Wall clock time and date at job start Mon Mar 30 2020 01:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86810 * 119.99431 * 2 1 4 4 H 1.48498 * 109.47150 * 269.99528 * 3 2 1 5 5 H 1.48499 * 109.47118 * 30.00027 * 3 2 1 6 6 H 1.48497 * 109.46814 * 149.99766 * 3 2 1 7 7 C 1.37874 * 120.00548 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99845 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99894 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46940 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47242 * 179.97438 * 10 9 7 12 12 O 1.42090 * 110.54191 * 68.37351 * 11 10 9 13 13 O 1.42103 * 110.53992 * 291.62509 * 11 10 9 14 14 N 1.65599 * 104.44771 * 180.02562 * 11 10 9 15 15 C 1.46494 * 120.00331 * 65.00406 * 14 11 10 16 16 C 1.53780 * 113.61649 * 144.99877 * 15 14 11 17 17 C 1.53776 * 87.08391 * 89.19691 * 16 15 14 18 18 C 1.50700 * 113.61608 * 139.98003 * 17 16 15 19 19 O 1.20822 * 119.99958 * 1.52893 * 18 17 16 20 20 O 1.34234 * 120.00068 * 181.53085 * 18 17 16 21 21 C 1.53786 * 87.17529 * 25.38941 * 17 16 15 22 22 H 0.96995 * 120.00483 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47039 * 60.00274 * 9 7 2 24 24 H 1.09000 * 109.46907 * 299.99753 * 9 7 2 25 25 H 1.09010 * 109.47045 * 59.99821 * 10 9 7 26 26 H 1.08997 * 109.46999 * 300.00176 * 10 9 7 27 27 H 0.97004 * 119.99236 * 244.99546 * 14 11 10 28 28 H 1.08999 * 112.85473 * 13.79490 * 15 14 11 29 29 H 1.08995 * 113.61228 * 334.64653 * 16 15 14 30 30 H 1.09003 * 113.61203 * 203.74768 * 16 15 14 31 31 H 1.09000 * 113.61979 * 270.80261 * 17 16 15 32 32 H 0.96698 * 117.00153 * 179.97438 * 20 18 17 33 33 H 1.08999 * 113.61104 * 89.15358 * 21 17 16 34 34 H 1.08994 * 113.61609 * 220.06183 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1938 0.0011 10 6 4.0218 -2.6362 0.0023 11 16 5.8358 -2.6361 0.0022 12 8 6.3343 -2.1447 1.2387 13 8 6.3343 -2.1467 -1.2352 14 7 6.2490 -4.2397 0.0028 15 6 5.9127 -5.0833 -1.1467 16 6 6.9662 -6.1622 -1.4483 17 6 6.1910 -7.0768 -0.4852 18 6 6.0906 -8.5043 -0.9577 19 8 6.6190 -8.8368 -1.9921 20 8 5.4140 -9.4063 -0.2294 21 6 4.9464 -6.2326 -0.8063 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6798 0.8911 24 1 3.8752 -0.6801 -0.8889 25 1 3.6587 -3.1507 -0.8876 26 1 3.6581 -3.1495 0.8924 27 1 6.7139 -4.6204 0.7643 28 1 5.6153 -4.5065 -2.0225 29 1 7.9659 -5.9063 -1.0977 30 1 6.9544 -6.5069 -2.4823 31 1 6.5176 -6.9961 0.5516 32 1 5.3768 -10.3093 -0.5732 33 1 4.3815 -6.5966 -1.6645 34 1 4.3180 -6.0334 0.0617 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:17 Heat of formation + Delta-G solvation = -181.783929 kcal Electronic energy + Delta-G solvation = -19539.252714 eV Core-core repulsion = 16177.529392 eV Total energy + Delta-G solvation = -3361.723322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67861 -39.57125 -38.11409 -37.03926 -36.99965 -35.85229 -33.77607 -33.43163 -27.86135 -27.66421 -26.69514 -23.15132 -23.03651 -20.79091 -20.18409 -19.45787 -19.08224 -18.55862 -17.58883 -17.22956 -16.97468 -16.74295 -16.35930 -16.17101 -15.26728 -15.14158 -14.81288 -14.60114 -14.01575 -13.75864 -13.55838 -13.37147 -13.19327 -13.09796 -13.03473 -12.90297 -12.54126 -12.44377 -12.19989 -11.95304 -11.86141 -11.72270 -11.66005 -11.33192 -11.18644 -10.81533 -10.35997 -8.33672 -6.38896 -0.68179 1.19876 1.34253 1.36555 1.45975 1.79296 2.19909 2.32008 2.79544 3.00875 3.27470 3.35026 3.44456 3.71779 3.89214 4.02463 4.11938 4.27662 4.48272 4.62331 4.64444 4.77439 4.85226 4.99827 5.04930 5.12765 5.17906 5.38362 5.51260 5.64580 6.14688 6.20096 6.67875 7.02661 7.25669 8.81768 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027342 B = 0.004218 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.835244 B = 6637.253362 C = 7284.305769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.013 3.987 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.524 4.524 8 H 0.051 0.949 9 C -0.020 4.020 10 C -0.588 4.588 11 S 2.625 3.375 12 O -0.993 6.993 13 O -0.991 6.991 14 N -1.087 6.087 15 C 0.115 3.885 16 C -0.120 4.120 17 C -0.110 4.110 18 C 0.493 3.507 19 O -0.551 6.551 20 O -0.513 6.513 21 C -0.136 4.136 22 H 0.269 0.731 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.428 0.572 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.425 0.575 33 H 0.105 0.895 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.261 -16.789 -0.080 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.059 4.059 10 C -0.719 4.719 11 S 2.721 3.279 12 O -0.983 6.983 13 O -0.980 6.980 14 N -0.847 5.847 15 C 0.007 3.993 16 C -0.159 4.159 17 C -0.128 4.128 18 C 0.338 3.662 19 O -0.441 6.441 20 O -0.326 6.326 21 C -0.176 4.176 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.161 0.839 26 H 0.162 0.838 27 H 0.265 0.735 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.287 0.713 33 H 0.124 0.876 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.824 -15.574 -0.348 20.828 hybrid contribution -0.607 -0.408 0.068 0.735 sum 13.217 -15.983 -0.279 20.741 Atomic orbital electron populations 1.70004 1.07904 1.28298 1.51908 1.25857 0.95576 1.02961 0.94122 0.86051 0.79970 0.79564 0.79798 1.18643 1.20203 1.17193 1.21197 0.90334 0.93839 1.50967 0.93027 1.19387 0.97127 0.91480 0.97868 1.30311 1.22884 1.05859 1.12856 1.04380 0.77728 0.72982 0.72845 1.93527 1.79364 1.79017 1.46380 1.93531 1.78463 1.79243 1.46812 1.55089 1.73549 1.28264 1.27807 1.21807 0.97083 0.91945 0.88513 1.23303 0.99120 0.92779 1.00742 1.22685 1.01053 0.85493 1.03615 1.23597 0.73049 0.88870 0.80734 1.90713 1.46096 1.81309 1.26024 1.84539 1.68859 1.25285 1.53940 1.23559 0.95563 0.93951 1.04486 0.92223 0.95017 0.95053 0.83891 0.83786 0.73511 0.86662 0.88747 0.87745 0.83519 0.71327 0.87650 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.92 43.04 27.47 68.60 1.88 44.92 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.52 -28.65 9.66 25.60 0.25 -28.41 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C -0.02 -0.87 4.05 29.85 0.12 -0.75 16 10 C -0.59 -18.88 6.01 71.98 0.43 -18.44 16 11 S 2.62 76.11 5.43 -56.49 -0.31 75.81 16 12 O -0.99 -34.69 18.08 -127.65 -2.31 -37.00 16 13 O -0.99 -34.73 17.58 -127.65 -2.24 -36.98 16 14 N -1.09 -20.02 5.62 -166.95 -0.94 -20.95 16 15 C 0.11 1.86 4.40 45.58 0.20 2.07 16 16 C -0.12 -1.73 7.18 31.12 0.22 -1.51 16 17 C -0.11 -1.39 4.08 -11.01 -0.04 -1.43 16 18 C 0.49 7.85 7.85 71.24 0.56 8.40 16 19 O -0.55 -12.39 16.67 21.98 0.37 -12.03 16 20 O -0.51 -6.05 13.42 -51.46 -0.69 -6.74 16 21 C -0.14 -1.81 7.44 31.18 0.23 -1.58 16 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 23 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 24 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 25 H 0.14 4.03 8.14 -2.38 -0.02 4.01 16 26 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 27 H 0.43 5.74 8.76 -96.75 -0.85 4.89 16 28 H 0.12 1.96 7.76 -2.39 -0.02 1.94 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.66 7.45 -2.39 -0.02 1.64 16 31 H 0.15 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.43 1.70 9.10 -74.06 -0.67 1.03 16 33 H 0.11 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -78.61 308.04 -1.94 -80.55 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -0.44 Total: 9.58 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 2.43 Total: -40.44 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -0.64 Total: -77.68 kcal Atomic # 8 Polarization: -87.87 SS G_CDS: -4.88 Total: -92.74 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Atomic # 16 Polarization: 76.11 SS G_CDS: -0.31 Total: 75.81 kcal Total: -78.61 -1.94 -80.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.230 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds