Wall clock time and date at job start Mon Mar 30 2020 01:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00171 * 2 1 4 4 H 1.48501 * 109.47263 * 89.99923 * 3 2 1 5 5 H 1.48499 * 109.47210 * 210.00217 * 3 2 1 6 6 H 1.48502 * 109.47298 * 330.00594 * 3 2 1 7 7 C 1.38810 * 119.99648 * 180.28147 * 2 1 3 8 8 H 1.07998 * 119.99728 * 220.33852 * 7 2 1 9 9 N 1.36933 * 120.00211 * 40.33196 * 7 2 1 10 10 C 1.46496 * 120.00127 * 30.32512 * 9 7 2 11 11 C 1.50703 * 109.47185 * 86.30932 * 10 9 7 12 12 O 1.20831 * 119.99905 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99924 * 210.31740 * 9 7 2 15 15 C 1.53008 * 109.46953 * 90.00703 * 14 9 7 16 16 H 1.09003 * 109.63857 * 305.70167 * 15 14 9 17 17 C 1.53875 * 109.64805 * 185.27114 * 15 14 9 18 18 C 1.55050 * 106.62157 * 192.96703 * 17 15 14 19 19 S 1.83288 * 102.56901 * 42.43317 * 18 17 15 20 20 O 1.42093 * 109.35347 * 90.18416 * 19 18 17 21 21 O 1.42102 * 109.34821 * 223.25611 * 19 18 17 22 22 C 1.54168 * 109.64458 * 66.12515 * 15 14 9 23 23 H 0.97000 * 119.99910 * 185.71563 * 1 2 3 24 24 H 1.08999 * 109.47384 * 206.30754 * 10 9 7 25 25 H 1.09005 * 109.46877 * 326.31230 * 10 9 7 26 26 H 0.96704 * 116.99820 * 179.97438 * 13 11 10 27 27 H 1.08997 * 109.47193 * 209.99775 * 14 9 7 28 28 H 1.09000 * 109.47711 * 330.00668 * 14 9 7 29 29 H 1.09001 * 110.02607 * 312.25459 * 17 15 14 30 30 H 1.08994 * 110.02599 * 73.67526 * 17 15 14 31 31 H 1.08997 * 110.78923 * 160.70666 * 18 17 15 32 32 H 1.09004 * 110.78497 * 283.97060 * 18 17 15 33 33 H 1.08998 * 110.32198 * 266.66298 * 22 15 14 34 34 H 1.08999 * 110.31762 * 28.86248 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 2.8976 -1.3163 0.5990 9 7 1.5696 -2.2433 -0.7785 10 6 0.8574 -1.9762 -2.0305 11 6 1.8537 -1.7958 -3.1467 12 8 3.0374 -1.8819 -2.9197 13 8 1.4263 -1.5393 -4.3930 14 6 1.8107 -3.6243 -0.3532 15 6 0.6409 -4.1042 0.5084 16 1 0.4831 -3.4083 1.3324 17 6 0.9493 -5.5048 1.0659 18 6 -0.3821 -6.0582 1.6363 19 16 -1.5982 -5.5717 0.3542 20 8 -1.7050 -6.6089 -0.6112 21 8 -2.7682 -5.0664 0.9826 22 6 -0.6361 -4.1874 -0.3514 23 1 -0.4850 -0.8359 0.0837 24 1 0.2012 -2.8154 -2.2614 25 1 0.2629 -1.0688 -1.9238 26 1 2.1027 -1.4310 -5.0755 27 1 1.9018 -4.2642 -1.2309 28 1 2.7322 -3.6702 0.2272 29 1 1.3114 -6.1529 0.2677 30 1 1.6946 -5.4354 1.8581 31 1 -0.3388 -7.1427 1.7369 32 1 -0.6165 -5.5916 2.5931 33 1 -1.2028 -3.2592 -0.2784 34 1 -0.3800 -4.3947 -1.3904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:21 Heat of formation + Delta-G solvation = -168.886937 kcal Electronic energy + Delta-G solvation = -20617.295926 eV Core-core repulsion = 17256.131859 eV Total energy + Delta-G solvation = -3361.164067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99316 -38.88745 -38.03528 -37.08828 -36.90847 -36.28916 -33.35418 -30.94510 -29.76284 -27.60531 -25.53693 -23.75347 -22.07930 -21.42639 -19.79858 -19.31916 -18.87215 -17.78411 -17.69334 -17.03266 -16.86370 -16.56842 -16.11629 -15.78783 -15.44385 -15.13750 -14.98631 -14.56370 -13.97629 -13.62736 -13.29921 -13.22070 -13.08676 -12.92180 -12.84791 -12.67986 -12.59651 -12.32407 -12.03471 -12.00705 -11.85926 -11.70488 -11.46058 -11.43875 -11.07861 -10.37363 -9.03439 -8.36664 -5.41508 -0.82490 1.44388 1.53225 1.60294 1.66500 1.80111 2.27251 2.61622 2.70570 3.05982 3.11310 3.38568 3.55576 3.77446 3.94783 3.98191 4.20571 4.36413 4.54919 4.62775 4.66691 4.74756 4.79796 4.88111 4.92912 5.08239 5.23942 5.37914 5.76298 5.96785 6.34290 6.92332 7.23045 7.66449 8.09622 8.84765 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.006358 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.459455 B = 4402.621319 C = 4945.734535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.041 4.041 3 Si 1.074 2.926 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.368 4.368 8 H 0.039 0.961 9 N -0.570 5.570 10 C 0.137 3.863 11 C 0.446 3.554 12 O -0.544 6.544 13 O -0.524 6.524 14 C 0.155 3.845 15 C -0.097 4.097 16 H 0.078 0.922 17 C -0.111 4.111 18 C -0.558 4.558 19 S 2.391 3.609 20 O -0.976 6.976 21 O -0.988 6.988 22 C -0.576 4.576 23 H 0.268 0.732 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.412 0.588 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.125 0.875 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -11.032 -0.290 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.244 4.244 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.497 4.497 8 H 0.057 0.943 9 N -0.290 5.290 10 C 0.007 3.993 11 C 0.286 3.714 12 O -0.433 6.433 13 O -0.336 6.336 14 C 0.029 3.971 15 C -0.119 4.119 16 H 0.096 0.904 17 C -0.150 4.150 18 C -0.691 4.691 19 S 2.580 3.420 20 O -0.973 6.973 21 O -0.986 6.986 22 C -0.707 4.707 23 H 0.078 0.922 24 H 0.128 0.872 25 H 0.106 0.894 26 H 0.272 0.728 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.566 -9.836 -0.230 9.855 hybrid contribution 1.420 -0.720 -0.324 1.625 sum 0.854 -10.556 -0.554 10.605 Atomic orbital electron populations 1.70912 1.07670 1.30132 1.44521 1.26445 0.95837 1.03639 0.98469 0.83442 0.74678 0.74506 0.77290 1.20460 1.22255 1.21220 1.19671 1.07848 0.94813 1.27376 0.94279 1.43637 1.66765 1.02419 1.16154 1.20834 0.92378 1.04062 0.82034 1.26227 0.90944 0.70752 0.83447 1.90589 1.20586 1.48286 1.83853 1.84618 1.45994 1.83174 1.19834 1.21109 0.95478 0.83948 0.96534 1.22140 0.93910 0.97910 0.97971 0.90396 1.22304 0.96243 0.93769 1.02673 1.30418 1.11021 1.12564 1.15070 1.08819 0.77612 0.77165 0.78366 1.93539 1.87477 1.55440 1.60839 1.93537 1.47453 1.80912 1.76659 1.30501 1.10838 1.18163 1.11162 0.92245 0.87217 0.89382 0.72786 0.92072 0.92701 0.87877 0.86902 0.81861 0.83189 0.85634 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.18 12.22 21.65 0.26 -47.91 16 2 C -0.04 -2.15 4.51 84.86 0.38 -1.77 16 3 Si 1.07 49.16 30.05 68.60 2.06 51.22 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.37 -18.81 9.19 84.03 0.77 -18.04 16 8 H 0.04 2.11 8.06 -2.91 -0.02 2.09 16 9 N -0.57 -24.71 1.76 -706.34 -1.24 -25.96 16 10 C 0.14 5.59 5.38 85.63 0.46 6.05 16 11 C 0.45 17.98 8.38 71.24 0.60 18.58 16 12 O -0.54 -25.38 17.14 21.95 0.38 -25.01 16 13 O -0.52 -16.68 13.42 -51.41 -0.69 -17.37 16 14 C 0.16 5.24 5.04 86.38 0.44 5.68 16 15 C -0.10 -2.63 2.81 -10.10 -0.03 -2.66 16 16 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 17 C -0.11 -1.96 5.80 31.59 0.18 -1.78 16 18 C -0.56 -8.78 7.31 72.68 0.53 -8.25 16 19 S 2.39 57.91 6.10 -56.49 -0.34 57.57 16 20 O -0.98 -28.71 18.14 -127.47 -2.31 -31.03 16 21 O -0.99 -32.37 18.15 -127.47 -2.31 -34.69 16 22 C -0.58 -15.17 5.46 72.38 0.40 -14.78 16 23 H 0.27 14.14 8.14 -92.71 -0.75 13.39 16 24 H 0.11 3.67 5.77 -2.39 -0.01 3.66 16 25 H 0.09 4.09 5.73 -2.38 -0.01 4.08 16 26 H 0.41 9.16 9.10 -74.05 -0.67 8.49 16 27 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 28 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 29 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.15 2.07 8.14 -2.38 -0.02 2.06 16 33 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.14 3.35 6.41 -2.39 -0.02 3.34 16 Total: -1.00 -75.09 300.20 0.00 -75.09 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.47 Total: 15.05 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 3.73 Total: -16.97 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -0.98 Total: -73.87 kcal Atomic # 8 Polarization: -103.15 SS G_CDS: -4.94 Total: -108.09 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.06 Total: 51.22 kcal Atomic # 16 Polarization: 57.91 SS G_CDS: -0.34 Total: 57.57 kcal Total: -75.09 0.00 -75.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.798 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds