Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47035 * 2 1 4 4 C 1.36942 * 119.99732 * 293.71865 * 3 2 1 5 5 H 1.08003 * 120.00022 * 149.40612 * 4 3 2 6 6 C 1.38816 * 119.99958 * 329.40020 * 4 3 2 7 7 N 1.31617 * 119.99915 * 337.52228 * 6 4 3 8 8 Si 1.86796 * 119.99957 * 157.52185 * 6 4 3 9 9 H 1.48500 * 109.47015 * 90.00016 * 8 6 4 10 10 H 1.48500 * 109.47437 * 210.00006 * 8 6 4 11 11 H 1.48501 * 109.47334 * 330.00414 * 8 6 4 12 12 S 1.65592 * 120.00222 * 113.72377 * 3 2 1 13 13 O 1.42099 * 104.27690 * 333.92267 * 12 3 2 14 14 O 1.42103 * 104.27912 * 206.06592 * 12 3 2 15 15 C 1.81397 * 104.45460 * 89.99709 * 12 3 2 16 16 H 1.09005 * 112.90410 * 311.25144 * 15 12 3 17 17 C 1.53777 * 113.61696 * 82.49807 * 15 12 3 18 18 C 1.53777 * 87.08276 * 139.98526 * 17 15 12 19 19 H 1.08997 * 113.61354 * 89.11538 * 18 17 15 20 20 C 1.50705 * 113.69439 * 220.01249 * 18 17 15 21 21 O 1.20823 * 119.99699 * 97.53352 * 20 18 17 22 22 O 1.34229 * 119.99633 * 277.53391 * 20 18 17 23 23 C 1.53781 * 113.61720 * 180.02562 * 15 12 3 24 24 H 1.08996 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47061 * 300.00447 * 1 2 3 26 26 H 1.09000 * 109.46949 * 60.00525 * 1 2 3 27 27 H 1.08995 * 109.46899 * 239.99243 * 2 1 3 28 28 H 1.09000 * 109.46949 * 119.99475 * 2 1 3 29 29 H 0.97007 * 119.99549 * 179.97438 * 7 6 4 30 30 H 1.09009 * 113.61397 * 25.43920 * 17 15 12 31 31 H 1.08999 * 113.69777 * 254.54616 * 17 15 12 32 32 H 0.96700 * 116.99572 * 179.97438 * 22 20 18 33 33 H 1.09001 * 113.61628 * 105.46847 * 23 15 12 34 34 H 1.09001 * 113.61160 * 334.56181 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7968 2.1857 -1.0858 5 1 1.6836 3.2517 -0.9540 6 6 1.7178 1.6312 -2.3559 7 7 2.2724 0.4627 -2.5995 8 14 0.8244 2.5433 -3.7194 9 1 1.7814 3.4254 -4.4345 10 1 0.2459 1.5638 -4.6739 11 1 -0.2643 3.3661 -3.1338 12 16 2.8383 1.9696 1.3129 13 8 2.3669 1.1859 2.4005 14 8 2.6120 3.3717 1.2679 15 6 4.5787 1.5943 0.9652 16 1 4.7361 0.5614 0.6547 17 6 5.2595 2.6238 0.0479 18 6 6.5000 2.4869 0.9462 19 1 7.1827 1.6980 0.6306 20 6 7.2004 3.7940 1.2150 21 8 6.9820 4.3969 2.2390 22 8 8.0666 4.2883 0.3167 23 6 5.5417 2.0585 2.0706 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2169 0.0750 -3.4870 30 1 4.8008 3.6120 0.0845 31 1 5.4162 2.2674 -0.9702 32 1 8.4910 5.1299 0.5331 33 1 5.9257 1.2444 2.6853 34 1 5.1602 2.8920 2.6604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = -138.436049 kcal Electronic energy + Delta-G solvation = -20693.034563 eV Core-core repulsion = 17333.190946 eV Total energy + Delta-G solvation = -3359.843617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42789 -37.73629 -36.13392 -35.92155 -35.67345 -34.50177 -31.85023 -29.25641 -27.29494 -25.50745 -24.92889 -22.18686 -21.55659 -19.38745 -18.34017 -18.07848 -17.36787 -16.68724 -16.34361 -15.71211 -15.01422 -14.98745 -14.77034 -14.28634 -13.50122 -13.15881 -12.91452 -12.38110 -12.24208 -12.12772 -11.96247 -11.69182 -11.42615 -11.29379 -11.12291 -11.00188 -10.93967 -10.72129 -10.68609 -10.51429 -10.34924 -10.20929 -10.16895 -9.80442 -9.40283 -9.22885 -7.88457 -6.56389 -4.10882 1.60908 2.29427 3.06310 3.13724 3.16781 3.21593 3.87800 4.20374 4.51976 4.66718 4.77680 4.82460 5.06780 5.28790 5.46698 5.64760 5.88708 5.90307 5.99114 6.11697 6.26074 6.29551 6.35732 6.41696 6.53710 6.62520 6.71455 6.95624 7.18183 7.32881 7.54123 7.98453 8.28351 8.66354 9.14455 10.32775 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019987 B = 0.007069 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.576163 B = 3960.019559 C = 4771.578215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.109 3.891 3 N -0.800 5.800 4 C -0.237 4.237 5 H 0.111 0.889 6 C 0.037 3.963 7 N -0.825 5.825 8 Si 0.919 3.081 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.264 1.264 12 S 2.481 3.519 13 O -1.002 7.002 14 O -0.980 6.980 15 C -0.644 4.644 16 H 0.135 0.865 17 C -0.073 4.073 18 C -0.106 4.106 19 H 0.124 0.876 20 C 0.487 3.513 21 O -0.516 6.516 22 O -0.516 6.516 23 C -0.092 4.092 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.274 0.726 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.404 0.596 33 H 0.082 0.918 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -0.153 -0.506 6.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 N -0.624 5.624 4 C -0.385 4.385 5 H 0.128 0.872 6 C -0.176 4.176 7 N -0.464 5.464 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.188 1.188 12 S 2.582 3.418 13 O -0.992 6.992 14 O -0.970 6.970 15 C -0.742 4.742 16 H 0.153 0.847 17 C -0.111 4.111 18 C -0.125 4.125 19 H 0.142 0.858 20 C 0.330 3.670 21 O -0.404 6.404 22 O -0.327 6.327 23 C -0.131 4.131 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.262 0.738 33 H 0.100 0.900 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.772 -0.112 0.585 5.802 hybrid contribution 0.717 0.533 -0.904 1.271 sum 6.489 0.421 -0.319 6.511 Atomic orbital electron populations 1.21876 0.97113 0.99710 1.01730 1.21432 0.93951 0.83441 1.02922 1.53741 1.54363 1.20027 1.34286 1.19808 1.40673 0.93378 0.84659 0.87196 1.25708 0.96721 0.96587 0.98575 1.69897 1.36860 1.17026 1.22605 0.86037 0.80236 0.79448 0.79904 1.19809 1.20431 1.18786 1.13467 0.76153 0.75046 0.77169 1.93337 1.78725 1.71177 1.55953 1.93357 1.83807 1.32549 1.87279 1.32513 1.31137 1.07229 1.03366 0.84680 1.22303 0.91497 0.99292 0.98007 1.22681 0.96352 0.91995 1.01492 0.85793 1.23646 0.75743 0.87465 0.80174 1.90695 1.61736 1.60409 1.27600 1.84587 1.55502 1.42419 1.50220 1.22529 0.94691 1.01246 0.94616 0.93635 0.93769 0.92217 0.87801 0.92487 0.91506 0.88413 0.89003 0.73753 0.89971 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.96 37.16 0.37 -2.50 16 2 C 0.11 2.34 5.78 -4.04 -0.02 2.31 16 3 N -0.80 -18.50 2.91 -59.91 -0.17 -18.68 16 4 C -0.24 -5.63 8.63 -15.06 -0.13 -5.76 16 5 H 0.11 2.68 7.26 -52.48 -0.38 2.30 16 6 C 0.04 0.84 4.64 -17.43 -0.08 0.76 16 7 N -0.83 -18.68 11.06 55.49 0.61 -18.07 16 8 Si 0.92 17.92 29.61 -169.99 -5.03 12.89 16 9 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 10 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 12 S 2.48 56.82 5.33 -107.50 -0.57 56.25 16 13 O -1.00 -24.90 16.65 -57.54 -0.96 -25.86 16 14 O -0.98 -25.01 16.00 -57.54 -0.92 -25.93 16 15 C -0.64 -12.03 4.51 -25.92 -0.12 -12.14 16 16 H 0.14 2.34 8.14 -51.93 -0.42 1.92 16 17 C -0.07 -1.28 7.19 -25.92 -0.19 -1.47 16 18 C -0.11 -1.62 4.26 -90.94 -0.39 -2.00 16 19 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 20 C 0.49 7.53 7.86 36.01 0.28 7.81 16 21 O -0.52 -9.45 16.66 -18.75 -0.31 -9.76 16 22 O -0.52 -6.30 13.42 -39.25 -0.53 -6.82 16 23 C -0.09 -1.58 7.00 -25.90 -0.18 -1.76 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.21 7.42 -51.93 -0.39 0.83 16 27 H 0.10 2.29 5.52 -51.93 -0.29 2.00 16 28 H 0.06 1.17 7.01 -51.93 -0.36 0.81 16 29 H 0.27 5.84 8.31 -40.82 -0.34 5.50 16 30 H 0.10 1.86 7.38 -51.92 -0.38 1.48 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.40 3.06 9.10 45.56 0.41 3.48 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.72 7.40 -51.93 -0.38 1.34 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -30.12 301.03 -7.24 -37.36 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.44 Total: 8.82 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.45 Total: -14.74 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.44 Total: -36.74 kcal Atomic # 8 Polarization: -65.66 SS G_CDS: -2.72 Total: -68.37 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 56.82 SS G_CDS: -0.57 Total: 56.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.12 -7.24 -37.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.077 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds