Wall clock time and date at job start Mon Mar 30 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86802 * 119.99992 * 2 1 4 4 H 1.48497 * 109.46984 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46869 * 119.99903 * 3 2 1 7 7 C 1.40120 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99768 * 179.97438 * 7 2 1 9 9 C 1.46162 * 120.00331 * 0.02562 * 7 2 1 10 10 O 1.21739 * 119.99497 * 359.97438 * 9 7 2 11 11 N 1.34776 * 119.99840 * 179.97438 * 9 7 2 12 12 C 1.39538 * 119.99538 * 185.27668 * 11 9 7 13 13 C 1.39087 * 120.01139 * 33.47483 * 12 11 9 14 14 C 1.38332 * 120.12682 * 179.97438 * 13 12 11 15 15 F 1.35104 * 119.92189 * 179.72396 * 14 13 12 16 16 C 1.38384 * 120.15362 * 0.02562 * 14 13 12 17 17 C 1.39340 * 120.02223 * 359.97438 * 16 14 13 18 18 C 1.48460 * 120.06468 * 180.02562 * 17 16 14 19 19 N 1.34047 * 126.67246 * 179.68801 * 18 17 16 20 20 N 1.28990 * 107.26635 * 179.83058 * 19 18 17 21 21 N 1.28732 * 108.94668 * 0.43481 * 20 19 18 22 22 H 0.96996 * 125.34319 * 179.68636 * 21 20 19 23 23 N 1.28870 * 109.31314 * 359.72319 * 21 20 19 24 24 C 1.38824 * 120.01053 * 213.45612 * 12 11 9 25 25 H 0.97006 * 120.00028 * 0.02562 * 1 2 3 26 26 H 0.96990 * 120.00012 * 5.28292 * 11 9 7 27 27 H 1.08004 * 119.93465 * 0.02562 * 13 12 11 28 28 H 1.08003 * 119.98647 * 180.02562 * 16 14 13 29 29 H 1.07996 * 120.07627 * 0.04667 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2753 2.7465 -0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0069 -1.2135 0.0005 8 1 3.0870 -1.2135 0.0001 9 6 1.2762 -2.4793 0.0005 10 8 0.0588 -2.4793 0.0005 11 7 1.9501 -3.6465 0.0005 12 6 1.2568 -4.8523 -0.1106 13 6 0.0959 -4.9196 -0.8737 14 6 -0.5929 -6.1139 -0.9859 15 9 -1.7232 -6.1732 -1.7237 16 6 -0.1305 -7.2466 -0.3392 17 6 1.0319 -7.1863 0.4269 18 6 1.5292 -8.4010 1.1206 19 7 2.6283 -8.4946 1.8822 20 7 2.7026 -9.7129 2.2992 21 7 1.7080 -10.3785 1.8248 22 1 1.5349 -11.3193 1.9851 23 7 0.9789 -9.5987 1.1030 24 6 1.7258 -5.9854 0.5401 25 1 -0.4850 0.8401 -0.0004 26 1 2.9169 -3.6482 0.0779 27 1 -0.2679 -4.0378 -1.3802 28 1 -0.6702 -8.1777 -0.4290 29 1 2.6268 -5.9349 1.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581856810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:51 Heat of formation + Delta-G solvation = 42.289206 kcal Electronic energy + Delta-G solvation = -19951.882144 eV Core-core repulsion = 16405.556608 eV Total energy + Delta-G solvation = -3546.325536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.92701 -45.48184 -40.91450 -38.87508 -35.72931 -35.26863 -34.59528 -34.15450 -31.43754 -30.76707 -28.29045 -25.94368 -25.58242 -23.65876 -23.18657 -21.62699 -20.20237 -19.61507 -18.55433 -18.15135 -17.69627 -17.24954 -17.07981 -16.62167 -16.40946 -16.04099 -15.66520 -15.08887 -14.72834 -14.53528 -14.16677 -13.68804 -13.45312 -13.22538 -12.94069 -12.79345 -12.75331 -12.61440 -12.40287 -12.15824 -12.08790 -12.00752 -11.03036 -10.82346 -10.01333 -9.65624 -8.98258 -8.36755 -6.94511 -0.41859 0.15020 0.17162 1.21856 1.39928 1.43031 1.45529 1.57605 2.20665 2.32346 2.45356 2.67398 2.82285 3.02982 3.46641 3.58686 3.90603 4.02472 4.10427 4.24531 4.36725 4.49424 4.82390 5.06078 5.17219 5.24839 5.27999 5.60924 5.64023 5.77701 6.13912 6.20795 6.78543 7.10004 7.28661 8.32140 8.56250 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.004132 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.640511 B = 6775.341285 C = 7687.384041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.529 3.471 10 O -0.605 6.605 11 N -0.687 5.687 12 C 0.200 3.800 13 C -0.168 4.168 14 C 0.113 3.887 15 F -0.141 7.141 16 C -0.139 4.139 17 C 0.031 3.969 18 C 0.216 3.784 19 N -0.287 5.287 20 N -0.053 5.053 21 N -0.196 5.196 22 H 0.496 0.504 23 N -0.285 5.285 24 C -0.124 4.124 25 H 0.278 0.722 26 H 0.414 0.586 27 H 0.116 0.884 28 H 0.164 0.836 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -17.335 1.726 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.596 4.596 8 H 0.115 0.885 9 C 0.336 3.664 10 O -0.490 6.490 11 N -0.331 5.331 12 C 0.101 3.899 13 C -0.191 4.191 14 C 0.093 3.907 15 F -0.120 7.120 16 C -0.161 4.161 17 C 0.027 3.973 18 C -0.064 4.064 19 N -0.159 5.159 20 N -0.047 5.047 21 N -0.047 5.047 22 H 0.356 0.644 23 N -0.138 5.138 24 C -0.148 4.148 25 H 0.088 0.912 26 H 0.251 0.749 27 H 0.134 0.866 28 H 0.182 0.818 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.643 -17.506 2.090 18.232 hybrid contribution -0.249 0.590 -0.362 0.736 sum 4.394 -16.916 1.727 17.563 Atomic orbital electron populations 1.70136 1.09561 1.29504 1.34824 1.27006 0.95546 1.05042 0.91143 0.85014 0.78169 0.74437 0.80419 1.17732 1.20080 1.17680 1.21382 0.95204 0.89305 1.53716 0.88497 1.18746 0.87172 0.83673 0.76762 1.90621 1.15621 1.86993 1.55781 1.43751 1.10623 1.03326 1.75424 1.17513 0.92615 0.87001 0.92802 1.21263 0.98415 0.97379 1.02044 1.17211 0.84481 0.93985 0.95032 1.91471 1.48509 1.97044 1.74951 1.20922 0.97419 0.98313 0.99427 1.16541 0.94933 0.88208 0.97664 1.23293 0.91641 0.92348 0.99155 1.76109 1.17775 1.09378 1.12635 1.78864 1.09886 0.99077 1.16922 1.47784 1.13484 1.15175 1.28278 0.64405 1.74905 1.21170 1.01933 1.15811 1.20971 1.02915 0.90286 1.00581 0.91198 0.74877 0.86644 0.81833 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.64 11.82 21.85 0.26 -47.39 15 2 C 0.03 1.56 5.50 85.33 0.47 2.03 15 3 Si 1.00 38.88 29.56 68.60 2.03 40.90 15 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 5 H -0.28 -10.47 7.11 99.48 0.71 -9.76 15 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.56 -29.87 9.53 24.79 0.24 -29.63 15 8 H 0.10 4.52 7.85 -2.91 -0.02 4.49 15 9 C 0.53 29.09 7.47 86.30 0.64 29.74 15 10 O -0.60 -38.40 12.70 -4.47 -0.06 -38.45 15 11 N -0.69 -29.66 5.32 -307.65 -1.64 -31.30 15 12 C 0.20 7.98 6.27 38.26 0.24 8.22 15 13 C -0.17 -7.20 8.62 22.50 0.19 -7.01 15 14 C 0.11 4.07 7.29 22.33 0.16 4.23 15 15 F -0.14 -5.11 17.26 44.97 0.78 -4.33 15 16 C -0.14 -4.10 9.68 22.57 0.22 -3.88 15 17 C 0.03 0.90 5.87 -20.06 -0.12 0.78 15 18 C 0.22 5.60 7.93 137.38 1.09 6.69 15 19 N -0.29 -7.53 12.23 -52.18 -0.64 -8.17 15 20 N -0.05 -1.08 13.47 37.02 0.50 -0.58 15 21 N -0.20 -2.79 7.90 37.02 0.29 -2.50 15 22 H 0.50 1.59 8.96 -347.54 -3.12 -1.52 15 23 N -0.29 -5.88 12.08 -52.13 -0.63 -6.51 15 24 C -0.12 -4.01 9.62 22.63 0.22 -3.79 15 25 H 0.28 14.84 8.29 -92.70 -0.77 14.07 15 26 H 0.41 14.71 8.79 -92.72 -0.82 13.89 15 27 H 0.12 5.90 6.41 -2.91 -0.02 5.88 15 28 H 0.16 3.94 7.88 -2.91 -0.02 3.91 15 29 H 0.16 4.47 7.88 -2.91 -0.02 4.44 15 Total: -1.00 -74.18 277.50 1.58 -72.60 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -2.67 Total: 18.35 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 3.36 Total: 7.38 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -1.85 Total: -96.44 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.06 Total: -38.45 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Total: -74.18 1.58 -72.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581856810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.889 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds