Wall clock time and date at job start Mon Mar 30 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48501 * 109.47341 * 270.00277 * 3 2 1 5 5 H 1.48501 * 109.46876 * 30.00154 * 3 2 1 6 6 H 1.48491 * 109.47450 * 150.00326 * 3 2 1 7 7 C 1.38812 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00158 * 156.15822 * 7 2 1 9 9 N 1.36936 * 120.00075 * 336.15186 * 7 2 1 10 10 C 1.46498 * 119.99842 * 326.60349 * 9 7 2 11 11 C 1.50703 * 109.47195 * 276.17669 * 10 9 7 12 12 O 1.20822 * 119.99840 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99816 * 180.02562 * 11 10 9 14 14 S 1.65600 * 119.99850 * 146.59775 * 9 7 2 15 15 O 1.42110 * 104.27853 * 206.07253 * 14 9 7 16 16 O 1.42096 * 104.28247 * 333.93348 * 14 9 7 17 17 C 1.81403 * 104.44962 * 90.00557 * 14 9 7 18 18 C 1.53000 * 109.47343 * 179.97438 * 17 14 9 19 19 C 1.52996 * 109.47087 * 179.97438 * 18 17 14 20 20 C 1.53003 * 117.49860 * 243.75291 * 19 18 17 21 21 C 1.52995 * 117.49776 * 175.09081 * 19 18 17 22 22 H 0.96990 * 120.00751 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47528 * 36.18326 * 10 9 7 24 24 H 1.09007 * 109.46710 * 156.17780 * 10 9 7 25 25 H 0.96708 * 116.99549 * 180.02562 * 13 11 10 26 26 H 1.08999 * 109.46618 * 300.00221 * 17 14 9 27 27 H 1.08997 * 109.47192 * 59.99512 * 17 14 9 28 28 H 1.08996 * 109.47266 * 300.00440 * 18 17 14 29 29 H 1.09007 * 109.46616 * 60.00191 * 18 17 14 30 30 H 1.09004 * 115.55306 * 29.41839 * 19 18 17 31 31 H 1.08993 * 117.50153 * 359.97438 * 20 19 18 32 32 H 1.09001 * 117.50167 * 145.02473 * 20 19 18 33 33 H 1.09002 * 117.49700 * 214.97568 * 21 19 18 34 34 H 1.08997 * 117.50174 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0212 -1.2418 -0.3786 9 7 1.4133 -2.3376 0.4784 10 6 0.4604 -2.2520 1.5878 11 6 1.2107 -2.2385 2.8947 12 8 2.4176 -2.2941 2.8989 13 8 0.5381 -2.1646 4.0539 14 16 1.7686 -3.8075 -0.1965 15 8 0.6147 -4.5975 0.0566 16 8 2.1666 -3.4965 -1.5246 17 6 3.1809 -4.4176 0.7648 18 6 3.6077 -5.7866 0.2315 19 6 4.7992 -6.3007 1.0419 20 6 6.1249 -6.4951 0.3032 21 6 5.3044 -7.7123 0.7372 22 1 -0.4851 0.8399 0.0004 23 1 -0.1242 -1.3368 1.4949 24 1 -0.2069 -3.1136 1.5608 25 1 1.0628 -2.1584 4.8663 26 1 4.0111 -3.7171 0.6750 27 1 2.8947 -4.5093 1.8126 28 1 2.7773 -6.4867 0.3216 29 1 3.8938 -5.6951 -0.8164 30 1 4.8449 -5.9623 2.0771 31 1 6.1482 -6.2572 -0.7602 32 1 7.0427 -6.2851 0.8524 33 1 5.6828 -8.3025 1.5718 34 1 4.7877 -8.2749 -0.0403 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:25 Heat of formation + Delta-G solvation = -154.508032 kcal Electronic energy + Delta-G solvation = -20520.915986 eV Core-core repulsion = 17160.375435 eV Total energy + Delta-G solvation = -3360.540550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99989 -38.64144 -37.96551 -37.57369 -36.79703 -36.54997 -33.36178 -33.33590 -29.40788 -26.20793 -25.44161 -23.23211 -22.61302 -21.51733 -20.36241 -19.09486 -18.98836 -18.39907 -17.48251 -17.00736 -16.91429 -16.44945 -16.39844 -16.30828 -15.52862 -15.10945 -14.88805 -14.16493 -13.75077 -13.47092 -13.34391 -13.09849 -13.02905 -12.81567 -12.77394 -12.67479 -12.56818 -12.50968 -12.33236 -12.22532 -12.05630 -11.78939 -11.49490 -11.17927 -10.91722 -10.81334 -9.73337 -8.24559 -5.98146 -0.50058 1.38919 1.44961 1.47402 1.58505 1.87691 2.39938 2.53884 2.84192 2.91298 3.22746 3.36972 3.59628 3.79745 3.90944 4.09288 4.17896 4.32352 4.46343 4.50669 4.56612 4.78195 4.79534 4.90424 4.96205 5.03071 5.26161 5.28964 5.29798 5.71018 5.74434 6.38585 6.98244 7.20563 7.36449 8.79870 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.006635 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.761218 B = 4219.120541 C = 4553.265137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.311 4.311 8 H 0.089 0.911 9 N -0.844 5.844 10 C 0.109 3.891 11 C 0.462 3.538 12 O -0.530 6.530 13 O -0.514 6.514 14 S 2.578 3.422 15 O -1.007 7.007 16 O -0.994 6.994 17 C -0.589 4.589 18 C -0.087 4.087 19 C -0.161 4.161 20 C -0.184 4.184 21 C -0.170 4.170 22 H 0.272 0.728 23 H 0.139 0.861 24 H 0.115 0.885 25 H 0.420 0.580 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -8.657 6.882 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.207 4.207 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.443 4.443 8 H 0.107 0.893 9 N -0.673 5.673 10 C -0.020 4.020 11 C 0.303 3.697 12 O -0.420 6.420 13 O -0.327 6.327 14 S 2.680 3.320 15 O -0.997 6.997 16 O -0.984 6.984 17 C -0.721 4.721 18 C -0.126 4.126 19 C -0.180 4.180 20 C -0.221 4.221 21 C -0.207 4.207 22 H 0.082 0.918 23 H 0.156 0.844 24 H 0.133 0.867 25 H 0.281 0.719 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.149 -8.990 5.761 12.322 hybrid contribution 0.927 1.165 0.953 1.768 sum 7.076 -7.825 6.714 12.505 Atomic orbital electron populations 1.69950 1.06949 1.28302 1.48182 1.25974 0.95873 1.02207 0.96693 0.85311 0.78702 0.78192 0.78508 1.20046 1.20046 1.19275 1.19143 0.97370 0.86360 1.41446 0.89325 1.52432 1.54745 1.19998 1.40124 1.20970 0.92358 1.08668 0.80029 1.24795 0.87250 0.70902 0.86715 1.90596 1.16477 1.46788 1.88104 1.84548 1.45588 1.85268 1.17293 1.05949 0.76903 0.73877 0.75266 1.93429 1.47704 1.71797 1.86767 1.93450 1.85112 1.83237 1.36600 1.30315 1.19369 1.07526 1.14896 1.21039 0.99351 0.92386 0.99844 1.22182 0.94523 1.01134 1.00170 1.23199 0.94916 1.02854 1.01090 1.23131 1.03225 0.90206 1.04132 0.91846 0.84395 0.86680 0.71897 0.84604 0.84632 0.89722 0.90445 0.87233 0.88662 0.87613 0.87094 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.68 11.26 21.65 0.24 -47.43 16 2 C 0.00 -0.24 4.99 84.86 0.42 0.18 16 3 Si 0.97 41.58 29.62 68.60 2.03 43.61 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.31 -16.36 8.61 84.03 0.72 -15.64 16 8 H 0.09 4.61 7.94 -2.91 -0.02 4.58 16 9 N -0.84 -40.88 2.32 -347.18 -0.80 -41.69 16 10 C 0.11 4.83 5.87 85.63 0.50 5.33 16 11 C 0.46 17.77 8.36 71.24 0.60 18.36 16 12 O -0.53 -21.83 15.88 21.98 0.35 -21.48 16 13 O -0.51 -15.18 13.42 -51.38 -0.69 -15.87 16 14 S 2.58 113.87 5.39 -56.49 -0.30 113.56 16 15 O -1.01 -46.59 16.52 -127.65 -2.11 -48.69 16 16 O -0.99 -50.65 17.22 -127.65 -2.20 -52.85 16 17 C -0.59 -19.84 5.75 71.98 0.41 -19.42 16 18 C -0.09 -2.47 5.50 30.59 0.17 -2.30 16 19 C -0.16 -3.75 5.73 -10.80 -0.06 -3.81 16 20 C -0.18 -3.70 10.18 30.62 0.31 -3.39 16 21 C -0.17 -3.12 10.25 30.62 0.31 -2.81 16 22 H 0.27 13.60 8.31 -92.72 -0.77 12.83 16 23 H 0.14 6.67 5.31 -2.39 -0.01 6.66 16 24 H 0.12 4.76 6.80 -2.38 -0.02 4.74 16 25 H 0.42 7.86 9.10 -74.05 -0.67 7.19 16 26 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 27 H 0.14 4.32 7.36 -2.39 -0.02 4.30 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 2.15 7.87 -2.38 -0.02 2.13 16 30 H 0.11 2.51 8.08 -2.38 -0.02 2.49 16 31 H 0.09 1.93 8.03 -2.39 -0.02 1.91 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -68.17 307.69 0.36 -67.81 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.45 Total: 26.54 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.39 Total: -23.51 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -0.56 Total: -89.12 kcal Atomic # 8 Polarization: -134.24 SS G_CDS: -4.65 Total: -138.89 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 113.87 SS G_CDS: -0.30 Total: 113.56 kcal Total: -68.17 0.36 -67.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.700 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds