Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99515 * 2 1 4 4 C 1.50700 * 109.47212 * 274.99489 * 3 2 1 5 5 H 1.08001 * 119.99883 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00047 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99977 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99802 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.46908 * 60.00358 * 8 6 4 10 10 H 1.48505 * 109.46699 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47033 * 299.99701 * 8 6 4 12 12 S 1.65597 * 120.00136 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40170 * 156.46336 * 12 2 1 14 14 O 1.42104 * 106.39912 * 23.54408 * 12 2 1 15 15 N 1.65593 * 107.22190 * 270.00663 * 12 2 1 16 16 C 1.47272 * 121.35878 * 89.99679 * 15 12 2 17 17 C 1.52987 * 108.18606 * 118.52147 * 16 15 12 18 18 N 1.45639 * 110.77615 * 46.72756 * 17 16 15 19 19 C 1.33384 * 124.58975 * 338.11891 * 18 17 16 20 20 O 1.21280 * 118.48691 * 184.01099 * 19 18 17 21 21 C 1.47052 * 121.36156 * 270.04091 * 15 12 2 22 22 H 1.08997 * 109.47638 * 270.00259 * 1 2 3 23 23 H 1.09002 * 109.47163 * 30.00267 * 1 2 3 24 24 H 1.09006 * 109.46841 * 149.99734 * 1 2 3 25 25 H 1.09000 * 109.47536 * 34.99883 * 3 2 1 26 26 H 1.08998 * 109.46623 * 155.00061 * 3 2 1 27 27 H 0.97000 * 119.99790 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.71373 * 358.84473 * 16 15 12 29 29 H 1.08994 * 109.72058 * 238.19547 * 16 15 12 30 30 H 1.09004 * 109.21604 * 286.39180 * 17 16 15 31 31 H 1.09000 * 109.21319 * 167.06555 * 17 16 15 32 32 H 0.97004 * 117.70899 * 158.10050 * 18 17 16 33 33 H 1.08997 * 109.57220 * 102.88647 * 21 15 12 34 34 H 1.09000 * 109.57171 * 342.53062 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9283 1.1938 -2.2331 6 6 3.0005 2.9504 -1.6664 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5666 -3.4209 9 1 1.8319 3.7731 -4.0118 10 1 3.9220 4.8521 -3.4209 11 1 3.9234 2.5644 -4.2244 12 16 2.2931 -1.4341 0.0006 13 8 3.5760 -1.1569 -0.5438 14 8 1.4114 -2.4067 -0.5435 15 7 2.5381 -1.8581 1.5825 16 6 1.5623 -2.6830 2.3148 17 6 2.2563 -3.9782 2.7407 18 7 3.5573 -3.6970 3.3319 19 6 4.2585 -2.5817 3.1234 20 8 5.3644 -2.4936 3.6135 21 6 3.7383 -1.4254 2.3137 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6500 2.0043 0.5894 26 1 3.1857 1.1177 0.4343 27 1 3.9675 4.4802 -0.8472 28 1 0.7168 -2.9145 1.6669 29 1 1.2142 -2.1452 3.1966 30 1 2.3895 -4.6176 1.8679 31 1 1.6342 -4.4950 3.4715 32 1 3.9406 -4.3676 3.9186 33 1 3.4833 -0.5998 2.9782 34 1 4.5013 -1.1035 1.6051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028083234.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = -127.546634 kcal Electronic energy + Delta-G solvation = -20714.170991 eV Core-core repulsion = 17387.092326 eV Total energy + Delta-G solvation = -3327.078665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22723 -38.43518 -37.89713 -37.21572 -36.90072 -35.09301 -34.49873 -31.09243 -29.65411 -27.56818 -26.74941 -24.73546 -24.18694 -21.00352 -19.95955 -19.23344 -18.51915 -18.30446 -18.12446 -17.54468 -16.98082 -16.78248 -16.39582 -15.75850 -15.14001 -15.09317 -14.94389 -14.44139 -14.08784 -13.88001 -13.79063 -13.66404 -13.34911 -13.26463 -13.04493 -12.94346 -12.83638 -12.48251 -12.42321 -12.32787 -11.95608 -11.77049 -11.45908 -10.59777 -10.29852 -10.07281 -9.77031 -8.20321 -6.32173 -0.48411 1.39648 1.41362 1.43320 1.50079 1.85143 2.23593 2.39067 2.50964 3.11031 3.25985 3.43959 3.70048 4.04029 4.10889 4.15778 4.36151 4.39165 4.60108 4.73049 4.77110 4.86040 4.98811 5.09330 5.15413 5.26102 5.48692 5.69852 5.79424 5.93432 6.10421 6.16350 6.75928 7.06491 7.36887 8.86857 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026480 B = 0.005943 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.160427 B = 4710.387684 C = 5232.192216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.001 6.001 3 C 0.271 3.729 4 C -0.551 4.551 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.279 1.279 12 S 2.796 3.204 13 O -1.007 7.007 14 O -0.992 6.992 15 N -1.010 6.010 16 C 0.092 3.908 17 C 0.093 3.907 18 N -0.702 5.702 19 C 0.520 3.480 20 O -0.593 6.593 21 C 0.106 3.894 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.122 0.878 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.410 0.590 33 H 0.123 0.877 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 -13.765 9.527 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.843 5.843 3 C 0.147 3.853 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.204 1.204 12 S 2.805 3.195 13 O -0.991 6.991 14 O -0.976 6.976 15 N -0.851 5.851 16 C -0.032 4.032 17 C -0.032 4.032 18 N -0.353 5.353 19 C 0.305 3.695 20 O -0.474 6.474 21 C -0.022 4.022 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.247 0.753 33 H 0.140 0.860 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.005 -13.878 8.884 18.320 hybrid contribution 0.498 0.674 -0.517 0.984 sum -7.507 -13.204 8.367 17.341 Atomic orbital electron populations 1.21620 0.77708 1.03674 1.02803 1.57555 1.15979 1.21838 1.88958 1.18622 0.90471 0.80343 0.95839 1.21811 1.36320 1.06654 0.94269 0.92994 1.25721 0.94803 0.96814 1.01316 1.69993 1.37734 1.15757 1.32792 0.85675 0.78841 0.77544 0.80074 1.18684 1.20221 1.20440 1.01390 0.72371 0.72520 0.73195 1.93570 1.43041 1.85491 1.77000 1.93506 1.67131 1.60109 1.76890 1.58417 1.29561 1.65794 1.31359 1.22209 0.91155 0.90737 0.99131 1.22038 0.83247 0.97326 1.00588 1.45244 1.21461 1.19166 1.49456 1.20218 0.84318 0.84770 0.80149 1.90768 1.21535 1.81996 1.53130 1.21563 0.87513 0.96222 0.96915 0.90413 0.91346 0.90323 0.95145 0.96516 0.92361 0.86020 0.87377 0.90971 0.84336 0.75293 0.85969 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.59 10.68 127.77 1.36 3.95 16 2 N -1.00 -38.78 3.23 -543.21 -1.75 -40.53 16 3 C 0.27 13.31 5.08 85.63 0.43 13.74 16 4 C -0.55 -30.80 9.38 25.60 0.24 -30.56 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.92 -53.83 13.29 21.45 0.28 -53.55 16 8 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 9 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 S 2.80 103.46 6.13 -56.49 -0.35 103.11 16 13 O -1.01 -47.96 15.77 -128.00 -2.02 -49.98 16 14 O -0.99 -36.02 15.47 -128.00 -1.98 -38.00 16 15 N -1.01 -27.02 3.36 -517.15 -1.74 -28.76 16 16 C 0.09 1.45 6.51 86.23 0.56 2.01 16 17 C 0.09 1.13 7.34 86.54 0.63 1.76 16 18 N -0.70 -12.80 5.42 -467.10 -2.53 -15.33 16 19 C 0.52 14.39 7.84 87.79 0.69 15.08 16 20 O -0.59 -21.19 17.80 -3.03 -0.05 -21.24 16 21 C 0.11 3.07 6.65 85.45 0.57 3.64 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 24 H 0.08 2.13 7.02 -2.38 -0.02 2.11 16 25 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 26 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 27 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.12 1.68 7.11 -2.39 -0.02 1.67 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.41 5.95 8.80 -92.71 -0.82 5.14 16 33 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 3.61 6.98 -2.39 -0.02 3.59 16 Total: -1.00 -77.96 300.79 -2.85 -80.81 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.31 Total: 6.20 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.95 Total: 10.84 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -5.74 Total: -138.17 kcal Atomic # 8 Polarization: -105.17 SS G_CDS: -4.05 Total: -109.22 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -0.35 Total: 103.11 kcal Total: -77.96 -2.85 -80.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028083234.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.738 kcal (2) G-P(sol) polarization free energy of solvation -77.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds