Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48498 * 109.47138 * 269.99621 * 3 2 1 5 5 H 1.48499 * 109.47301 * 30.00306 * 3 2 1 6 6 H 1.48506 * 109.46814 * 150.00214 * 3 2 1 7 7 C 1.37871 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00495 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99691 * 180.02562 * 7 2 1 10 10 S 1.81403 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00037 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46955 * 179.97438 * 11 10 9 13 13 C 1.38012 * 119.55987 * 90.00561 * 12 11 10 14 14 C 1.39710 * 119.02498 * 179.97438 * 13 12 11 15 15 C 1.48450 * 120.90204 * 179.97438 * 14 13 12 16 16 N 1.34060 * 126.67404 * 0.02562 * 15 14 13 17 17 N 1.28988 * 107.26533 * 179.97438 * 16 15 14 18 18 N 1.28728 * 108.94668 * 359.97438 * 17 16 15 19 19 H 0.97006 * 125.34175 * 180.02562 * 18 17 16 20 20 N 1.28874 * 109.32071 * 359.97438 * 18 17 16 21 21 C 1.39739 * 118.19591 * 0.24784 * 14 13 12 22 22 C 1.37976 * 119.02640 * 359.50298 * 21 14 13 23 23 N 1.31905 * 119.56317 * 269.98012 * 12 11 10 24 24 H 0.96997 * 120.00026 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47268 * 59.99687 * 9 7 2 26 26 H 1.08995 * 109.46866 * 299.99625 * 9 7 2 27 27 H 1.09005 * 109.47035 * 60.00465 * 11 10 9 28 28 H 1.08994 * 109.47447 * 299.99928 * 11 10 9 29 29 H 1.07999 * 120.49302 * 359.97438 * 13 12 11 30 30 H 1.08000 * 120.48808 * 179.75133 * 21 14 13 31 31 H 1.08004 * 119.55944 * 180.25633 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1162 -2.9043 -0.0001 11 6 5.9186 -2.6998 -0.0001 12 6 6.5778 -4.0550 0.0004 13 6 6.8758 -4.6677 -1.1999 14 6 7.4874 -5.9237 -1.1864 15 6 7.8258 -6.6206 -2.4527 16 7 7.6068 -6.1718 -3.6968 17 7 8.0446 -7.0714 -4.5109 18 7 8.5237 -8.0534 -3.8303 19 1 8.9157 -8.8576 -4.2053 20 7 8.4018 -7.8002 -2.5726 21 6 7.7668 -6.5087 0.0515 22 6 7.4400 -5.8246 1.2043 23 7 6.8629 -4.6396 1.1479 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6808 0.8904 26 1 3.8751 -0.6797 -0.8894 27 1 6.2217 -2.1484 0.8900 28 1 6.2217 -2.1483 -0.8900 29 1 6.6397 -4.1833 -2.1359 30 1 8.2352 -7.4804 0.1051 31 1 7.6559 -6.2669 2.1657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349269.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = 132.082842 kcal Electronic energy + Delta-G solvation = -17378.566605 eV Core-core repulsion = 14402.347989 eV Total energy + Delta-G solvation = -2976.218616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.57017 -41.26285 -35.84632 -35.18987 -35.13255 -33.81601 -32.57913 -31.43912 -28.92607 -26.16416 -25.79676 -24.67063 -23.88516 -22.39962 -20.31217 -19.08824 -18.24113 -18.05293 -17.43387 -17.06206 -16.61121 -16.25655 -15.56333 -15.43514 -14.95586 -14.73642 -14.71221 -14.46466 -14.11265 -13.65923 -13.43582 -12.91528 -12.68683 -12.62618 -12.41030 -12.26827 -12.20280 -12.05119 -11.75902 -10.87772 -10.79814 -10.58145 -10.45852 -9.96260 -8.49429 -8.35567 -6.45528 -0.51849 -0.10707 0.09486 0.97019 1.30465 1.33558 1.36915 1.39340 1.49668 1.95909 2.31758 2.45275 2.83951 2.96555 2.97643 3.19871 3.73439 3.90798 3.94030 4.05506 4.30557 4.32390 4.38749 4.62872 4.64436 4.76709 4.79052 4.91156 5.06392 5.35018 5.54709 5.56869 6.08686 6.58360 6.92802 7.01236 7.16849 8.80552 Molecular weight = 277.07amu Principal moments of inertia in cm(-1) A = 0.027270 B = 0.003474 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.531454 B = 8057.582683 C = 8623.285459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.530 4.530 8 H 0.033 0.967 9 C 0.050 3.950 10 S -0.288 6.288 11 C -0.038 4.038 12 C 0.140 3.860 13 C -0.120 4.120 14 C 0.020 3.980 15 C 0.205 3.795 16 N -0.290 5.290 17 N -0.054 5.054 18 N -0.194 5.194 19 H 0.497 0.503 20 N -0.277 5.277 21 C -0.122 4.122 22 C 0.106 3.894 23 N -0.485 5.485 24 H 0.273 0.727 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.166 -15.871 -4.134 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.052 0.948 9 C -0.098 4.098 10 S -0.061 6.061 11 C -0.186 4.186 12 C 0.003 3.997 13 C -0.144 4.144 14 C 0.009 3.991 15 C -0.075 4.075 16 N -0.163 5.163 17 N -0.049 5.049 18 N -0.046 5.046 19 H 0.357 0.643 20 N -0.130 5.130 21 C -0.145 4.145 22 C -0.052 4.052 23 N -0.196 5.196 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.192 0.808 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 23.231 -16.305 -4.045 28.669 hybrid contribution 0.572 0.905 -0.663 1.259 sum 23.803 -15.400 -4.708 28.738 Atomic orbital electron populations 1.70026 1.08365 1.28778 1.50916 1.25921 0.95681 1.03297 0.93231 0.85594 0.79509 0.77522 0.79699 1.18458 1.20327 1.16650 1.20669 0.89539 0.93778 1.52888 0.94825 1.21239 0.98061 0.90569 0.99949 1.87056 1.03670 1.17287 1.98057 1.22186 0.93294 0.95992 1.07147 1.20226 0.95628 0.95298 0.88545 1.21956 0.97760 0.94737 0.99937 1.17589 0.99539 0.93369 0.88649 1.23475 1.00058 0.90328 0.93670 1.76160 1.18925 1.21720 0.99449 1.78919 1.10019 0.93982 1.21944 1.47831 1.37381 1.18378 1.01006 0.64316 1.74860 1.20098 1.16667 1.01390 1.22476 0.99235 1.02189 0.90603 1.23336 0.92705 0.89048 1.00102 1.67412 1.10802 1.12022 1.29350 0.91837 0.93767 0.93565 0.88034 0.86895 0.83512 0.80779 0.78340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.13 13.96 21.45 0.30 -58.83 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.96 43.04 27.47 68.60 1.88 44.92 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.53 -31.54 9.68 25.60 0.25 -31.29 16 8 H 0.03 2.27 7.96 -2.91 -0.02 2.24 16 9 C 0.05 2.41 4.77 71.24 0.34 2.75 16 10 S -0.29 -12.52 21.64 -56.49 -1.22 -13.74 16 11 C -0.04 -1.21 6.22 71.24 0.44 -0.77 16 12 C 0.14 4.07 6.04 42.49 0.26 4.32 16 13 C -0.12 -3.15 9.43 22.57 0.21 -2.94 16 14 C 0.02 0.44 5.91 -19.84 -0.12 0.32 16 15 C 0.20 4.44 7.97 137.37 1.09 5.54 16 16 N -0.29 -7.05 12.33 -52.18 -0.64 -7.70 16 17 N -0.05 -1.01 13.47 37.02 0.50 -0.51 16 18 N -0.19 -2.22 7.90 37.02 0.29 -1.93 16 19 H 0.50 0.32 8.96 -347.53 -3.12 -2.80 16 20 N -0.28 -4.47 12.18 -52.13 -0.63 -5.10 16 21 C -0.12 -2.13 9.80 22.57 0.22 -1.91 16 22 C 0.11 2.04 11.17 84.62 0.95 2.99 16 23 N -0.49 -13.42 10.26 -184.14 -1.89 -15.31 16 24 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 25 H 0.04 2.05 7.20 -2.39 -0.02 2.03 16 26 H 0.05 2.08 7.57 -2.39 -0.02 2.07 16 27 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 29 H 0.15 3.85 7.98 -2.91 -0.02 3.82 16 30 H 0.17 1.92 7.97 -2.91 -0.02 1.90 16 31 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -77.01 296.63 0.70 -76.31 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -1.99 Total: 1.34 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 4.11 Total: -19.45 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.08 Total: -89.38 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Atomic # 16 Polarization: -12.52 SS G_CDS: -1.22 Total: -13.74 kcal Total: -77.01 0.70 -76.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349269.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.389 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds