Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47115 * 299.99798 * 3 2 1 6 6 H 1.48506 * 109.47283 * 60.00065 * 3 2 1 7 7 C 1.38817 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99719 * 155.67063 * 7 2 1 9 9 N 1.36940 * 119.99884 * 335.66585 * 7 2 1 10 10 C 1.46502 * 120.00064 * 353.45917 * 9 7 2 11 11 C 1.50697 * 109.46915 * 89.86545 * 10 9 7 12 12 O 1.20830 * 119.99912 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99644 * 173.46135 * 9 7 2 15 15 C 1.53000 * 109.47078 * 269.99915 * 14 9 7 16 16 H 1.08999 * 109.63994 * 305.70030 * 15 14 9 17 17 C 1.53871 * 109.64589 * 66.13367 * 15 14 9 18 18 C 1.54976 * 106.65877 * 167.15025 * 17 15 14 19 19 S 1.83284 * 102.47822 * 317.38263 * 18 17 15 20 20 O 1.42094 * 109.35324 * 269.89756 * 19 18 17 21 21 O 1.42104 * 109.47273 * 136.73358 * 19 18 17 22 22 C 1.54164 * 109.64217 * 185.27453 * 15 14 9 23 23 H 0.97003 * 119.99384 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47148 * 329.86611 * 10 9 7 25 25 H 1.08995 * 109.47227 * 209.86528 * 10 9 7 26 26 H 0.96704 * 117.00348 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47149 * 30.00450 * 14 9 7 28 28 H 1.09006 * 109.46849 * 150.00093 * 14 9 7 29 29 H 1.09008 * 110.02554 * 286.32330 * 17 15 14 30 30 H 1.09001 * 110.02937 * 47.74153 * 17 15 14 31 31 H 1.09004 * 110.75896 * 199.17338 * 18 17 15 32 32 H 1.09004 * 111.06683 * 75.73539 * 18 17 15 33 33 H 1.08996 * 110.32587 * 331.14175 * 22 15 14 34 34 H 1.09004 * 110.31963 * 93.23642 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0183 -1.2439 -0.3848 9 7 1.4167 -2.3352 0.4897 10 6 0.1077 -2.2530 1.1425 11 6 -0.9787 -2.4284 0.1130 12 8 -0.6893 -2.6035 -1.0470 13 8 -2.2679 -2.3900 0.4847 14 6 2.0908 -3.6294 0.3603 15 6 1.6781 -4.2900 -0.9566 16 1 0.5912 -4.3496 -1.0117 17 6 2.2117 -3.4633 -2.1395 18 6 2.0505 -4.3432 -3.4051 19 16 2.5986 -5.9896 -2.8151 20 8 3.9972 -6.1242 -3.0271 21 8 1.7100 -6.9867 -3.3005 22 6 2.2796 -5.7072 -1.0362 23 1 -0.4849 0.8401 0.0004 24 1 0.0010 -1.2796 1.6212 25 1 0.0265 -3.0384 1.8939 26 1 -2.9292 -2.5071 -0.2112 27 1 3.1704 -3.4793 0.3689 28 1 1.8068 -4.2720 1.1938 29 1 1.6302 -2.5476 -2.2474 30 1 3.2630 -3.2220 -1.9823 31 1 2.6946 -3.9859 -4.2086 32 1 1.0106 -4.3751 -3.7302 33 1 3.2111 -5.7555 -0.4723 34 1 1.5694 -6.4417 -0.6562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -136.351934 kcal Electronic energy + Delta-G solvation = -20955.797703 eV Core-core repulsion = 17596.044460 eV Total energy + Delta-G solvation = -3359.753243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.89695 -37.23677 -36.76799 -35.78334 -34.95833 -34.31572 -31.46916 -29.87242 -27.76892 -26.13547 -23.95089 -22.20401 -20.56043 -19.60750 -18.59610 -17.12801 -16.79101 -16.45768 -16.13386 -15.45076 -15.27393 -15.09964 -14.24765 -14.02296 -13.76891 -13.55226 -13.38004 -13.18450 -12.14498 -11.95951 -11.84827 -11.76059 -11.67065 -11.54326 -11.31252 -11.06605 -10.84975 -10.69778 -10.59342 -10.30778 -10.19737 -10.08463 -9.84691 -9.72826 -9.21550 -8.63060 -7.29519 -6.07619 -3.33671 0.33981 2.78598 3.27176 3.36918 3.38039 3.80504 3.84469 4.22297 4.24534 4.48082 4.79002 5.00013 5.08887 5.11246 5.18340 5.40728 5.47182 5.72774 5.86428 5.97087 6.19903 6.26618 6.31826 6.39189 6.76389 6.85933 6.99203 7.03345 7.56305 7.80271 8.00633 8.87796 9.34510 9.57711 9.96841 11.03252 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.006684 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.785416 B = 4187.851860 C = 4885.293340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.250 4.250 8 H 0.085 0.915 9 N -0.568 5.568 10 C 0.183 3.817 11 C 0.480 3.520 12 O -0.519 6.519 13 O -0.543 6.543 14 C 0.156 3.844 15 C -0.106 4.106 16 H 0.097 0.903 17 C -0.099 4.099 18 C -0.576 4.576 19 S 2.370 3.630 20 O -0.952 6.952 21 O -0.957 6.957 22 C -0.583 4.583 23 H 0.258 0.742 24 H 0.121 0.879 25 H 0.051 0.949 26 H 0.380 0.620 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -7.028 0.718 7.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.287 5.287 10 C 0.054 3.946 11 C 0.320 3.680 12 O -0.405 6.405 13 O -0.354 6.354 14 C 0.028 3.972 15 C -0.128 4.128 16 H 0.115 0.885 17 C -0.138 4.138 18 C -0.707 4.707 19 S 2.557 3.443 20 O -0.949 6.949 21 O -0.954 6.954 22 C -0.714 4.714 23 H 0.069 0.931 24 H 0.138 0.862 25 H 0.069 0.931 26 H 0.235 0.765 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.617 -7.695 0.211 7.866 hybrid contribution -0.585 1.570 -0.452 1.735 sum 1.033 -6.125 -0.241 6.217 Atomic orbital electron populations 1.69839 1.05263 1.25935 1.53911 1.24745 0.95246 0.98433 1.01303 0.86152 0.79376 0.83553 0.77286 1.20225 1.21987 1.21441 1.19340 0.96877 0.84870 1.36771 0.89721 1.44266 1.15701 1.02980 1.65773 1.20587 0.80968 1.02804 0.90261 1.25329 0.81455 0.69545 0.91659 1.90451 1.82765 1.46244 1.21080 1.84643 1.19003 1.86278 1.45428 1.21049 0.97023 0.86422 0.92734 1.22492 1.02392 0.88162 0.99756 0.88508 1.22176 1.02905 1.00884 0.87824 1.30503 1.12015 1.20258 1.07948 1.09524 0.75511 0.78768 0.80495 1.93568 1.30239 1.86344 1.84787 1.93557 1.66594 1.56400 1.78820 1.30546 1.10783 1.07236 1.22846 0.93143 0.86178 0.93080 0.76463 0.92102 0.93177 0.85962 0.90781 0.85382 0.84981 0.84959 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.31 8.98 55.49 0.50 -22.81 16 2 C 0.00 0.01 4.95 -17.43 -0.09 -0.08 16 3 Si 0.91 20.08 29.62 -169.99 -5.03 15.04 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.25 -5.87 8.13 -15.06 -0.12 -6.00 16 8 H 0.09 1.95 7.93 -52.49 -0.42 1.53 16 9 N -0.57 -11.93 2.01 -174.61 -0.35 -12.28 16 10 C 0.18 3.81 5.59 -5.19 -0.03 3.78 16 11 C 0.48 10.33 6.34 36.00 0.23 10.56 16 12 O -0.52 -12.23 14.05 -18.75 -0.26 -12.49 16 13 O -0.54 -10.21 13.42 -39.24 -0.53 -10.74 16 14 C 0.16 2.64 5.07 -4.04 -0.02 2.62 16 15 C -0.11 -1.69 2.28 -89.56 -0.20 -1.90 16 16 H 0.10 1.74 5.98 -51.93 -0.31 1.43 16 17 C -0.10 -1.65 4.92 -25.23 -0.12 -1.78 16 18 C -0.58 -8.05 7.31 38.20 0.28 -7.77 16 19 S 2.37 33.32 6.10 -107.50 -0.66 32.67 16 20 O -0.95 -15.96 18.14 -57.73 -1.05 -17.00 16 21 O -0.96 -16.29 18.15 -57.73 -1.05 -17.34 16 22 C -0.58 -7.33 6.74 37.77 0.25 -7.07 16 23 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 24 H 0.12 2.77 6.14 -51.93 -0.32 2.45 16 25 H 0.05 0.90 7.89 -51.93 -0.41 0.49 16 26 H 0.38 5.67 9.10 45.56 0.41 6.09 16 27 H 0.06 0.98 7.99 -51.93 -0.42 0.56 16 28 H 0.05 0.75 7.89 -51.93 -0.41 0.34 16 29 H 0.12 2.53 6.89 -51.92 -0.36 2.18 16 30 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.13 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.13 1.43 7.89 -51.93 -0.41 1.02 16 34 H 0.13 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -32.25 291.66 -7.31 -39.56 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.46 Total: 8.63 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.18 Total: -7.63 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.15 Total: -35.10 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -2.89 Total: -57.57 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.04 kcal Atomic # 16 Polarization: 33.32 SS G_CDS: -0.66 Total: 32.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.25 -7.31 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.792 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds