Wall clock time and date at job start Mon Mar 30 2020 02:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42104 * 108.57859 * 2 1 4 4 O 1.42107 * 108.57811 * 228.98272 * 2 1 3 5 5 C 1.81396 * 101.92409 * 114.49155 * 2 1 3 6 6 C 1.52997 * 109.47056 * 174.26287 * 5 2 1 7 7 C 1.50699 * 113.00201 * 282.48714 * 6 5 2 8 8 O 1.21276 * 119.99926 * 354.15376 * 7 6 5 9 9 N 1.34781 * 120.00328 * 174.15793 * 7 6 5 10 10 C 1.46498 * 120.00008 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46816 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99894 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99806 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.46828 * 120.00279 * 15 13 11 18 18 H 1.48498 * 109.46888 * 239.99976 * 15 13 11 19 19 C 1.54036 * 113.81949 * 150.49800 * 6 5 2 20 20 O 1.44173 * 85.52228 * 223.19652 * 19 6 5 21 21 C 1.44174 * 93.33917 * 24.19187 * 20 19 6 22 22 H 1.09006 * 109.46855 * 305.50683 * 1 2 3 23 23 H 1.08999 * 109.47478 * 65.50480 * 1 2 3 24 24 H 1.09000 * 109.47008 * 185.51167 * 1 2 3 25 25 H 1.08996 * 109.47083 * 54.26492 * 5 2 1 26 26 H 1.08995 * 109.47025 * 294.26099 * 5 2 1 27 27 H 0.97006 * 119.99815 * 0.02562 * 9 7 6 28 28 H 1.08998 * 109.47156 * 299.99691 * 10 9 7 29 29 H 1.08994 * 109.47265 * 59.99972 * 10 9 7 30 30 H 0.96997 * 119.99718 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.86251 * 337.34606 * 19 6 5 32 32 H 1.09003 * 113.86763 * 109.04521 * 19 6 5 33 33 H 1.09001 * 113.86539 * 221.66114 * 21 20 19 34 34 H 1.09004 * 113.98645 * 89.97017 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.6984 -0.9509 1.7396 7 6 4.1859 -2.1575 0.9796 8 8 3.3897 -2.8994 0.4444 9 7 5.5067 -2.4122 0.8948 10 6 5.9805 -3.5855 0.1565 11 6 7.4855 -3.6405 0.2131 12 1 8.0341 -2.8780 0.7460 13 6 8.1620 -4.6649 -0.4147 14 7 7.4939 -5.5937 -1.0633 15 14 10.0274 -4.7334 -0.3441 16 1 10.5356 -3.5806 0.4418 17 1 10.4519 -6.0000 0.3048 18 1 10.5774 -4.6747 -1.7222 19 6 4.2211 -0.8708 3.1863 20 8 5.3027 -0.0947 2.6328 21 6 4.5308 0.3206 1.4881 22 1 -0.3633 0.5969 0.8366 23 1 -0.3634 0.4261 -0.9351 24 1 -0.3633 -1.0229 0.0987 25 1 1.6766 -1.6936 1.7057 26 1 1.8507 -0.0667 2.4064 27 1 6.1436 -1.8190 1.3233 28 1 5.5665 -4.4886 0.6050 29 1 5.6587 -3.5154 -0.8824 30 1 7.9698 -6.3141 -1.5052 31 1 3.5735 -0.3079 3.8586 32 1 4.5324 -1.8314 3.5966 33 1 5.0879 0.3048 0.5513 34 1 3.9772 1.2473 1.6395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520118728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:17 Heat of formation + Delta-G solvation = -143.331013 kcal Electronic energy + Delta-G solvation = -20473.372014 eV Core-core repulsion = 17113.316136 eV Total energy + Delta-G solvation = -3360.055879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41123 -39.64111 -37.92375 -36.97796 -36.24527 -34.35134 -33.60430 -30.48484 -29.56956 -27.79029 -27.24698 -25.24070 -23.13206 -20.80414 -19.84543 -18.83449 -18.07991 -17.90844 -17.76070 -16.97774 -16.77258 -16.61668 -16.46463 -15.97876 -15.87479 -15.56878 -14.79088 -14.19392 -14.08200 -14.00877 -13.90068 -13.61685 -13.51905 -13.01138 -12.92838 -12.91794 -12.86830 -12.74275 -12.25683 -12.03956 -11.89149 -11.51288 -11.33684 -11.16287 -10.83743 -10.55266 -9.87942 -8.31733 -6.48562 -0.93591 1.40881 1.42396 1.46105 1.56485 1.84997 2.20604 2.34785 2.43325 2.66135 3.02230 3.09432 3.13908 3.34445 3.74822 3.90260 4.09474 4.15321 4.26134 4.35738 4.42633 4.60432 4.69923 4.81393 4.95291 4.95726 5.05821 5.19722 5.43988 5.62786 5.81305 6.61349 6.78607 7.18926 7.36245 8.80841 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027785 B = 0.005033 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.479086 B = 5562.309596 C = 6035.253548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.391 3.609 3 O -0.969 6.969 4 O -0.985 6.985 5 C -0.586 4.586 6 C -0.152 4.152 7 C 0.503 3.497 8 O -0.566 6.566 9 N -0.703 5.703 10 C 0.266 3.734 11 C -0.558 4.558 12 H 0.078 0.922 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.986 3.014 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.277 1.277 19 C 0.074 3.926 20 O -0.385 6.385 21 C 0.030 3.970 22 H 0.168 0.832 23 H 0.137 0.863 24 H 0.145 0.855 25 H 0.157 0.843 26 H 0.200 0.800 27 H 0.407 0.593 28 H -0.005 1.005 29 H -0.014 1.014 30 H 0.270 0.730 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.502 14.717 10.633 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.579 3.421 3 O -0.966 6.966 4 O -0.982 6.982 5 C -0.715 4.715 6 C -0.157 4.157 7 C 0.288 3.712 8 O -0.445 6.445 9 N -0.354 5.354 10 C 0.143 3.857 11 C -0.596 4.596 12 H 0.096 0.904 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.809 3.191 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.203 1.203 19 C -0.003 4.003 20 O -0.304 6.304 21 C -0.047 4.047 22 H 0.186 0.814 23 H 0.155 0.845 24 H 0.163 0.837 25 H 0.175 0.825 26 H 0.218 0.782 27 H 0.244 0.756 28 H 0.013 0.987 29 H 0.004 0.996 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.154 14.368 9.547 22.314 hybrid contribution 0.473 -0.832 -0.009 0.957 sum -13.680 13.537 9.538 21.479 Atomic orbital electron populations 1.30046 1.20657 1.13743 1.13925 1.08260 0.81094 0.74684 0.78075 1.93543 1.81051 1.35007 1.86974 1.93653 1.80952 1.67477 1.56163 1.30190 0.99932 1.16816 1.24550 1.23702 0.95468 0.94968 1.01541 1.20449 0.82939 0.86841 0.81012 1.90670 1.55264 1.50657 1.47937 1.46240 1.06816 1.28811 1.53512 1.18604 0.94496 0.82808 0.89755 1.21607 0.90937 1.11609 1.35435 0.90359 1.26062 1.05111 0.94378 0.93847 1.70141 1.38405 1.13864 1.34348 0.85093 0.77104 0.78705 0.78204 1.17963 1.19950 1.20307 1.24376 0.87295 0.97758 0.90881 1.89733 1.33047 1.69088 1.38508 1.24628 0.92257 0.96198 0.91633 0.81351 0.84472 0.83653 0.82517 0.78240 0.75603 0.98672 0.99582 0.92123 0.83220 0.88560 0.89951 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -6.12 10.62 113.37 1.20 -4.91 16 2 S 2.39 52.60 4.99 -56.49 -0.28 52.32 16 3 O -0.97 -24.16 16.27 -127.37 -2.07 -26.24 16 4 O -0.99 -36.74 16.29 -120.99 -1.97 -38.71 16 5 C -0.59 -9.92 5.04 71.98 0.36 -9.56 16 6 C -0.15 -4.10 0.99 -52.23 -0.05 -4.15 16 7 C 0.50 21.09 6.56 87.66 0.58 21.67 16 8 O -0.57 -27.96 14.68 12.01 0.18 -27.79 16 9 N -0.70 -32.83 5.38 -466.80 -2.51 -35.33 16 10 C 0.27 15.51 5.43 85.63 0.46 15.98 16 11 C -0.56 -32.18 9.28 25.60 0.24 -31.95 16 12 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 13 C 0.01 0.33 5.46 84.66 0.46 0.79 16 14 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 15 Si 0.99 44.06 29.54 68.60 2.03 46.08 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 19 C 0.07 1.49 8.28 72.27 0.60 2.09 16 20 O -0.38 -10.26 11.11 -148.98 -1.66 -11.91 16 21 C 0.03 0.78 6.75 72.27 0.49 1.27 16 22 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 23 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.16 2.53 7.62 -2.39 -0.02 2.51 16 26 H 0.20 0.76 7.82 -2.39 -0.02 0.74 16 27 H 0.41 17.11 6.67 -92.70 -0.62 16.49 16 28 H 0.00 -0.30 8.14 -2.39 -0.02 -0.31 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.15 1.39 7.88 -2.39 -0.02 1.37 16 32 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 33 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 34 H 0.14 2.74 7.03 -2.38 -0.02 2.73 16 Total: -1.00 -90.52 301.08 -1.16 -91.68 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.50 Total: 16.05 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.34 Total: -8.77 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.22 Total: -92.71 kcal Atomic # 8 Polarization: -99.13 SS G_CDS: -5.52 Total: -104.65 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.28 Total: 52.32 kcal Total: -90.52 -1.16 -91.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520118728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.656 kcal (2) G-P(sol) polarization free energy of solvation -90.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds