Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35506 * 117.00266 * 2 1 4 4 C 1.39375 * 121.13524 * 359.72264 * 3 2 1 5 5 C 1.38022 * 119.36646 * 179.64446 * 4 3 2 6 6 N 1.32101 * 121.69826 * 0.69360 * 5 4 3 7 7 C 1.32176 * 121.68919 * 359.62676 * 6 5 4 8 8 C 1.40091 * 121.13761 * 180.02562 * 3 2 1 9 9 C 1.46819 * 121.98600 * 0.02562 * 8 3 2 10 10 O 1.21645 * 120.88662 * 359.96694 * 9 8 3 11 11 N 1.35130 * 118.22176 * 179.97438 * 9 8 3 12 12 C 1.37336 * 119.45097 * 179.97438 * 11 9 8 13 13 H 1.08005 * 120.00143 * 221.41836 * 12 11 9 14 14 C 1.38968 * 120.00138 * 41.40694 * 12 11 9 15 15 N 1.31338 * 120.00235 * 19.83378 * 14 12 11 16 16 Si 1.86807 * 119.99958 * 199.82831 * 14 12 11 17 17 H 1.48501 * 109.46941 * 90.00322 * 16 14 12 18 18 H 1.48506 * 109.47030 * 209.99947 * 16 14 12 19 19 H 1.48499 * 109.47222 * 330.00242 * 16 14 12 20 20 C 1.34228 * 121.10206 * 0.02562 * 11 9 8 21 21 O 1.21556 * 118.55451 * 179.97438 * 20 11 9 22 22 N 1.34366 * 122.89746 * 359.97438 * 20 11 9 23 23 C 1.46499 * 119.63179 * 180.02562 * 22 20 11 24 24 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47283 * 59.99714 * 1 2 3 26 26 H 1.09000 * 109.46850 * 300.00166 * 1 2 3 27 27 H 1.07996 * 120.31540 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.15133 * 180.29754 * 5 4 3 29 29 H 0.97003 * 119.99937 * 180.02562 * 15 14 12 30 30 H 1.09004 * 109.47124 * 359.97438 * 23 22 20 31 31 H 1.08995 * 109.47572 * 120.00068 * 23 22 20 32 32 H 1.09003 * 109.46730 * 240.00267 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3085 2.3911 -0.0058 5 6 1.9728 3.6009 0.0019 6 7 3.2921 3.6684 0.0010 7 6 4.0430 2.5807 0.0001 8 6 3.4415 1.3084 -0.0005 9 6 4.3070 0.1224 -0.0017 10 8 3.8318 -0.9974 -0.0016 11 7 5.6455 0.3081 -0.0027 12 6 6.4787 -0.7836 -0.0032 13 1 7.3643 -0.7874 0.6149 14 6 6.1821 -1.8837 -0.7989 15 7 5.3633 -1.7556 -1.8178 16 14 6.9482 -3.5446 -0.4195 17 1 6.0682 -4.2943 0.5126 18 1 7.1068 -4.3159 -1.6786 19 1 8.2786 -3.3442 0.2092 20 6 6.1743 1.5418 -0.0021 21 8 7.3846 1.6552 -0.0026 22 7 5.4249 2.6571 -0.0010 23 6 6.0779 3.9685 -0.0010 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 0.2290 2.3619 -0.0108 28 1 1.3992 4.5161 0.0023 29 1 5.1560 -2.5236 -2.3729 30 1 7.1598 3.8357 -0.0015 31 1 5.7792 4.5232 -0.8905 32 1 5.7805 4.5223 0.8895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009571623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -51.668313 kcal Electronic energy + Delta-G solvation = -22168.491405 eV Core-core repulsion = 18709.259119 eV Total energy + Delta-G solvation = -3459.232286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.05790 -41.15861 -39.78714 -39.20340 -36.79492 -36.00940 -34.27340 -32.69497 -31.52739 -28.97042 -28.06176 -27.26991 -25.42965 -24.62557 -23.03792 -21.23989 -20.45836 -19.37820 -18.40001 -18.17654 -17.85636 -17.06682 -16.72574 -16.52791 -16.48981 -15.72012 -15.56750 -15.35687 -15.29620 -14.80977 -14.67275 -13.83466 -13.80236 -13.67196 -13.12863 -13.01090 -12.90210 -12.50999 -12.37737 -12.18539 -11.66807 -11.48905 -11.26081 -11.13720 -10.53146 -10.02734 -10.01214 -9.35508 -8.55468 -6.43990 -0.29243 0.09946 1.16788 1.32284 1.35163 1.43863 1.51493 2.04400 2.21048 2.30265 2.62063 2.82852 3.15259 3.28823 3.58116 3.72372 3.86144 4.28934 4.32941 4.36142 4.41039 4.47730 4.56256 4.74151 4.81919 4.91842 5.00398 5.24398 5.38261 5.53189 5.85650 6.24128 6.27009 6.65058 6.80893 6.93503 7.23948 7.68028 8.56534 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.008967 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.524264 B = 3121.712962 C = 4583.135386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.243 3.757 4 C -0.288 4.288 5 C 0.203 3.797 6 N -0.538 5.538 7 C 0.416 3.584 8 C -0.306 4.306 9 C 0.526 3.474 10 O -0.504 6.504 11 N -0.408 5.408 12 C -0.387 4.387 13 H 0.092 0.908 14 C 0.028 3.972 15 N -0.862 5.862 16 Si 1.000 3.000 17 H -0.272 1.272 18 H -0.267 1.267 19 H -0.254 1.254 20 C 0.662 3.338 21 O -0.585 6.585 22 N -0.533 5.533 23 C 0.093 3.907 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.193 0.807 28 H 0.226 0.774 29 H 0.275 0.725 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 10.951 2.963 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.186 3.814 4 C -0.310 4.310 5 C 0.046 3.954 6 N -0.258 5.258 7 C 0.182 3.818 8 C -0.316 4.316 9 C 0.319 3.681 10 O -0.378 6.378 11 N -0.138 5.138 12 C -0.512 4.512 13 H 0.110 0.890 14 C -0.181 4.181 15 N -0.494 5.494 16 Si 0.821 3.179 17 H -0.198 1.198 18 H -0.192 1.192 19 H -0.178 1.178 20 C 0.367 3.633 21 O -0.464 6.464 22 N -0.258 5.258 23 C -0.047 4.047 24 H 0.128 0.872 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.210 0.790 28 H 0.243 0.757 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.364 10.844 2.789 16.681 hybrid contribution 0.043 -1.735 -0.140 1.741 sum -12.321 9.110 2.649 15.550 Atomic orbital electron populations 1.23609 0.75060 1.05930 1.03758 1.86326 1.24580 1.26003 1.85321 1.19121 0.89136 0.86809 0.86312 1.22481 1.03458 0.90375 1.14679 1.23416 0.87344 0.99214 0.85417 1.67324 1.08303 1.27469 1.22738 1.18207 0.84497 0.88543 0.90515 1.20025 0.94134 0.93310 1.24119 1.18392 0.81757 0.89309 0.78658 1.90615 1.74149 1.26244 1.46755 1.42048 1.07389 1.04912 1.59486 1.19509 1.09695 0.93102 1.28910 0.88983 1.26377 0.95784 1.03927 0.91964 1.69963 1.33273 1.32709 1.13433 0.84884 0.78718 0.75906 0.78402 1.19778 1.19178 1.17808 1.16444 0.85749 0.81066 0.80031 1.90751 1.12737 1.85418 1.57453 1.44731 1.03335 1.08593 1.69131 1.22000 0.98913 0.79006 1.04818 0.87223 0.89995 0.89510 0.78982 0.75746 0.91590 0.89560 0.89090 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.84 113.37 1.12 1.31 16 2 O -0.31 -11.52 8.94 -68.92 -0.62 -12.14 16 3 C 0.24 8.68 6.74 22.99 0.16 8.83 16 4 C -0.29 -6.35 9.12 22.49 0.21 -6.14 16 5 C 0.20 4.12 11.13 84.60 0.94 5.06 16 6 N -0.54 -15.95 9.66 -192.50 -1.86 -17.81 16 7 C 0.42 16.55 7.38 133.73 0.99 17.54 16 8 C -0.31 -13.88 5.89 -19.97 -0.12 -13.99 16 9 C 0.53 30.18 6.91 86.43 0.60 30.77 16 10 O -0.50 -31.42 13.14 14.98 0.20 -31.23 16 11 N -0.41 -24.33 2.63 -602.61 -1.58 -25.92 16 12 C -0.39 -24.16 8.54 84.01 0.72 -23.44 16 13 H 0.09 5.73 7.77 -2.91 -0.02 5.71 16 14 C 0.03 1.68 4.33 84.94 0.37 2.05 16 15 N -0.86 -53.80 11.57 21.66 0.25 -53.55 16 16 Si 1.00 46.84 29.60 68.60 2.03 48.87 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 20 C 0.66 35.78 8.05 179.35 1.44 37.22 16 21 O -0.59 -33.49 15.19 -3.89 -0.06 -33.55 16 22 N -0.53 -22.92 3.05 -678.37 -2.07 -24.99 16 23 C 0.09 2.94 10.07 127.77 1.29 4.22 16 24 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.23 7.71 -2.39 -0.02 1.21 16 26 H 0.09 1.21 7.73 -2.39 -0.02 1.19 16 27 H 0.19 2.26 6.49 -2.91 -0.02 2.24 16 28 H 0.23 1.83 8.06 -2.91 -0.02 1.80 16 29 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.09 2.90 6.78 -2.39 -0.02 2.89 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -88.30 280.37 5.17 -83.13 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.17 Total: 3.72 kcal Atomic # 6 Polarization: 55.75 SS G_CDS: 7.70 Total: 63.45 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -5.26 Total: -122.26 kcal Atomic # 8 Polarization: -76.44 SS G_CDS: -0.48 Total: -76.92 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -88.30 5.17 -83.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009571623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.464 kcal (2) G-P(sol) polarization free energy of solvation -88.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds