Wall clock time and date at job start Mon Mar 30 2020 02:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 108.57608 * 2 1 4 4 O 1.42102 * 108.58056 * 228.97264 * 2 1 3 5 5 C 1.81400 * 101.92146 * 114.48545 * 2 1 3 6 6 C 1.50708 * 109.47038 * 180.02562 * 5 2 1 7 7 O 1.21277 * 120.00158 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99620 * 179.97438 * 6 5 2 9 9 C 1.47016 * 125.65396 * 359.96498 * 8 6 5 10 10 C 1.54322 * 107.27426 * 181.09348 * 9 8 6 11 11 C 1.55147 * 102.94317 * 22.18862 * 10 9 8 12 12 O 1.42906 * 111.00509 * 82.57316 * 11 10 9 13 13 C 1.50699 * 111.00588 * 206.42880 * 11 10 9 14 14 H 1.07996 * 119.99941 * 21.15342 * 13 11 10 15 15 C 1.37883 * 119.99921 * 201.15994 * 13 11 10 16 16 N 1.31516 * 119.99831 * 174.28615 * 15 13 11 17 17 Si 1.86795 * 119.99955 * 354.27951 * 15 13 11 18 18 H 1.48507 * 109.47083 * 85.92089 * 17 15 13 19 19 H 1.48501 * 109.47245 * 205.91472 * 17 15 13 20 20 H 1.48501 * 109.47680 * 325.92089 * 17 15 13 21 21 C 1.47430 * 125.64379 * 179.97438 * 8 6 5 22 22 H 1.08999 * 109.47262 * 305.51015 * 1 2 3 23 23 H 1.08994 * 109.46918 * 65.51601 * 1 2 3 24 24 H 1.08999 * 109.46749 * 185.51429 * 1 2 3 25 25 H 1.08997 * 109.47149 * 60.00163 * 5 2 1 26 26 H 1.09000 * 109.47232 * 299.99793 * 5 2 1 27 27 H 1.09006 * 109.87804 * 300.51117 * 9 8 6 28 28 H 1.09001 * 109.88266 * 61.51698 * 9 8 6 29 29 H 1.09008 * 110.71683 * 263.82343 * 10 9 8 30 30 H 1.09001 * 110.71965 * 140.55529 * 10 9 8 31 31 H 0.96693 * 113.99409 * 61.78173 * 12 11 10 32 32 H 0.97000 * 119.99637 * 180.02562 * 16 15 13 33 33 H 1.08996 * 110.36335 * 37.00512 * 21 8 6 34 34 H 1.08994 * 110.37097 * 274.67817 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8171 1.7957 7 8 4.4219 -0.4178 0.9210 8 7 4.1973 -1.3328 2.9296 9 6 3.4205 -1.8493 4.0658 10 6 4.4292 -2.3072 5.1403 11 6 5.7065 -1.5022 4.7832 12 8 5.6476 -0.1811 5.3249 13 6 6.9460 -2.2206 5.2507 14 1 6.9149 -3.2832 5.4409 15 6 8.1198 -1.5212 5.4356 16 7 9.1700 -2.1233 5.9498 17 14 8.2185 0.2814 4.9558 18 1 7.7309 1.1203 6.0800 19 1 9.6276 0.6355 4.6489 20 1 7.3754 0.5215 3.7571 21 6 5.6327 -1.4722 3.2359 22 1 -0.3634 0.5969 0.8365 23 1 -0.3633 0.4259 -0.9352 24 1 -0.3633 -1.0229 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7611 -0.1170 2.4043 27 1 2.7829 -1.0617 4.4675 28 1 2.8094 -2.6927 3.7443 29 1 4.6145 -3.3787 5.0636 30 1 4.0752 -2.0464 6.1377 31 1 5.5978 -0.1538 6.2902 32 1 9.9956 -1.6311 6.0802 33 1 6.1883 -0.6193 2.8462 34 1 6.0211 -2.4015 2.8193 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557188196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:51 Heat of formation + Delta-G solvation = -176.213252 kcal Electronic energy + Delta-G solvation = -20366.666121 eV Core-core repulsion = 17005.184362 eV Total energy + Delta-G solvation = -3361.481759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25915 -39.33798 -37.98484 -36.97961 -36.45470 -34.51165 -32.61920 -31.15161 -30.28515 -29.81956 -26.85151 -24.26079 -21.67598 -20.83935 -19.72586 -19.48340 -18.64228 -17.69853 -17.43459 -17.13928 -17.00156 -16.57959 -16.22186 -16.03225 -15.46862 -15.04443 -14.52492 -14.15873 -13.98306 -13.87608 -13.85821 -13.64747 -13.46752 -13.22116 -13.05553 -13.00058 -12.59945 -12.41032 -12.20943 -12.11612 -11.96575 -11.64756 -11.40495 -11.25978 -10.72279 -10.37427 -9.72550 -8.42040 -6.54127 -1.02257 1.35204 1.38160 1.46367 1.64370 1.81803 1.86553 2.34930 2.84472 2.92054 3.11248 3.33461 3.47136 3.79605 3.95268 4.15982 4.22594 4.27991 4.30215 4.34844 4.47777 4.67168 4.83510 4.92531 5.01299 5.07957 5.24462 5.30939 5.49044 6.01795 6.39765 6.55971 6.85850 6.98840 7.26747 8.70670 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.005010 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.155032 B = 5587.225793 C = 5898.934031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 S 2.429 3.571 3 O -0.988 6.988 4 O -0.985 6.985 5 C -0.636 4.636 6 C 0.528 3.472 7 O -0.601 6.601 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.139 4.139 11 C 0.213 3.787 12 O -0.567 6.567 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.036 3.964 16 N -0.928 5.928 17 Si 0.988 3.012 18 H -0.269 1.269 19 H -0.335 1.335 20 H -0.283 1.283 21 C 0.106 3.894 22 H 0.165 0.835 23 H 0.143 0.857 24 H 0.167 0.833 25 H 0.207 0.793 26 H 0.202 0.798 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.387 0.613 32 H 0.268 0.732 33 H 0.042 0.958 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.174 1.124 -3.173 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.771 4.771 2 S 2.614 3.386 3 O -0.985 6.985 4 O -0.982 6.982 5 C -0.764 4.764 6 C 0.317 3.683 7 O -0.484 6.484 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.177 4.177 11 C 0.172 3.828 12 O -0.377 6.377 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.166 4.166 16 N -0.566 5.566 17 Si 0.822 3.178 18 H -0.195 1.195 19 H -0.267 1.267 20 H -0.210 1.210 21 C -0.017 4.017 22 H 0.183 0.817 23 H 0.161 0.839 24 H 0.185 0.815 25 H 0.224 0.776 26 H 0.219 0.781 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.237 0.763 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.020 1.784 -4.857 24.572 hybrid contribution 0.826 0.244 0.887 1.236 sum -23.194 2.028 -3.971 23.619 Atomic orbital electron populations 1.30033 1.17752 1.15039 1.14242 1.07406 0.80922 0.74039 0.76238 1.93519 1.81928 1.36764 1.86334 1.93516 1.81891 1.67805 1.55015 1.30779 0.97886 1.19840 1.27849 1.19916 0.90241 0.77107 0.81040 1.90824 1.63138 1.51349 1.43117 1.48635 1.08381 1.59389 1.17145 1.22455 0.94340 1.00440 0.85046 1.23165 0.94010 1.00836 0.99676 1.20099 0.93911 0.80398 0.88398 1.86115 1.94723 1.29940 1.26920 1.21480 0.94459 0.96275 1.46042 0.92365 1.25694 0.95178 1.02545 0.93138 1.70039 1.03464 1.39152 1.43953 0.85097 0.72539 0.80549 0.79598 1.19522 1.26738 1.20955 1.22739 0.81318 1.00334 0.97311 0.81692 0.83882 0.81498 0.77553 0.78056 0.88235 0.87554 0.90216 0.87687 0.76290 0.92320 0.93935 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -2.32 10.62 113.37 1.20 -1.11 16 2 S 2.43 50.20 4.60 -56.49 -0.26 49.94 16 3 O -0.99 -31.67 17.94 -125.73 -2.26 -33.92 16 4 O -0.99 -30.67 17.95 -125.77 -2.26 -32.93 16 5 C -0.64 -10.30 5.48 71.24 0.39 -9.91 16 6 C 0.53 18.09 7.87 87.66 0.69 18.78 16 7 O -0.60 -27.98 15.88 -0.16 0.00 -27.98 16 8 N -0.60 -20.58 3.33 -811.75 -2.70 -23.28 16 9 C 0.10 2.20 6.49 86.73 0.56 2.76 16 10 C -0.14 -4.00 6.14 31.78 0.20 -3.80 16 11 C 0.21 8.79 0.69 -10.14 -0.01 8.79 16 12 O -0.57 -22.83 8.88 -148.98 -1.32 -24.16 16 13 C -0.54 -28.20 8.87 25.60 0.23 -27.98 16 14 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 15 C 0.04 1.99 5.46 84.66 0.46 2.45 16 16 N -0.93 -55.70 13.96 21.45 0.30 -55.41 16 17 Si 0.99 49.70 24.85 68.60 1.70 51.41 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.34 -17.52 7.11 99.48 0.71 -16.82 16 20 H -0.28 -14.95 5.23 99.48 0.52 -14.43 16 21 C 0.11 4.67 5.79 86.86 0.50 5.18 16 22 H 0.16 -0.36 8.14 -2.39 -0.02 -0.38 16 23 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.17 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.21 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.20 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.34 7.97 -2.38 -0.02 2.32 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.39 12.83 9.02 -74.06 -0.67 12.16 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.04 2.19 6.10 -2.39 -0.01 2.18 16 34 H 0.07 3.23 8.03 -2.39 -0.02 3.21 16 Total: -1.00 -96.61 296.78 -2.30 -98.92 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.26 Total: 2.25 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 4.23 Total: -4.85 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.40 Total: -78.68 kcal Atomic # 8 Polarization: -113.15 SS G_CDS: -5.84 Total: -118.99 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.70 Total: 51.41 kcal Atomic # 16 Polarization: 50.20 SS G_CDS: -0.26 Total: 49.94 kcal Total: -96.61 -2.30 -98.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557188196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.298 kcal (2) G-P(sol) polarization free energy of solvation -96.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds