Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39612 * 120.06719 * 343.10630 * 3 2 1 5 5 C 1.37821 * 119.94943 * 179.97438 * 4 3 2 6 6 C 1.38983 * 120.08403 * 0.02562 * 5 4 3 7 7 N 1.39854 * 119.93097 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99938 * 325.23690 * 7 6 5 9 9 O 1.21287 * 119.99694 * 4.50439 * 8 7 6 10 10 C 1.50696 * 120.00000 * 184.50809 * 8 7 6 11 11 H 1.09003 * 109.46916 * 59.99936 * 10 8 7 12 12 C 1.53000 * 109.47176 * 300.00021 * 10 8 7 13 13 C 1.50698 * 109.47300 * 179.97438 * 10 8 7 14 14 H 1.07997 * 119.99695 * 359.97438 * 13 10 8 15 15 C 1.37874 * 120.00371 * 180.02562 * 13 10 8 16 16 N 1.31517 * 119.99684 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00242 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.46863 * 60.00057 * 17 15 13 19 19 H 1.48498 * 109.47260 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46965 * 300.00009 * 17 15 13 21 21 C 1.39087 * 120.13433 * 0.02562 * 6 5 4 22 22 Cl 1.73599 * 119.97307 * 180.02562 * 21 6 5 23 23 C 1.37933 * 120.05051 * 359.67731 * 21 6 5 24 24 H 4.51993 * 14.04384 * 359.97438 * 4 2 1 25 25 H 1.07997 * 120.02772 * 0.02562 * 4 3 2 26 26 H 1.07996 * 119.95695 * 180.02562 * 5 4 3 27 27 H 0.96994 * 120.00265 * 145.24228 * 7 6 5 28 28 H 1.08997 * 109.46568 * 300.00195 * 12 10 8 29 29 H 1.08997 * 109.46999 * 59.99855 * 12 10 8 30 30 H 1.08994 * 109.47117 * 179.97438 * 12 10 8 31 31 H 0.97005 * 119.99912 * 180.02562 * 16 15 13 32 32 H 1.08000 * 120.04183 * 180.33051 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3060 -1.1552 0.3511 5 6 4.6842 -1.1520 0.3498 6 6 5.3779 0.0004 -0.0001 7 7 6.7764 0.0002 0.0001 8 6 7.4501 -0.7240 0.9157 9 8 6.8461 -1.4392 1.6870 10 6 8.9535 -0.6450 0.9812 11 1 9.2548 0.3826 1.1847 12 6 9.5466 -1.0953 -0.3553 13 6 9.4562 -1.5428 2.0823 14 1 8.7569 -2.1131 2.6756 15 6 10.8088 -1.6352 2.3330 16 7 11.6603 -0.9395 1.6115 17 14 11.4319 -2.7474 3.6983 18 1 11.0217 -4.1477 3.4220 19 1 12.9135 -2.6697 3.7628 20 1 10.8558 -2.3096 4.9951 21 6 4.6840 1.1541 -0.3495 22 17 5.5547 2.5910 -0.7864 23 6 3.3047 1.1553 -0.3559 24 1 -1.0500 -0.0008 0.0008 25 1 2.7679 -2.0513 0.6228 26 1 5.2258 -2.0461 0.6210 27 1 7.2616 0.5213 -0.6585 28 1 9.2452 -2.1228 -0.5587 29 1 9.1830 -0.4456 -1.1514 30 1 10.6340 -1.0377 -0.3081 31 1 12.6120 -1.0048 1.7875 32 1 2.7661 2.0497 -0.6324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627146464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = 30.370476 kcal Electronic energy + Delta-G solvation = -18140.108792 eV Core-core repulsion = 15092.850388 eV Total energy + Delta-G solvation = -3047.258403 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 277.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25691 -38.41426 -36.53672 -34.83351 -33.91069 -32.96707 -30.89987 -30.68288 -28.83816 -25.24064 -24.03908 -22.91494 -22.12980 -19.58324 -19.11367 -17.74347 -16.37338 -16.11682 -15.90434 -15.39954 -14.68544 -14.43582 -14.16365 -13.72378 -13.63100 -13.13936 -12.76844 -12.47352 -12.11922 -11.90741 -11.59680 -11.10080 -11.07537 -10.98888 -10.83018 -10.77021 -10.62750 -10.37489 -10.05120 -9.79215 -9.09771 -8.96681 -8.74062 -8.42722 -7.84094 -6.10701 -4.15110 0.80072 1.18491 2.04161 2.65058 2.79709 3.32380 3.35392 3.37886 3.43639 3.52577 3.90359 4.14761 4.40859 4.76862 5.00512 5.22226 5.23830 5.39673 5.55792 5.73547 5.97020 6.11066 6.22270 6.36706 6.50077 6.54664 6.70408 6.78898 7.00398 7.34486 7.39333 7.63234 7.79216 7.97692 8.21852 8.86069 8.93793 9.50820 10.96844 Molecular weight = 277.06amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.004377 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.735961 B = 6396.260938 C = 7187.161322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 C -0.018 4.018 4 C -0.067 4.067 5 C -0.116 4.116 6 C 0.190 3.810 7 N -0.684 5.684 8 C 0.522 3.478 9 O -0.519 6.519 10 C 0.033 3.967 11 H 0.058 0.942 12 C -0.136 4.136 13 C -0.506 4.506 14 H 0.075 0.925 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.076 4.076 22 Cl -0.063 7.063 23 C -0.066 4.066 24 H 0.223 0.777 25 H 0.133 0.867 26 H 0.157 0.843 27 H 0.412 0.588 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 4.351 -6.888 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.019 4.019 4 C -0.086 4.086 5 C -0.137 4.137 6 C 0.092 3.908 7 N -0.329 5.329 8 C 0.313 3.687 9 O -0.392 6.392 10 C 0.012 3.988 11 H 0.076 0.924 12 C -0.194 4.194 13 C -0.545 4.545 14 H 0.093 0.907 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.106 4.106 22 Cl -0.034 7.034 23 C -0.085 4.085 24 H 0.240 0.760 25 H 0.151 0.849 26 H 0.175 0.825 27 H 0.249 0.751 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.344 3.979 -6.336 17.070 hybrid contribution 0.499 -0.028 0.306 0.586 sum -14.845 3.951 -6.029 16.502 Atomic orbital electron populations 1.24805 0.95671 0.99583 1.00594 1.19902 0.91753 1.01085 1.00734 1.15692 0.86650 0.94302 1.05285 1.21198 0.93536 0.97205 0.96690 1.21348 0.93501 0.98068 1.00780 1.17841 0.84811 0.91626 0.96553 1.44256 1.03031 1.50650 1.34991 1.22419 0.92580 0.76615 0.77069 1.90531 1.70364 1.37824 1.40516 1.18922 0.82834 1.00148 0.96908 0.92396 1.21788 1.05516 0.98117 0.93941 1.21058 0.92167 1.25801 1.15438 0.90676 1.24942 0.96662 0.95866 0.96602 1.69855 1.02548 1.41206 1.39772 0.86472 0.77229 0.81038 0.82220 1.20125 1.21320 1.20119 1.20585 0.92236 0.87628 1.10134 1.98363 1.76490 1.36942 1.91597 1.20777 0.91063 0.98069 0.98591 0.76014 0.84864 0.82529 0.75118 0.94687 0.96817 0.88450 0.92740 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.13 -1.61 13.23 -38.84 -0.51 -2.13 16 3 C -0.02 -0.24 5.73 -106.96 -0.61 -0.85 16 4 C -0.07 -0.91 9.74 -39.22 -0.38 -1.30 16 5 C -0.12 -1.86 8.68 -39.46 -0.34 -2.20 16 6 C 0.19 3.08 6.31 -83.61 -0.53 2.56 16 7 N -0.68 -11.96 4.96 -9.80 -0.05 -12.01 16 8 C 0.52 11.31 6.99 -10.99 -0.08 11.23 16 9 O -0.52 -12.48 12.86 5.55 0.07 -12.41 16 10 C 0.03 0.78 2.64 -92.93 -0.25 0.54 16 11 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 12 C -0.14 -2.97 8.87 37.16 0.33 -2.64 16 13 C -0.51 -13.84 8.37 -34.44 -0.29 -14.12 16 14 H 0.08 2.15 6.75 -52.49 -0.35 1.79 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 17 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.08 -1.08 6.33 -39.38 -0.25 -1.33 16 22 Cl -0.06 -0.82 27.93 -51.86 -1.45 -2.27 16 23 C -0.07 -0.84 9.52 -39.19 -0.37 -1.22 16 24 H 0.22 1.17 7.80 -54.09 -0.42 0.75 16 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.16 2.75 6.19 -52.49 -0.32 2.43 16 27 H 0.41 6.39 7.35 -40.82 -0.30 6.09 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.24 7.47 -51.93 -0.39 -0.15 16 30 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -29.26 301.25 -7.02 -36.28 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -2.93 Total: 4.56 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -2.81 Total: -11.15 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.58 Total: -35.84 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.45 Total: -2.27 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.26 -7.02 -36.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627146464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.650 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds