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.69 -6.33 -44.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520118728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.176 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds