Wall clock time and date at job start Mon Mar 30 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47341 * 270.00277 * 3 2 1 5 5 H 1.48501 * 109.46876 * 30.00154 * 3 2 1 6 6 H 1.48491 * 109.47450 * 150.00326 * 3 2 1 7 7 C 1.38812 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00158 * 156.15822 * 7 2 1 9 9 N 1.36936 * 120.00075 * 336.15186 * 7 2 1 10 10 C 1.46498 * 119.99842 * 326.60349 * 9 7 2 11 11 C 1.50703 * 109.47195 * 276.17669 * 10 9 7 12 12 O 1.20822 * 119.99840 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99816 * 180.02562 * 11 10 9 14 14 S 1.65600 * 119.99850 * 146.59775 * 9 7 2 15 15 O 1.42110 * 104.27853 * 206.07253 * 14 9 7 16 16 O 1.42096 * 104.28247 * 333.93348 * 14 9 7 17 17 C 1.81403 * 104.44962 * 90.00557 * 14 9 7 18 18 C 1.53000 * 109.47343 * 179.97438 * 17 14 9 19 19 C 1.52996 * 109.47087 * 179.97438 * 18 17 14 20 20 C 1.53003 * 117.49860 * 243.75291 * 19 18 17 21 21 C 1.52995 * 117.49776 * 175.09081 * 19 18 17 22 22 H 0.96990 * 120.00751 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47528 * 36.18326 * 10 9 7 24 24 H 1.09007 * 109.46710 * 156.17780 * 10 9 7 25 25 H 0.96708 * 116.99549 * 180.02562 * 13 11 10 26 26 H 1.08999 * 109.46618 * 300.00221 * 17 14 9 27 27 H 1.08997 * 109.47192 * 59.99512 * 17 14 9 28 28 H 1.08996 * 109.47266 * 300.00440 * 18 17 14 29 29 H 1.09007 * 109.46616 * 60.00191 * 18 17 14 30 30 H 1.09004 * 115.55306 * 29.41839 * 19 18 17 31 31 H 1.08993 * 117.50153 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.50167 * 145.02473 * 20 19 18 33 33 H 1.09002 * 117.49700 * 214.97568 * 21 19 18 34 34 H 1.08997 * 117.50174 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0212 -1.2418 -0.3786 9 7 1.4133 -2.3376 0.4784 10 6 0.4604 -2.2520 1.5878 11 6 1.2107 -2.2385 2.8947 12 8 2.4176 -2.2941 2.8989 13 8 0.5381 -2.1646 4.0539 14 16 1.7686 -3.8075 -0.1965 15 8 0.6147 -4.5975 0.0566 16 8 2.1666 -3.4965 -1.5246 17 6 3.1809 -4.4176 0.7648 18 6 3.6077 -5.7866 0.2315 19 6 4.7992 -6.3007 1.0419 20 6 6.1249 -6.4951 0.3032 21 6 5.3044 -7.7123 0.7372 22 1 -0.4851 0.8399 0.0004 23 1 -0.1242 -1.3368 1.4949 24 1 -0.2069 -3.1136 1.5608 25 1 1.0628 -2.1584 4.8663 26 1 4.0111 -3.7171 0.6750 27 1 2.8947 -4.5093 1.8126 28 1 2.7773 -6.4867 0.3216 29 1 3.8938 -5.6951 -0.8164 30 1 4.8449 -5.9623 2.0771 31 1 6.1482 -6.2572 -0.7602 32 1 7.0427 -6.2851 0.8524 33 1 5.6828 -8.3025 1.5718 34 1 4.7877 -8.2749 -0.0403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:26 Heat of formation + Delta-G solvation = -131.762285 kcal Electronic energy + Delta-G solvation = -20519.929656 eV Core-core repulsion = 17160.375435 eV Total energy + Delta-G solvation = -3359.554221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.45604 -37.67785 -36.15084 -35.91736 -35.05875 -34.84612 -32.07887 -31.45118 -27.65548 -24.51162 -23.98473 -22.40583 -21.05345 -20.46346 -18.55183 -17.46209 -17.31987 -16.66520 -15.87710 -15.66875 -15.33821 -15.10522 -14.82864 -14.53555 -14.10216 -13.85267 -13.29150 -12.58882 -12.35092 -11.83834 -11.68085 -11.58134 -11.52619 -11.37096 -11.27320 -11.13713 -10.95874 -10.90435 -10.77590 -10.56567 -10.50736 -10.29591 -9.98801 -9.91017 -9.73569 -9.13451 -7.87724 -6.33385 -4.01876 1.19199 2.97603 3.19119 3.27216 3.32898 3.51883 3.75606 4.00699 4.32390 4.58701 4.75973 4.82116 4.88791 5.01146 5.07073 5.16936 5.47455 5.56346 5.60706 5.67677 5.87223 5.99440 6.01114 6.06363 6.08323 6.19621 6.35861 6.67531 7.05695 7.16756 7.59203 8.28717 8.63758 8.89606 9.28846 10.71211 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.006635 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.761218 B = 4219.120541 C = 4553.265137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.037 3.963 3 Si 0.914 3.086 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.292 4.292 8 H 0.094 0.906 9 N -0.828 5.828 10 C 0.117 3.883 11 C 0.451 3.549 12 O -0.515 6.515 13 O -0.527 6.527 14 S 2.581 3.419 15 O -0.989 6.989 16 O -0.954 6.954 17 C -0.622 4.622 18 C -0.081 4.081 19 C -0.142 4.142 20 C -0.182 4.182 21 C -0.185 4.185 22 H 0.269 0.731 23 H 0.157 0.843 24 H 0.108 0.892 25 H 0.393 0.607 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -7.903 5.502 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.169 4.169 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.112 0.888 9 N -0.657 5.657 10 C -0.013 4.013 11 C 0.292 3.708 12 O -0.402 6.402 13 O -0.337 6.337 14 S 2.678 3.322 15 O -0.979 6.979 16 O -0.944 6.944 17 C -0.749 4.749 18 C -0.119 4.119 19 C -0.161 4.161 20 C -0.219 4.219 21 C -0.222 4.222 22 H 0.080 0.920 23 H 0.173 0.827 24 H 0.126 0.874 25 H 0.250 0.750 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.861 -8.268 4.372 10.541 hybrid contribution 1.350 1.046 1.306 2.150 sum 6.211 -7.222 5.678 11.089 Atomic orbital electron populations 1.69865 1.05957 1.27582 1.47217 1.25253 0.95152 0.99641 0.96832 0.86145 0.79782 0.81461 0.78622 1.20119 1.20794 1.19461 1.18987 0.97244 0.85213 1.40939 0.88827 1.52395 1.54300 1.19870 1.39152 1.21066 0.92277 1.09140 0.78826 1.25538 0.87913 0.71059 0.86294 1.90605 1.16034 1.45923 1.87640 1.84649 1.45818 1.86134 1.17144 1.06165 0.76037 0.74452 0.75529 1.93463 1.45836 1.71984 1.86621 1.93504 1.84447 1.82685 1.33803 1.30655 1.22556 1.06086 1.15631 1.20899 0.97817 0.93910 0.99322 1.22255 0.94686 0.98855 1.00274 1.23080 0.95123 1.02586 1.01099 1.23008 1.04536 0.91011 1.03634 0.92049 0.82665 0.87439 0.75016 0.84995 0.85779 0.90524 0.90622 0.87457 0.88544 0.88886 0.88900 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.77 11.26 55.49 0.63 -22.15 16 2 C 0.04 0.95 4.99 -17.43 -0.09 0.86 16 3 Si 0.91 20.26 29.62 -169.99 -5.03 15.23 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.29 -7.56 8.61 -15.06 -0.13 -7.69 16 8 H 0.09 2.38 7.94 -52.49 -0.42 1.97 16 9 N -0.83 -19.84 2.32 -61.09 -0.14 -19.98 16 10 C 0.12 2.57 5.87 -5.19 -0.03 2.54 16 11 C 0.45 8.95 8.36 36.01 0.30 9.25 16 12 O -0.51 -10.97 15.88 -18.75 -0.30 -11.27 16 13 O -0.53 -8.39 13.42 -39.25 -0.53 -8.92 16 14 S 2.58 56.54 5.39 -107.50 -0.58 55.96 16 15 O -0.99 -22.73 16.52 -57.54 -0.95 -23.68 16 16 O -0.95 -23.78 17.22 -57.54 -0.99 -24.77 16 17 C -0.62 -10.84 5.75 37.16 0.21 -10.63 16 18 C -0.08 -1.21 5.50 -26.73 -0.15 -1.36 16 19 C -0.14 -1.83 5.73 -90.62 -0.52 -2.35 16 20 C -0.18 -2.07 10.18 -26.69 -0.27 -2.34 16 21 C -0.18 -1.99 10.25 -26.69 -0.27 -2.26 16 22 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 23 H 0.16 3.69 5.31 -51.93 -0.28 3.41 16 24 H 0.11 2.20 6.80 -51.93 -0.35 1.85 16 25 H 0.39 4.31 9.10 45.56 0.41 4.73 16 26 H 0.13 2.29 8.14 -51.92 -0.42 1.87 16 27 H 0.12 2.09 7.36 -51.93 -0.38 1.71 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.09 7.87 -51.92 -0.41 0.68 16 30 H 0.11 1.37 8.08 -51.93 -0.42 0.95 16 31 H 0.10 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -31.91 307.69 -7.71 -39.62 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.51 Total: 9.30 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.94 Total: -13.98 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.48 Total: -42.13 kcal Atomic # 8 Polarization: -65.86 SS G_CDS: -2.77 Total: -68.63 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Atomic # 16 Polarization: 56.54 SS G_CDS: -0.58 Total: 55.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.91 -7.71 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.144 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds