Wall clock time and date at job start Mon Mar 30 2020 01:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48504 * 109.46956 * 270.00097 * 3 2 1 5 5 H 1.48500 * 109.47118 * 30.00448 * 3 2 1 6 6 H 1.48501 * 109.47162 * 150.00590 * 3 2 1 7 7 C 1.37881 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99876 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46971 * 180.02562 * 9 7 2 11 11 S 1.65607 * 120.00182 * 164.99707 * 10 9 7 12 12 O 1.42101 * 104.27652 * 308.92881 * 11 10 9 13 13 O 1.42093 * 104.27902 * 181.07119 * 11 10 9 14 14 C 1.81405 * 104.44602 * 64.99735 * 11 10 9 15 15 C 1.53001 * 109.46587 * 173.14708 * 14 11 10 16 16 C 1.50701 * 112.91181 * 294.23070 * 15 14 11 17 17 O 1.20822 * 119.99836 * 125.60002 * 16 15 14 18 18 O 1.34232 * 119.99626 * 305.60236 * 16 15 14 19 19 C 1.53782 * 113.61295 * 65.48687 * 15 14 11 20 20 C 1.53777 * 87.08374 * 89.11425 * 19 15 14 21 21 C 1.53776 * 87.08430 * 25.43129 * 20 19 15 22 22 H 0.97001 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47367 * 59.99897 * 9 7 2 24 24 H 1.09000 * 109.46959 * 299.99771 * 9 7 2 25 25 H 0.97001 * 120.00192 * 344.99579 * 10 9 7 26 26 H 1.09001 * 109.47047 * 53.14984 * 14 11 10 27 27 H 1.09000 * 109.47302 * 293.14966 * 14 11 10 28 28 H 0.96701 * 116.99589 * 180.02562 * 18 16 15 29 29 H 1.08999 * 113.61290 * 334.55716 * 19 15 14 30 30 H 1.09004 * 113.68902 * 203.67366 * 19 15 14 31 31 H 1.08998 * 113.61707 * 139.98365 * 20 19 15 32 32 H 1.09006 * 113.61079 * 270.88469 * 20 19 15 33 33 H 1.09001 * 113.61635 * 89.11547 * 21 20 19 34 34 H 1.08997 * 113.61614 * 220.02668 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6882 -5.1423 0.3707 12 8 0.9854 -4.9877 1.5961 13 8 2.8646 -5.9358 0.2959 14 6 0.5439 -5.5724 -0.9695 15 6 0.1260 -7.0378 -0.8325 16 6 1.2704 -7.9961 -1.0398 17 8 1.5273 -8.8218 -0.1959 18 8 2.0044 -7.9323 -2.1618 19 6 -0.6987 -7.3275 0.4328 20 6 -1.9477 -6.9937 -0.3999 21 6 -1.1326 -7.3975 -1.6398 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 3.1349 -3.4540 -0.2180 26 1 1.0370 -5.4235 -1.9301 27 1 -0.3390 -4.9358 -0.9118 28 1 2.7277 -8.5679 -2.2500 29 1 -0.5142 -6.6240 1.2447 30 1 -0.6544 -8.3676 0.7558 31 1 -2.7939 -7.6512 -0.2005 32 1 -2.2168 -5.9376 -0.3792 33 1 -1.2062 -8.4571 -1.8847 34 1 -1.2985 -6.7504 -2.5011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:15 Heat of formation + Delta-G solvation = -175.567791 kcal Electronic energy + Delta-G solvation = -20430.365273 eV Core-core repulsion = 17068.911503 eV Total energy + Delta-G solvation = -3361.453770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.03547 -39.48623 -38.22660 -37.18352 -37.08825 -36.48683 -34.14175 -31.45637 -28.73877 -27.05216 -26.72462 -24.48707 -23.13632 -20.71922 -19.89606 -19.26597 -19.12077 -18.35608 -18.02848 -17.34926 -16.91560 -16.80308 -16.49639 -15.93906 -15.48496 -15.19397 -14.59578 -14.27984 -14.04524 -13.91606 -13.62540 -13.54238 -13.31612 -13.22872 -13.14402 -12.75243 -12.66029 -12.54562 -12.46323 -12.10911 -12.07144 -11.63580 -11.43631 -11.42207 -11.27382 -10.82050 -10.09031 -8.25590 -6.36913 -0.80405 0.95860 1.45081 1.46572 1.56859 1.77588 1.90624 2.41486 2.64247 2.99880 3.09319 3.17595 3.23982 3.36249 3.72108 4.01343 4.12032 4.29564 4.55775 4.61710 4.65073 4.72243 4.91995 4.96558 5.06608 5.25778 5.30151 5.34039 5.47785 5.73866 5.97843 6.27551 6.76095 6.84055 7.32682 8.85360 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.005081 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.303095 B = 5509.607281 C = 5870.230211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.553 4.553 8 H 0.069 0.931 9 C 0.250 3.750 10 N -1.107 6.107 11 S 2.599 3.401 12 O -0.991 6.991 13 O -0.991 6.991 14 C -0.591 4.591 15 C -0.088 4.088 16 C 0.485 3.515 17 O -0.534 6.534 18 O -0.500 6.500 19 C -0.160 4.160 20 C -0.130 4.130 21 C -0.093 4.093 22 H 0.270 0.730 23 H 0.028 0.972 24 H 0.011 0.989 25 H 0.415 0.585 26 H 0.173 0.827 27 H 0.169 0.831 28 H 0.429 0.571 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -13.595 -7.583 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.126 3.874 10 N -0.868 5.868 11 S 2.696 3.304 12 O -0.981 6.981 13 O -0.981 6.981 14 C -0.723 4.723 15 C -0.091 4.091 16 C 0.327 3.673 17 O -0.424 6.424 18 O -0.313 6.313 19 C -0.198 4.198 20 C -0.167 4.167 21 C -0.131 4.131 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.029 0.971 25 H 0.249 0.751 26 H 0.191 0.809 27 H 0.187 0.813 28 H 0.291 0.709 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.334 -13.941 -6.498 15.738 hybrid contribution 1.170 0.732 -0.363 1.427 sum -2.165 -13.209 -6.861 15.041 Atomic orbital electron populations 1.70018 1.07426 1.28476 1.50220 1.25828 0.95862 1.02989 0.94218 0.85375 0.78398 0.78152 0.78653 1.19279 1.20767 1.19351 1.21611 0.94036 0.91192 1.52406 0.91250 1.18813 0.88139 0.84387 0.96075 1.55337 1.19542 1.23738 1.88149 1.04925 0.75445 0.73040 0.77026 1.93530 1.76388 1.85442 1.42697 1.93524 1.46695 1.69754 1.88164 1.30352 1.18904 1.01777 1.21225 1.21716 0.92894 0.89895 1.04567 1.23340 0.81908 0.83120 0.78921 1.90699 1.68660 1.38360 1.44647 1.84445 1.45797 1.60770 1.40333 1.23537 0.96551 1.04667 0.95012 1.22892 0.96307 1.03664 0.93857 1.22987 0.88045 1.03952 0.98125 0.92135 0.95388 0.97074 0.75073 0.80897 0.81281 0.70902 0.90599 0.87343 0.87702 0.88606 0.87397 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.41 13.29 21.45 0.28 -51.12 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.55 -29.28 9.27 25.60 0.24 -29.04 16 8 H 0.07 3.52 7.65 -2.91 -0.02 3.50 16 9 C 0.25 12.13 5.89 85.63 0.50 12.63 16 10 N -1.11 -44.74 5.88 -190.80 -1.12 -45.86 16 11 S 2.60 96.48 5.04 -56.49 -0.28 96.19 16 12 O -0.99 -43.77 15.73 -127.65 -2.01 -45.78 16 13 O -0.99 -39.95 16.89 -127.65 -2.16 -42.11 16 14 C -0.59 -15.40 5.35 71.98 0.38 -15.02 16 15 C -0.09 -2.15 0.88 -52.40 -0.05 -2.19 16 16 C 0.48 13.28 5.96 71.24 0.42 13.71 16 17 O -0.53 -17.84 16.71 21.98 0.37 -17.47 16 18 O -0.50 -10.63 13.31 -51.44 -0.68 -11.31 16 19 C -0.16 -4.00 6.77 31.12 0.21 -3.79 16 20 C -0.13 -2.26 7.73 31.12 0.24 -2.01 16 21 C -0.09 -1.49 7.21 31.12 0.22 -1.27 16 22 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.01 0.61 7.69 -2.39 -0.02 0.59 16 25 H 0.41 15.68 8.50 -96.74 -0.82 14.86 16 26 H 0.17 3.65 8.09 -2.39 -0.02 3.63 16 27 H 0.17 3.88 7.31 -2.39 -0.02 3.86 16 28 H 0.43 5.60 9.10 -74.06 -0.67 4.93 16 29 H 0.08 2.27 6.05 -2.39 -0.01 2.26 16 30 H 0.11 2.61 7.52 -2.38 -0.02 2.59 16 31 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.65 7.61 -2.38 -0.02 1.63 16 33 H 0.11 1.42 8.09 -2.39 -0.02 1.40 16 34 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -73.97 302.54 -1.29 -75.26 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.35 Total: 24.50 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 2.64 Total: -25.91 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -0.84 Total: -96.98 kcal Atomic # 8 Polarization: -112.19 SS G_CDS: -4.48 Total: -116.68 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 96.48 SS G_CDS: -0.28 Total: 96.19 kcal Total: -73.97 -1.29 -75.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.308 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds