Wall clock time and date at job start Mon Mar 30 2020 01:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46956 * 270.00097 * 3 2 1 5 5 H 1.48500 * 109.47118 * 30.00448 * 3 2 1 6 6 H 1.48501 * 109.47162 * 150.00590 * 3 2 1 7 7 C 1.37881 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99876 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46971 * 180.02562 * 9 7 2 11 11 S 1.65607 * 120.00182 * 164.99707 * 10 9 7 12 12 O 1.42101 * 104.27652 * 308.92881 * 11 10 9 13 13 O 1.42093 * 104.27902 * 181.07119 * 11 10 9 14 14 C 1.81405 * 104.44602 * 64.99735 * 11 10 9 15 15 C 1.53001 * 109.46587 * 173.14708 * 14 11 10 16 16 C 1.50701 * 112.91181 * 294.23070 * 15 14 11 17 17 O 1.20822 * 119.99836 * 125.60002 * 16 15 14 18 18 O 1.34232 * 119.99626 * 305.60236 * 16 15 14 19 19 C 1.53782 * 113.61295 * 65.48687 * 15 14 11 20 20 C 1.53777 * 87.08374 * 89.11425 * 19 15 14 21 21 C 1.53776 * 87.08430 * 25.43129 * 20 19 15 22 22 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47367 * 59.99897 * 9 7 2 24 24 H 1.09000 * 109.46959 * 299.99771 * 9 7 2 25 25 H 0.97001 * 120.00192 * 344.99579 * 10 9 7 26 26 H 1.09001 * 109.47047 * 53.14984 * 14 11 10 27 27 H 1.09000 * 109.47302 * 293.14966 * 14 11 10 28 28 H 0.96701 * 116.99589 * 180.02562 * 18 16 15 29 29 H 1.08999 * 113.61290 * 334.55716 * 19 15 14 30 30 H 1.09004 * 113.68902 * 203.67366 * 19 15 14 31 31 H 1.08998 * 113.61707 * 139.98365 * 20 19 15 32 32 H 1.09006 * 113.61079 * 270.88469 * 20 19 15 33 33 H 1.09001 * 113.61635 * 89.11547 * 21 20 19 34 34 H 1.08997 * 113.61614 * 220.02668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6882 -5.1423 0.3707 12 8 0.9854 -4.9877 1.5961 13 8 2.8646 -5.9358 0.2959 14 6 0.5439 -5.5724 -0.9695 15 6 0.1260 -7.0378 -0.8325 16 6 1.2704 -7.9961 -1.0398 17 8 1.5273 -8.8218 -0.1959 18 8 2.0044 -7.9323 -2.1618 19 6 -0.6987 -7.3275 0.4328 20 6 -1.9477 -6.9937 -0.3999 21 6 -1.1326 -7.3975 -1.6398 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 3.1349 -3.4540 -0.2180 26 1 1.0370 -5.4235 -1.9301 27 1 -0.3390 -4.9358 -0.9118 28 1 2.7277 -8.5679 -2.2500 29 1 -0.5142 -6.6240 1.2447 30 1 -0.6544 -8.3676 0.7558 31 1 -2.7939 -7.6512 -0.2005 32 1 -2.2168 -5.9376 -0.3792 33 1 -1.2062 -8.4571 -1.8847 34 1 -1.2985 -6.7504 -2.5011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:16 Heat of formation + Delta-G solvation = -148.302367 kcal Electronic energy + Delta-G solvation = -20429.182955 eV Core-core repulsion = 17068.911503 eV Total energy + Delta-G solvation = -3360.271453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00338 -38.50750 -36.66259 -36.11700 -35.51582 -34.68876 -32.20733 -30.37587 -26.80728 -26.09937 -25.71636 -22.55761 -22.20390 -19.35125 -18.79090 -18.00460 -17.57672 -17.26019 -16.38442 -15.78415 -15.55791 -15.53308 -14.97823 -14.70197 -14.34272 -13.62354 -13.21800 -12.93309 -12.65387 -12.60496 -12.28326 -12.15946 -11.86872 -11.73719 -11.61779 -11.55455 -11.43759 -11.00256 -10.94952 -10.79833 -10.75058 -10.40820 -10.21491 -10.09763 -9.48211 -8.94343 -8.27458 -6.22935 -4.27450 0.64491 2.05166 2.86896 3.22711 3.25919 3.29981 3.35180 3.95582 4.01803 4.22289 4.31239 4.42980 4.53127 4.61665 4.95507 5.14298 5.22661 5.27542 5.42737 5.55853 5.66918 5.73242 5.81758 5.89979 6.16522 6.34987 6.42413 7.17159 7.26896 7.74392 7.75917 7.79929 8.12100 8.76687 9.37981 10.87557 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.005081 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.303095 B = 5509.607281 C = 5870.230211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.066 0.934 9 C 0.241 3.759 10 N -1.104 6.104 11 S 2.604 3.396 12 O -0.951 6.951 13 O -0.971 6.971 14 C -0.618 4.618 15 C -0.071 4.071 16 C 0.487 3.513 17 O -0.500 6.500 18 O -0.507 6.507 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.109 4.109 22 H 0.266 0.734 23 H 0.022 0.978 24 H 0.040 0.960 25 H 0.411 0.589 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.411 0.589 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 -13.534 -5.681 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.118 3.882 10 N -0.866 5.866 11 S 2.695 3.305 12 O -0.941 6.941 13 O -0.961 6.961 14 C -0.744 4.744 15 C -0.074 4.074 16 C 0.328 3.672 17 O -0.387 6.387 18 O -0.318 6.318 19 C -0.182 4.182 20 C -0.174 4.174 21 C -0.148 4.148 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.245 0.755 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.270 0.730 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.913 -13.890 -4.615 14.924 hybrid contribution 1.013 0.823 -0.927 1.601 sum -1.900 -13.067 -5.542 14.320 Atomic orbital electron populations 1.69922 1.06067 1.27457 1.49475 1.24975 0.95006 0.99523 0.94690 0.86394 0.79767 0.82460 0.78213 1.20463 1.20973 1.19668 1.21189 0.93513 0.89855 1.52419 0.91568 1.19140 0.87942 0.83889 0.97235 1.55504 1.19609 1.23755 1.87737 1.05001 0.75229 0.73883 0.76430 1.93577 1.76025 1.85245 1.39252 1.93554 1.45004 1.70006 1.87557 1.30640 1.19936 1.00510 1.23350 1.21464 0.91858 0.91110 1.02974 1.23060 0.81770 0.83438 0.78936 1.90710 1.67732 1.36805 1.43486 1.84489 1.45404 1.60275 1.41664 1.23433 0.94351 1.05080 0.95375 1.22849 0.96728 1.02989 0.94872 1.22932 0.91357 1.02426 0.98045 0.92397 0.96068 0.94204 0.75523 0.83548 0.83143 0.72965 0.88138 0.87546 0.90032 0.88730 0.89139 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.02 9.27 -34.44 -0.32 -14.34 16 8 H 0.07 1.69 7.65 -52.49 -0.40 1.28 16 9 C 0.24 5.79 5.89 -5.20 -0.03 5.76 16 10 N -1.10 -22.18 5.88 -11.66 -0.07 -22.25 16 11 S 2.60 48.04 5.04 -107.50 -0.54 47.50 16 12 O -0.95 -20.29 15.73 -57.54 -0.91 -21.19 16 13 O -0.97 -19.45 16.89 -57.54 -0.97 -20.42 16 14 C -0.62 -8.65 5.35 37.16 0.20 -8.45 16 15 C -0.07 -0.95 0.88 -154.84 -0.14 -1.08 16 16 C 0.49 7.05 5.96 36.01 0.21 7.26 16 17 O -0.50 -8.46 16.71 -18.75 -0.31 -8.78 16 18 O -0.51 -5.98 13.31 -39.26 -0.52 -6.50 16 19 C -0.15 -1.87 6.77 -25.92 -0.18 -2.05 16 20 C -0.14 -1.38 7.73 -25.92 -0.20 -1.58 16 21 C -0.11 -1.08 7.21 -25.92 -0.19 -1.27 16 22 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.04 1.04 7.69 -51.93 -0.40 0.64 16 25 H 0.41 7.71 8.50 -34.47 -0.29 7.42 16 26 H 0.15 1.78 8.09 -51.92 -0.42 1.36 16 27 H 0.15 1.90 7.31 -51.92 -0.38 1.52 16 28 H 0.41 3.10 9.10 45.56 0.41 3.51 16 29 H 0.10 1.47 6.05 -51.93 -0.31 1.15 16 30 H 0.11 1.30 7.52 -51.93 -0.39 0.91 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.94 7.61 -51.93 -0.40 0.54 16 33 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.09 0.78 8.10 -51.93 -0.42 0.35 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -34.17 302.54 -7.18 -41.35 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.40 Total: 8.53 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.73 Total: -14.19 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.67 Total: -46.36 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -2.71 Total: -56.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.54 Total: 47.50 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.17 -7.18 -41.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.951 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds