Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00190 * 2 1 4 4 H 1.48499 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47115 * 299.99798 * 3 2 1 6 6 H 1.48506 * 109.47283 * 60.00065 * 3 2 1 7 7 C 1.38817 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99719 * 155.67063 * 7 2 1 9 9 N 1.36940 * 119.99884 * 335.66585 * 7 2 1 10 10 C 1.46502 * 120.00064 * 353.45917 * 9 7 2 11 11 C 1.50697 * 109.46915 * 89.86545 * 10 9 7 12 12 O 1.20830 * 119.99912 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99644 * 173.46135 * 9 7 2 15 15 C 1.53000 * 109.47078 * 269.99915 * 14 9 7 16 16 H 1.08999 * 109.63994 * 305.70030 * 15 14 9 17 17 C 1.53871 * 109.64589 * 66.13367 * 15 14 9 18 18 C 1.54976 * 106.65877 * 167.15025 * 17 15 14 19 19 S 1.83284 * 102.47822 * 317.38263 * 18 17 15 20 20 O 1.42094 * 109.35324 * 269.89756 * 19 18 17 21 21 O 1.42104 * 109.47273 * 136.73358 * 19 18 17 22 22 C 1.54164 * 109.64217 * 185.27453 * 15 14 9 23 23 H 0.97003 * 119.99384 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47148 * 329.86611 * 10 9 7 25 25 H 1.08995 * 109.47227 * 209.86528 * 10 9 7 26 26 H 0.96704 * 117.00348 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47149 * 30.00450 * 14 9 7 28 28 H 1.09006 * 109.46849 * 150.00093 * 14 9 7 29 29 H 1.09008 * 110.02554 * 286.32330 * 17 15 14 30 30 H 1.09001 * 110.02937 * 47.74153 * 17 15 14 31 31 H 1.09004 * 110.75896 * 199.17338 * 18 17 15 32 32 H 1.09004 * 111.06683 * 75.73539 * 18 17 15 33 33 H 1.08996 * 110.32587 * 331.14175 * 22 15 14 34 34 H 1.09004 * 110.31963 * 93.23642 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0183 -1.2439 -0.3848 9 7 1.4167 -2.3352 0.4897 10 6 0.1077 -2.2530 1.1425 11 6 -0.9787 -2.4284 0.1130 12 8 -0.6893 -2.6035 -1.0470 13 8 -2.2679 -2.3900 0.4847 14 6 2.0908 -3.6294 0.3603 15 6 1.6781 -4.2900 -0.9566 16 1 0.5912 -4.3496 -1.0117 17 6 2.2117 -3.4633 -2.1395 18 6 2.0505 -4.3432 -3.4051 19 16 2.5986 -5.9896 -2.8151 20 8 3.9972 -6.1242 -3.0271 21 8 1.7100 -6.9867 -3.3005 22 6 2.2796 -5.7072 -1.0362 23 1 -0.4849 0.8401 0.0004 24 1 0.0010 -1.2796 1.6212 25 1 0.0265 -3.0384 1.8939 26 1 -2.9292 -2.5071 -0.2112 27 1 3.1704 -3.4793 0.3689 28 1 1.8068 -4.2720 1.1938 29 1 1.6302 -2.5476 -2.2474 30 1 3.2630 -3.2220 -1.9823 31 1 2.6946 -3.9859 -4.2086 32 1 1.0106 -4.3751 -3.7302 33 1 3.2111 -5.7555 -0.4723 34 1 1.5694 -6.4417 -0.6562 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071897.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -160.664040 kcal Electronic energy + Delta-G solvation = -20956.851955 eV Core-core repulsion = 17596.044460 eV Total energy + Delta-G solvation = -3360.807495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51868 -38.63106 -38.02257 -37.04663 -36.46615 -35.95275 -33.13508 -31.13210 -29.31874 -27.64461 -25.32016 -23.73375 -22.09116 -21.00122 -19.75794 -18.79118 -18.40101 -17.74227 -17.42567 -16.90379 -16.77561 -16.52212 -15.92525 -15.45787 -15.15194 -14.87279 -14.80113 -14.62110 -13.55611 -13.33010 -13.22547 -13.15043 -13.04056 -13.00176 -12.72196 -12.65343 -12.34881 -12.17334 -12.07613 -11.92499 -11.70973 -11.66730 -11.24636 -11.05260 -10.85934 -10.41425 -8.99367 -7.91208 -5.14952 -0.80080 1.49057 1.55534 1.61650 1.66399 2.14494 2.52121 2.70505 2.89587 3.11583 3.32992 3.50323 3.77323 3.89589 4.03777 4.08506 4.23218 4.61564 4.65225 4.72143 4.82853 4.98055 5.05853 5.10433 5.30246 5.34756 5.47805 5.62184 5.72342 6.25880 6.27736 7.09388 7.70563 7.90175 8.21801 9.17920 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.006684 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.785416 B = 4187.851860 C = 4885.293340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.051 4.051 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.310 1.310 6 H -0.294 1.294 7 C -0.235 4.235 8 H 0.088 0.912 9 N -0.579 5.579 10 C 0.180 3.820 11 C 0.479 3.521 12 O -0.544 6.544 13 O -0.540 6.540 14 C 0.147 3.853 15 C -0.104 4.104 16 H 0.078 0.922 17 C -0.101 4.101 18 C -0.574 4.574 19 S 2.396 3.604 20 O -0.976 6.976 21 O -0.985 6.985 22 C -0.563 4.563 23 H 0.246 0.754 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.398 0.602 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -8.541 1.487 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.245 4.245 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.238 1.238 6 H -0.221 1.221 7 C -0.365 4.365 8 H 0.105 0.895 9 N -0.299 5.299 10 C 0.051 3.949 11 C 0.321 3.679 12 O -0.433 6.433 13 O -0.351 6.351 14 C 0.020 3.980 15 C -0.126 4.126 16 H 0.096 0.904 17 C -0.140 4.140 18 C -0.705 4.705 19 S 2.584 3.416 20 O -0.973 6.973 21 O -0.982 6.982 22 C -0.696 4.696 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.255 0.745 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.532 -9.237 0.974 9.627 hybrid contribution -0.889 1.980 -0.677 2.274 sum 1.643 -7.256 0.297 7.446 Atomic orbital electron populations 1.69976 1.06033 1.25213 1.56425 1.25254 0.95789 1.00511 1.02964 0.85383 0.78963 0.81099 0.75959 1.19197 1.23848 1.22111 1.19567 0.96816 0.85734 1.34338 0.89453 1.44399 1.15944 1.03999 1.65513 1.20568 0.80935 1.02704 0.90676 1.25450 0.82243 0.68864 0.91365 1.90447 1.83337 1.47501 1.22059 1.84576 1.18649 1.85798 1.46091 1.21328 0.97397 0.85149 0.94093 1.22299 1.01448 0.89941 0.98905 0.90388 1.22063 1.02612 0.99716 0.89578 1.30490 1.12508 1.19859 1.07602 1.08685 0.74211 0.77757 0.80908 1.93536 1.31574 1.86610 1.85592 1.93521 1.67155 1.57551 1.79985 1.30407 1.12621 1.05358 1.21166 0.94418 0.88656 0.89581 0.74461 0.90875 0.90356 0.90343 0.89826 0.83761 0.85068 0.82157 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.73 8.98 21.65 0.19 -48.54 16 2 C -0.05 -2.53 4.95 84.86 0.42 -2.11 16 3 Si 0.96 41.79 29.62 68.60 2.03 43.83 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.31 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.23 -10.87 8.13 84.03 0.68 -10.19 16 8 H 0.09 3.92 7.93 -2.91 -0.02 3.90 16 9 N -0.58 -23.49 2.01 -706.35 -1.42 -24.91 16 10 C 0.18 7.30 5.59 85.63 0.48 7.78 16 11 C 0.48 20.33 6.34 71.24 0.45 20.78 16 12 O -0.54 -25.66 14.05 21.95 0.31 -25.36 16 13 O -0.54 -19.76 13.42 -51.35 -0.69 -20.45 16 14 C 0.15 4.53 5.07 86.38 0.44 4.97 16 15 C -0.10 -3.07 2.28 -10.11 -0.02 -3.09 16 16 H 0.08 2.67 5.98 -2.39 -0.01 2.65 16 17 C -0.10 -3.24 4.92 31.56 0.16 -3.08 16 18 C -0.57 -15.30 7.31 72.66 0.53 -14.77 16 19 S 2.40 61.88 6.10 -56.49 -0.34 61.54 16 20 O -0.98 -30.42 18.14 -127.47 -2.31 -32.73 16 21 O -0.98 -31.72 18.15 -127.47 -2.31 -34.03 16 22 C -0.56 -12.00 6.74 72.38 0.49 -11.51 16 23 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 24 H 0.10 4.40 6.14 -2.39 -0.01 4.38 16 25 H 0.09 2.82 7.89 -2.39 -0.02 2.80 16 26 H 0.40 11.46 9.10 -74.05 -0.67 10.78 16 27 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 28 H 0.08 1.99 7.89 -2.38 -0.02 1.97 16 29 H 0.08 3.28 6.89 -2.38 -0.02 3.26 16 30 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 31 H 0.14 3.32 8.14 -2.38 -0.02 3.30 16 32 H 0.13 3.54 8.14 -2.38 -0.02 3.52 16 33 H 0.16 2.64 7.89 -2.39 -0.02 2.62 16 34 H 0.15 2.66 8.14 -2.38 -0.02 2.64 16 Total: -1.00 -69.06 291.66 -0.47 -69.53 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.45 Total: 22.34 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 3.62 Total: -11.22 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.23 Total: -73.45 kcal Atomic # 8 Polarization: -107.56 SS G_CDS: -5.01 Total: -112.57 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 61.88 SS G_CDS: -0.34 Total: 61.54 kcal Total: -69.06 -0.47 -69.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071897.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.130 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds