Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30475 * 119.99891 * 2 1 4 4 N 1.40101 * 120.00330 * 359.97438 * 3 2 1 5 5 C 1.34772 * 120.00308 * 180.02562 * 4 3 2 6 6 O 1.21913 * 120.00336 * 359.97438 * 5 4 3 7 7 C 1.41120 * 120.00092 * 180.02562 * 5 4 3 8 8 H 1.08000 * 119.99740 * 0.02562 * 7 5 4 9 9 C 1.40246 * 120.00059 * 179.97438 * 7 5 4 10 10 N 1.30574 * 119.99938 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99903 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46993 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47249 * 120.00071 * 11 9 7 14 14 H 1.48503 * 109.47049 * 240.00172 * 11 9 7 15 15 C 1.47033 * 120.00426 * 179.97438 * 2 1 3 16 16 C 1.40018 * 120.18588 * 180.02562 * 15 2 1 17 17 C 1.37823 * 119.81391 * 180.02562 * 16 15 2 18 18 C 1.38479 * 120.18209 * 0.27804 * 17 16 15 19 19 N 1.48556 * 119.81141 * 179.70008 * 18 17 16 20 20 O 1.21793 * 120.00286 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99474 * 180.02562 * 19 18 17 22 22 C 1.38479 * 120.36985 * 359.44599 * 18 17 16 23 23 C 1.37819 * 120.18450 * 0.54772 * 22 18 17 24 24 H 1.08997 * 109.47038 * 270.00069 * 1 2 3 25 25 H 1.09002 * 109.46842 * 30.00616 * 1 2 3 26 26 H 1.09005 * 109.46861 * 149.99943 * 1 2 3 27 27 H 0.97008 * 119.99374 * 0.02562 * 4 3 2 28 28 H 0.97001 * 119.99800 * 179.97438 * 10 9 7 29 29 H 1.08000 * 120.09419 * 359.97438 * 16 15 2 30 30 H 1.08002 * 119.90563 * 179.97438 * 17 16 15 31 31 H 1.08005 * 119.90839 * 180.28348 * 22 18 17 32 32 H 1.08001 * 120.09269 * 179.70743 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1300 0.0000 4 7 1.4589 2.3433 -0.0005 5 6 2.1327 3.5105 -0.0011 6 8 3.3518 3.5106 -0.0006 7 6 1.4271 4.7326 -0.0011 8 1 0.3471 4.7326 -0.0002 9 6 2.1283 5.9472 -0.0011 10 7 3.4341 5.9472 -0.0006 11 14 1.1943 7.5649 -0.0003 12 1 -0.2657 7.2935 -0.0005 13 1 1.5535 8.3434 1.2122 14 1 1.5525 8.3439 -1.2129 15 6 2.2422 -1.2733 0.0006 16 6 3.6424 -1.2777 0.0011 17 6 4.3239 -2.4757 0.0011 18 6 3.6276 -3.6727 -0.0052 19 7 4.3705 -4.9592 -0.0119 20 8 5.5884 -4.9592 -0.0123 21 8 3.7614 -6.0140 -0.0180 22 6 2.2428 -3.6772 -0.0001 23 6 1.5460 -2.4882 0.0000 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 0.4888 2.3432 -0.0005 28 1 3.9190 6.7872 -0.0009 29 1 4.1869 -0.3450 0.0007 30 1 5.4039 -2.4809 0.0011 31 1 1.7073 -4.6152 -0.0005 32 1 0.4660 -2.4934 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003897516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = 0.766639 kcal Electronic energy + Delta-G solvation = -19821.677813 eV Core-core repulsion = 16364.719277 eV Total energy + Delta-G solvation = -3456.958536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.22164 -40.68186 -39.67518 -37.67910 -37.62640 -34.87649 -34.10723 -32.58436 -31.78350 -29.81494 -28.42861 -27.47564 -24.16764 -23.90235 -22.48329 -20.69683 -20.35563 -19.78379 -19.66293 -18.60343 -17.84739 -17.53871 -16.58709 -16.06229 -15.77932 -15.74986 -15.62953 -14.91733 -14.74326 -14.63737 -13.95306 -13.82942 -13.34772 -12.98123 -12.92147 -12.77843 -12.71395 -12.47950 -12.41226 -12.30137 -12.28277 -11.99649 -11.08477 -11.07309 -10.81042 -10.42364 -10.05421 -9.21135 -8.46923 -7.13336 -1.38239 -0.00918 0.02058 0.34052 1.17771 1.38637 1.41027 1.58086 1.94265 2.28174 2.32597 2.47624 3.28770 3.39558 3.49341 3.58539 3.83580 3.88310 4.13172 4.26006 4.44602 4.57213 4.67714 4.71087 4.81566 5.01663 5.11038 5.14625 5.16720 5.33018 5.45351 5.74160 5.96347 6.49614 6.64579 6.80055 7.34609 8.35598 8.52199 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.042919 B = 0.003105 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.228959 B = 9016.025646 C = 9653.095548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 N -0.244 5.244 4 N -0.583 5.583 5 C 0.541 3.459 6 O -0.613 6.613 7 C -0.558 4.558 8 H 0.098 0.902 9 C 0.030 3.970 10 N -0.800 5.800 11 Si 1.009 2.991 12 H -0.241 1.241 13 H -0.267 1.267 14 H -0.267 1.267 15 C 0.028 3.972 16 C -0.107 4.107 17 C -0.055 4.055 18 C -0.060 4.060 19 N 0.031 4.969 20 O -0.204 6.204 21 O -0.154 6.154 22 C -0.041 4.041 23 C -0.082 4.082 24 H 0.098 0.902 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.388 0.612 28 H 0.282 0.718 29 H 0.131 0.869 30 H 0.155 0.845 31 H 0.185 0.815 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 -14.429 0.043 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 N -0.054 5.054 4 N -0.330 5.330 5 C 0.351 3.649 6 O -0.498 6.498 7 C -0.594 4.594 8 H 0.116 0.884 9 C -0.189 4.189 10 N -0.428 5.428 11 Si 0.827 3.173 12 H -0.163 1.163 13 H -0.191 1.191 14 H -0.192 1.192 15 C 0.026 3.974 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.144 4.144 19 N 0.546 4.454 20 O -0.410 6.410 21 O -0.374 6.374 22 C -0.060 4.060 23 C -0.103 4.103 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.139 0.861 27 H 0.229 0.771 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.172 0.828 31 H 0.202 0.798 32 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.062 -13.071 0.048 15.906 hybrid contribution -0.472 0.313 -0.007 0.567 sum -9.535 -12.758 0.041 15.928 Atomic orbital electron populations 1.21333 0.88593 1.05438 1.05019 1.23513 0.96031 0.90202 1.02837 1.74904 1.28724 0.93288 1.08472 1.47386 1.08237 1.01338 1.76080 1.17363 0.87403 0.82238 0.77902 1.90656 1.15897 1.86634 1.56608 1.20430 0.95820 0.89749 1.53414 0.88407 1.27145 0.95526 1.05379 0.90829 1.70158 1.09990 1.29833 1.32811 0.84812 0.79459 0.74327 0.78749 1.16339 1.19141 1.19153 1.18980 0.92414 0.91814 0.94223 1.21444 0.94401 0.97634 0.99314 1.20950 1.02345 0.89412 0.94672 1.21535 0.93478 0.82146 1.17253 1.44052 1.01176 1.03416 0.96757 1.94551 0.96322 1.94521 1.55656 1.94476 1.69814 1.20591 1.52567 1.21283 0.89596 1.01921 0.93193 1.21690 1.02792 0.87549 0.98222 0.88353 0.91689 0.86143 0.77117 0.90782 0.85062 0.82774 0.79758 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.04 71.24 0.64 -1.91 16 2 C 0.06 1.75 7.11 45.07 0.32 2.07 16 3 N -0.24 -10.08 10.19 -42.82 -0.44 -10.52 16 4 N -0.58 -26.23 6.11 -180.27 -1.10 -27.33 16 5 C 0.54 31.02 7.67 84.95 0.65 31.67 16 6 O -0.61 -41.48 15.21 -5.03 -0.08 -41.55 16 7 C -0.56 -29.83 9.28 23.47 0.22 -29.61 16 8 H 0.10 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.03 1.58 5.50 85.37 0.47 2.05 16 10 N -0.80 -46.97 11.72 21.87 0.26 -46.71 16 11 Si 1.01 37.70 29.56 68.60 2.03 39.73 16 12 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 13 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 14 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 15 C 0.03 0.66 5.88 -20.11 -0.12 0.54 16 16 C -0.11 -2.91 9.59 22.60 0.22 -2.69 16 17 C -0.05 -1.32 9.54 22.23 0.21 -1.11 16 18 C -0.06 -1.34 6.88 36.39 0.25 -1.09 16 19 N 0.03 0.81 4.47 -45.78 -0.20 0.60 16 20 O -0.20 -6.01 18.45 18.90 0.35 -5.66 16 21 O -0.15 -3.91 18.45 18.89 0.35 -3.56 16 22 C -0.04 -0.63 9.54 22.23 0.21 -0.42 16 23 C -0.08 -1.15 9.37 22.60 0.21 -0.94 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.29 6.36 -2.39 -0.02 1.28 16 26 H 0.12 1.10 6.47 -2.38 -0.02 1.08 16 27 H 0.39 14.11 6.41 -213.31 -1.37 12.74 16 28 H 0.28 14.76 8.29 -92.71 -0.77 14.00 16 29 H 0.13 4.36 7.55 -2.91 -0.02 4.34 16 30 H 0.15 3.57 7.60 -2.91 -0.02 3.55 16 31 H 0.19 1.76 7.60 -2.91 -0.02 1.74 16 32 H 0.20 1.01 6.36 -2.91 -0.02 0.99 16 Total: -1.00 -80.37 297.50 4.28 -76.09 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.17 Total: 20.37 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 3.29 Total: -1.44 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.49 Total: -83.96 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: 0.62 Total: -50.78 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -80.37 4.28 -76.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003897516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.854 kcal (2) G-P(sol) polarization free energy of solvation -80.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds