Wall clock time and date at job start Mon Mar 30 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48497 * 109.46984 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46869 * 119.99903 * 3 2 1 7 7 C 1.40120 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.46162 * 120.00331 * 0.02562 * 7 2 1 10 10 O 1.21739 * 119.99497 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99840 * 179.97438 * 9 7 2 12 12 C 1.39538 * 119.99538 * 185.27668 * 11 9 7 13 13 C 1.39087 * 120.01139 * 33.47483 * 12 11 9 14 14 C 1.38332 * 120.12682 * 179.97438 * 13 12 11 15 15 F 1.35104 * 119.92189 * 179.72396 * 14 13 12 16 16 C 1.38384 * 120.15362 * 0.02562 * 14 13 12 17 17 C 1.39340 * 120.02223 * 359.97438 * 16 14 13 18 18 C 1.48460 * 120.06468 * 180.02562 * 17 16 14 19 19 N 1.34047 * 126.67246 * 179.68801 * 18 17 16 20 20 N 1.28990 * 107.26635 * 179.83058 * 19 18 17 21 21 N 1.28732 * 108.94668 * 0.43481 * 20 19 18 22 22 H 0.96996 * 125.34319 * 179.68636 * 21 20 19 23 23 N 1.28870 * 109.31314 * 359.72319 * 21 20 19 24 24 C 1.38824 * 120.01053 * 213.45612 * 12 11 9 25 25 H 0.97006 * 120.00028 * 0.02562 * 1 2 3 26 26 H 0.96990 * 120.00012 * 5.28292 * 11 9 7 27 27 H 1.08004 * 119.93465 * 0.02562 * 13 12 11 28 28 H 1.08003 * 119.98647 * 180.02562 * 16 14 13 29 29 H 1.07996 * 120.07627 * 0.04667 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0069 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2762 -2.4793 0.0005 10 8 0.0588 -2.4793 0.0005 11 7 1.9501 -3.6465 0.0005 12 6 1.2568 -4.8523 -0.1106 13 6 0.0959 -4.9196 -0.8737 14 6 -0.5929 -6.1139 -0.9859 15 9 -1.7232 -6.1732 -1.7237 16 6 -0.1305 -7.2466 -0.3392 17 6 1.0319 -7.1863 0.4269 18 6 1.5292 -8.4010 1.1206 19 7 2.6283 -8.4946 1.8822 20 7 2.7026 -9.7129 2.2992 21 7 1.7080 -10.3785 1.8248 22 1 1.5349 -11.3193 1.9851 23 7 0.9789 -9.5987 1.1030 24 6 1.7258 -5.9854 0.5401 25 1 -0.4850 0.8401 -0.0004 26 1 2.9169 -3.6482 0.0779 27 1 -0.2679 -4.0378 -1.3802 28 1 -0.6702 -8.1777 -0.4290 29 1 2.6268 -5.9349 1.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581856810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:51 Heat of formation + Delta-G solvation = 66.674771 kcal Electronic energy + Delta-G solvation = -19950.824707 eV Core-core repulsion = 16405.556608 eV Total energy + Delta-G solvation = -3545.268098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.47801 -44.50090 -39.32714 -37.14456 -34.45204 -33.94343 -32.96334 -32.50020 -30.10942 -29.18776 -26.38169 -24.79000 -24.48108 -22.10395 -21.85306 -20.02086 -19.14780 -17.86469 -17.19018 -17.02142 -15.96269 -15.81939 -15.43719 -15.16488 -14.86510 -14.55103 -14.06018 -13.92768 -13.07988 -12.70833 -12.62912 -12.38706 -12.21964 -11.64571 -11.41195 -11.40495 -11.26297 -11.14776 -11.08786 -10.77636 -10.67200 -10.41504 -9.41836 -8.96674 -8.37438 -7.86470 -7.35737 -6.41555 -4.89618 0.78699 1.20462 1.58384 2.15387 2.46126 3.06497 3.11952 3.13701 3.59584 3.91395 3.96429 4.13516 4.38467 4.41648 4.85088 5.16518 5.35077 5.39998 5.45483 5.55838 5.70917 5.88406 6.18538 6.27152 6.50539 6.52019 6.76716 7.11012 7.23157 7.60227 7.85861 8.05176 8.09231 8.78081 9.08242 10.27835 10.48580 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.004132 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.640511 B = 6775.341285 C = 7687.384041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.540 3.460 10 O -0.558 6.558 11 N -0.694 5.694 12 C 0.221 3.779 13 C -0.143 4.143 14 C 0.116 3.884 15 F -0.139 7.139 16 C -0.161 4.161 17 C 0.020 3.980 18 C 0.233 3.767 19 N -0.265 5.265 20 N -0.054 5.054 21 N -0.232 5.232 22 H 0.474 0.526 23 N -0.295 5.295 24 C -0.140 4.140 25 H 0.274 0.726 26 H 0.399 0.601 27 H 0.156 0.844 28 H 0.136 0.864 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 -15.528 0.941 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.347 3.653 10 O -0.439 6.439 11 N -0.337 5.337 12 C 0.120 3.880 13 C -0.166 4.166 14 C 0.096 3.904 15 F -0.118 7.118 16 C -0.183 4.183 17 C 0.016 3.984 18 C -0.047 4.047 19 N -0.138 5.138 20 N -0.049 5.049 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.147 5.147 24 C -0.164 4.164 25 H 0.085 0.915 26 H 0.233 0.767 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.998 -15.617 1.298 15.955 hybrid contribution 0.269 0.336 -0.151 0.456 sum 3.267 -15.282 1.147 15.669 Atomic orbital electron populations 1.69966 1.07190 1.28124 1.33153 1.25760 0.94741 1.00621 0.92504 0.86305 0.79781 0.80366 0.79669 1.19060 1.20371 1.19058 1.20815 0.93906 0.88792 1.53539 0.90785 1.18440 0.87521 0.81993 0.77300 1.90659 1.13631 1.85819 1.53823 1.44259 1.09998 1.03869 1.75596 1.17421 0.92366 0.86709 0.91475 1.21492 0.96983 0.97586 1.00543 1.17210 0.84586 0.94062 0.94531 1.91480 1.48433 1.97059 1.74819 1.20728 0.97849 0.98430 1.01312 1.16475 0.95524 0.87851 0.98519 1.23628 0.90833 0.92201 0.98010 1.76116 1.17418 1.08162 1.12064 1.78899 1.09428 0.99621 1.16966 1.47711 1.15080 1.14416 1.30503 0.67235 1.74954 1.21256 1.02498 1.15944 1.20908 1.02711 0.91120 1.01672 0.91519 0.76681 0.82620 0.84609 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.36 11.82 55.55 0.66 -20.70 15 2 C 0.09 2.23 5.50 -17.35 -0.10 2.14 15 3 Si 0.91 18.94 29.56 -169.99 -5.02 13.92 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.53 -13.98 9.53 -35.70 -0.34 -14.32 15 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 15 9 C 0.54 14.24 7.47 -13.08 -0.10 14.15 15 10 O -0.56 -16.69 12.70 5.15 0.07 -16.63 15 11 N -0.69 -14.57 5.32 -11.23 -0.06 -14.63 15 12 C 0.22 4.32 6.27 -83.82 -0.53 3.79 15 13 C -0.14 -2.92 8.62 -39.23 -0.34 -3.26 15 14 C 0.12 2.08 7.29 -39.49 -0.29 1.79 15 15 F -0.14 -2.49 17.26 2.25 0.04 -2.45 15 16 C -0.16 -2.52 9.68 -39.12 -0.38 -2.90 15 17 C 0.02 0.32 5.87 -104.93 -0.62 -0.29 15 18 C 0.23 3.37 7.93 -156.30 -1.24 2.13 15 19 N -0.26 -3.83 12.23 32.16 0.39 -3.44 15 20 N -0.05 -0.64 13.47 60.35 0.81 0.17 15 21 N -0.23 -2.09 7.90 60.35 0.48 -1.62 15 22 H 0.47 1.76 8.96 -340.37 -3.05 -1.29 15 23 N -0.30 -3.58 12.08 32.17 0.39 -3.20 15 24 C -0.14 -2.33 9.62 -39.02 -0.38 -2.71 15 25 H 0.27 7.03 8.29 -40.82 -0.34 6.69 15 26 H 0.40 7.03 8.79 -40.82 -0.36 6.67 15 27 H 0.16 3.64 6.41 -52.48 -0.34 3.30 15 28 H 0.14 1.86 7.88 -52.48 -0.41 1.45 15 29 H 0.14 2.10 7.88 -52.49 -0.41 1.69 15 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -32.77 277.50 -6.48 -39.25 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.12 Total: 4.64 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -4.29 Total: 0.51 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 2.67 Total: -43.41 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.07 Total: -16.63 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.77 -6.48 -39.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581856810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.924 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds