Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99515 * 2 1 4 4 C 1.50700 * 109.47212 * 274.99489 * 3 2 1 5 5 H 1.08001 * 119.99883 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00047 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99977 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99802 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.46908 * 60.00358 * 8 6 4 10 10 H 1.48505 * 109.46699 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47033 * 299.99701 * 8 6 4 12 12 S 1.65597 * 120.00136 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40170 * 156.46336 * 12 2 1 14 14 O 1.42104 * 106.39912 * 23.54408 * 12 2 1 15 15 N 1.65593 * 107.22190 * 270.00663 * 12 2 1 16 16 C 1.47272 * 121.35878 * 89.99679 * 15 12 2 17 17 C 1.52987 * 108.18606 * 118.52147 * 16 15 12 18 18 N 1.45639 * 110.77615 * 46.72756 * 17 16 15 19 19 C 1.33384 * 124.58975 * 338.11891 * 18 17 16 20 20 O 1.21280 * 118.48691 * 184.01099 * 19 18 17 21 21 C 1.47052 * 121.36156 * 270.04091 * 15 12 2 22 22 H 1.08997 * 109.47638 * 270.00259 * 1 2 3 23 23 H 1.09002 * 109.47163 * 30.00267 * 1 2 3 24 24 H 1.09006 * 109.46841 * 149.99734 * 1 2 3 25 25 H 1.09000 * 109.47536 * 34.99883 * 3 2 1 26 26 H 1.08998 * 109.46623 * 155.00061 * 3 2 1 27 27 H 0.97000 * 119.99790 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.71373 * 358.84473 * 16 15 12 29 29 H 1.08994 * 109.72058 * 238.19547 * 16 15 12 30 30 H 1.09004 * 109.21604 * 286.39180 * 17 16 15 31 31 H 1.09000 * 109.21319 * 167.06555 * 17 16 15 32 32 H 0.97004 * 117.70899 * 158.10050 * 18 17 16 33 33 H 1.08997 * 109.57220 * 102.88647 * 21 15 12 34 34 H 1.09000 * 109.57171 * 342.53062 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0005 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5666 -3.4209 9 1 1.8319 3.7731 -4.0118 10 1 3.9220 4.8521 -3.4209 11 1 3.9234 2.5644 -4.2244 12 16 2.2931 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5438 14 8 1.4114 -2.4067 -0.5435 15 7 2.5381 -1.8581 1.5825 16 6 1.5623 -2.6830 2.3148 17 6 2.2563 -3.9782 2.7407 18 7 3.5573 -3.6970 3.3319 19 6 4.2585 -2.5817 3.1234 20 8 5.3644 -2.4936 3.6135 21 6 3.7383 -1.4254 2.3137 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6500 2.0043 0.5894 26 1 3.1857 1.1177 0.4343 27 1 3.9675 4.4802 -0.8472 28 1 0.7168 -2.9145 1.6669 29 1 1.2142 -2.1452 3.1966 30 1 2.3895 -4.6176 1.8679 31 1 1.6342 -4.4950 3.4715 32 1 3.9406 -4.3676 3.9186 33 1 3.4833 -0.5998 2.9782 34 1 4.5013 -1.1035 1.6051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028083234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -97.732082 kcal Electronic energy + Delta-G solvation = -20712.878135 eV Core-core repulsion = 17387.092326 eV Total energy + Delta-G solvation = -3325.785809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16483 -36.98552 -36.69936 -35.57381 -35.30219 -34.07478 -32.47302 -30.13232 -27.83409 -26.49003 -25.12601 -23.82347 -22.32961 -19.88751 -18.82325 -17.76777 -17.10165 -16.78096 -16.64418 -16.22550 -15.76726 -15.44934 -14.86543 -14.37445 -14.04515 -13.56265 -13.49835 -13.32882 -12.82556 -12.46712 -12.38239 -12.19955 -11.97229 -11.73333 -11.61709 -11.25473 -11.21823 -11.11875 -10.76630 -10.55643 -10.28888 -10.06838 -9.82608 -9.32711 -9.04564 -8.47041 -8.14443 -6.09501 -4.14144 0.96655 2.52974 3.00170 3.32187 3.33771 3.36489 3.40843 3.91285 4.38758 4.42667 4.50824 4.67998 4.88784 5.08354 5.22565 5.25477 5.33107 5.43620 5.56717 5.61610 5.79042 5.92965 6.19490 6.25297 6.50043 6.63928 7.12804 7.15569 7.31831 7.51885 7.87267 8.07586 8.15391 8.87772 9.51550 10.99044 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.005943 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.160427 B = 4710.387684 C = 5232.192216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.994 5.994 3 C 0.256 3.744 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.780 3.220 13 O -0.955 6.955 14 O -0.990 6.990 15 N -1.018 6.018 16 C 0.106 3.894 17 C 0.097 3.903 18 N -0.718 5.718 19 C 0.519 3.481 20 O -0.550 6.550 21 C 0.108 3.892 22 H 0.039 0.961 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.265 0.735 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.398 0.602 33 H 0.106 0.894 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -12.490 8.811 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.134 3.866 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.789 3.211 13 O -0.938 6.938 14 O -0.974 6.974 15 N -0.857 5.857 16 C -0.021 4.021 17 C -0.029 4.029 18 N -0.371 5.371 19 C 0.305 3.695 20 O -0.427 6.427 21 C -0.021 4.021 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.233 0.767 33 H 0.124 0.876 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.070 -12.557 8.177 16.168 hybrid contribution 0.008 0.396 -0.356 0.533 sum -6.062 -12.161 7.822 15.678 Atomic orbital electron populations 1.21368 0.79997 1.03592 1.00247 1.57670 1.14439 1.23312 1.88238 1.19086 0.90965 0.78674 0.97840 1.21426 1.36455 1.06467 0.92808 0.92217 1.24927 0.94993 0.96458 0.97537 1.69903 1.37059 1.15355 1.31033 0.86565 0.78307 0.78054 0.84594 1.20165 1.21119 1.19964 1.02138 0.73627 0.72905 0.72453 1.93639 1.40442 1.84832 1.74906 1.93520 1.67350 1.60445 1.76089 1.58854 1.28805 1.65474 1.32538 1.21695 0.91706 0.90379 0.98283 1.21738 0.84101 0.97961 0.99098 1.45303 1.20976 1.20404 1.50372 1.20363 0.84685 0.83979 0.80474 1.90786 1.19703 1.81023 1.51208 1.21607 0.88026 0.95126 0.97302 0.94227 0.90243 0.91578 0.94602 0.94458 0.92537 0.87282 0.90254 0.91028 0.89352 0.76670 0.87605 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.68 59.85 0.64 2.13 16 2 N -0.99 -19.45 3.23 -123.05 -0.40 -19.84 16 3 C 0.26 6.18 5.08 -5.19 -0.03 6.15 16 4 C -0.53 -14.63 9.38 -34.44 -0.32 -14.95 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 S 2.78 51.92 6.13 -107.50 -0.66 51.26 16 13 O -0.95 -22.01 15.77 -57.17 -0.90 -22.91 16 14 O -0.99 -18.71 15.47 -57.17 -0.88 -19.59 16 15 N -1.02 -14.34 3.36 -114.81 -0.39 -14.72 16 16 C 0.11 1.03 6.51 -3.63 -0.02 1.00 16 17 C 0.10 0.79 7.34 -4.51 -0.03 0.76 16 18 N -0.72 -7.50 5.42 -61.33 -0.33 -7.83 16 19 C 0.52 7.40 7.84 -11.73 -0.09 7.31 16 20 O -0.55 -9.76 17.80 5.56 0.10 -9.66 16 21 C 0.11 1.56 6.65 -5.02 -0.03 1.52 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 24 H 0.07 0.97 7.02 -51.93 -0.36 0.60 16 25 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 26 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.11 0.98 7.11 -51.93 -0.37 0.61 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 3.45 8.80 -40.82 -0.36 3.09 16 33 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.13 2.17 6.98 -51.93 -0.36 1.81 16 LS Contribution 300.79 15.07 4.53 4.53 Total: -1.00 -35.17 300.79 -7.55 -42.72 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.35 Total: -1.14 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 0.01 Total: 5.60 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.38 Total: -67.38 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -1.69 Total: -52.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.66 Total: 51.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.17 -7.55 -42.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028083234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.009 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds