Wall clock time and date at job start Mon Mar 30 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48497 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47013 * 300.00275 * 3 2 1 6 6 H 1.48494 * 109.47215 * 60.00328 * 3 2 1 7 7 C 1.37871 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00685 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47058 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46961 * 180.02562 * 10 9 7 12 12 O 1.21303 * 119.99994 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00150 * 179.97438 * 11 10 9 14 14 C 1.40756 * 120.00264 * 179.97438 * 13 11 10 15 15 C 1.35756 * 126.08164 * 359.97438 * 14 13 11 16 16 N 1.35813 * 107.56628 * 180.02562 * 15 14 13 17 17 H 0.97001 * 126.05189 * 179.97438 * 16 15 14 18 18 N 1.40071 * 107.89153 * 0.26922 * 16 15 14 19 19 C 1.30829 * 108.36851 * 359.54880 * 18 16 15 20 20 C 1.50701 * 125.83562 * 180.18220 * 19 18 16 21 21 F 1.39901 * 109.46967 * 270.31157 * 20 19 18 22 22 F 1.39900 * 109.46740 * 30.30470 * 20 19 18 23 23 F 1.39897 * 109.47732 * 150.30658 * 20 19 18 24 24 H 0.97004 * 119.99794 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47124 * 59.99952 * 9 7 2 26 26 H 1.08994 * 109.46883 * 300.00069 * 9 7 2 27 27 H 1.08999 * 109.47259 * 59.99953 * 10 9 7 28 28 H 1.09007 * 109.47163 * 299.99945 * 10 9 7 29 29 H 0.96999 * 119.99485 * 359.97438 * 13 11 10 30 30 H 1.08006 * 126.21433 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2787 -4.9671 -0.0011 13 7 2.1656 -6.1344 -0.0018 14 6 1.4618 -7.3534 -0.0018 15 6 0.1119 -7.4972 -0.0008 16 7 -0.1585 -8.8281 -0.0007 17 1 -1.0407 -9.2314 0.0003 18 7 1.0621 -9.5152 0.0046 19 6 2.0304 -8.6355 -0.0023 20 6 3.5050 -8.9466 -0.0038 21 9 3.9626 -9.0427 1.3147 22 9 3.7247 -10.1606 -0.6633 23 9 4.1964 -7.9253 -0.6641 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8906 29 1 3.1356 -6.1343 -0.0022 30 1 -0.6150 -6.6983 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634590435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:20 Heat of formation + Delta-G solvation = -141.365606 kcal Electronic energy + Delta-G solvation = -21093.053580 eV Core-core repulsion = 17088.074987 eV Total energy + Delta-G solvation = -4004.978593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.32088 -48.86549 -48.78589 -42.78478 -40.61713 -35.99949 -35.52672 -33.40347 -33.06972 -30.39354 -27.89978 -27.52148 -24.50986 -23.12211 -22.13449 -21.02532 -20.12729 -19.68614 -19.36528 -18.63905 -18.32875 -17.36905 -16.82769 -16.78503 -16.40446 -15.97966 -15.66774 -15.54408 -15.24079 -15.07209 -14.93578 -14.89009 -14.72273 -14.29354 -14.20338 -13.50472 -13.19016 -12.84532 -12.57897 -12.38699 -12.17757 -11.89605 -11.60633 -11.24256 -11.17820 -10.84695 -10.53248 -9.13704 -8.15214 -6.27546 0.25503 0.85190 0.96754 1.45945 1.46013 1.58880 1.61642 1.83456 2.12988 2.45981 2.54980 2.74678 3.19078 3.19881 3.50039 3.91462 4.12510 4.27645 4.53891 4.57873 4.59317 5.09087 5.37990 5.55755 5.68578 5.83765 5.89501 6.14625 6.21634 6.38166 6.90435 7.12063 7.42524 8.97282 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.031391 B = 0.003797 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.775041 B = 7372.994081 C = 8079.671639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.117 4.117 11 C 0.518 3.482 12 O -0.557 6.557 13 N -0.639 5.639 14 C 0.022 3.978 15 C 0.053 3.947 16 N -0.426 5.426 17 H 0.469 0.531 18 N -0.234 5.234 19 C -0.042 4.042 20 C 0.563 3.437 21 F -0.165 7.165 22 F -0.165 7.165 23 F -0.161 7.161 24 H 0.262 0.738 25 H -0.011 1.011 26 H -0.011 1.011 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.424 0.576 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -19.504 -0.021 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.093 0.907 9 C 0.004 3.996 10 C -0.157 4.157 11 C 0.308 3.692 12 O -0.434 6.434 13 N -0.287 5.287 14 C -0.083 4.083 15 C -0.097 4.097 16 N -0.143 5.143 17 H 0.320 0.680 18 N -0.062 5.062 19 C -0.210 4.210 20 C 0.506 3.494 21 F -0.147 7.147 22 F -0.146 7.146 23 F -0.142 7.142 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.264 0.736 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.960 -20.560 -0.017 21.150 hybrid contribution 0.274 1.511 -0.002 1.535 sum 5.234 -19.050 -0.019 19.756 Atomic orbital electron populations 1.70159 1.08111 1.27619 1.51693 1.26029 0.95657 1.03607 0.94794 0.85353 0.79394 0.78575 0.77419 1.17769 1.20831 1.20819 1.21749 0.94054 0.91669 1.50421 0.90681 1.18715 0.93669 0.91899 0.95333 1.21662 0.99527 0.89012 1.05471 1.21499 0.88065 0.85741 0.73903 1.90508 1.15840 1.87272 1.49774 1.43217 1.10860 1.01853 1.72730 1.17585 0.91681 0.85386 1.13682 1.23321 0.96578 0.87421 1.02335 1.46270 1.07822 1.03855 1.56359 0.67996 1.77118 0.89674 1.19269 1.20096 1.21826 0.94182 0.91938 1.13012 1.16694 0.83807 0.74579 0.74275 1.93267 1.89973 1.95851 1.35572 1.93240 1.95407 1.45049 1.80925 1.93195 1.80692 1.59376 1.80956 0.92941 0.99221 0.99224 0.87234 0.87243 0.73627 0.77293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 4 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 8 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.04 2.15 4.26 29.85 0.13 2.28 16 10 C -0.12 -4.27 5.64 29.85 0.17 -4.10 16 11 C 0.52 17.92 7.80 87.66 0.68 18.61 16 12 O -0.56 -22.93 13.14 -3.10 -0.04 -22.97 16 13 N -0.64 -17.15 5.38 -304.04 -1.64 -18.79 16 14 C 0.02 0.58 6.78 37.62 0.26 0.83 16 15 C 0.05 1.29 10.87 83.50 0.91 2.20 16 16 N -0.43 -8.04 7.40 -56.81 -0.42 -8.46 16 17 H 0.47 4.98 8.96 -213.34 -1.91 3.06 16 18 N -0.23 -5.40 12.62 -47.14 -0.59 -5.99 16 19 C -0.04 -1.01 6.57 43.20 0.28 -0.72 16 20 C 0.56 12.04 3.54 71.24 0.25 12.29 16 21 F -0.17 -3.53 17.30 44.97 0.78 -2.75 16 22 F -0.17 -3.57 17.25 44.97 0.78 -2.79 16 23 F -0.16 -3.20 15.25 44.97 0.69 -2.51 16 24 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 25 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 26 H -0.01 -0.62 8.10 -2.39 -0.02 -0.64 16 27 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 28 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 29 H 0.42 9.15 6.95 -92.71 -0.64 8.51 16 30 H 0.21 5.64 5.85 -2.91 -0.02 5.62 16 Total: -1.00 -69.82 282.81 3.91 -65.91 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -1.32 Total: 7.67 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 3.37 Total: 2.51 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -2.37 Total: -90.16 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.24 Total: -8.05 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.82 3.91 -65.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634590435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.456 kcal (2) G-P(sol) polarization free energy of solvation -69.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds