Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.26358 * 2 1 4 4 C 1.53742 * 110.38099 * 237.88096 * 2 1 3 5 5 C 1.51214 * 104.58560 * 241.02811 * 4 2 1 6 6 C 1.38184 * 130.97228 * 180.02562 * 5 4 2 7 7 C 1.38222 * 120.14960 * 179.97438 * 6 5 4 8 8 C 1.38296 * 119.82706 * 359.97438 * 7 6 5 9 9 C 1.37843 * 120.22612 * 0.02562 * 8 7 6 10 10 C 1.38558 * 108.55666 * 359.97438 * 5 4 2 11 11 N 1.39834 * 111.62105 * 0.02562 * 10 5 4 12 12 C 1.34771 * 124.98197 * 179.97438 * 11 10 5 13 13 O 1.21286 * 120.00710 * 180.02562 * 12 11 10 14 14 C 1.50705 * 119.99854 * 0.02562 * 12 11 10 15 15 S 1.81001 * 109.47192 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00214 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99861 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00313 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00184 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47181 * 59.99910 * 20 18 16 22 22 H 1.48493 * 109.47156 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47064 * 300.00048 * 20 18 16 24 24 H 1.08994 * 109.47114 * 299.30176 * 1 2 3 25 25 H 1.09000 * 109.47241 * 59.30231 * 1 2 3 26 26 H 1.09004 * 109.46955 * 179.29657 * 1 2 3 27 27 H 1.08998 * 110.41090 * 359.80425 * 4 2 1 28 28 H 1.09007 * 110.41292 * 122.25090 * 4 2 1 29 29 H 1.07997 * 119.92151 * 359.97438 * 6 5 4 30 30 H 1.07998 * 120.08449 * 180.02562 * 7 6 5 31 31 H 1.08004 * 119.88523 * 180.02562 * 8 7 6 32 32 H 1.07997 * 119.85521 * 180.02562 * 9 8 7 33 33 H 1.08994 * 109.47598 * 300.00154 * 14 12 11 34 34 H 1.09003 * 109.46883 * 60.00803 * 14 12 11 35 35 H 0.97001 * 120.00016 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9075 1.0226 0.0000 4 6 2.0654 -0.7662 -1.2206 5 6 2.8625 -1.9091 -0.6331 6 6 3.5729 -2.9257 -1.2425 7 6 4.2310 -3.8690 -0.4759 8 6 4.1776 -3.7928 0.9039 9 6 3.4703 -2.7805 1.5161 10 6 2.8029 -1.8239 0.7485 11 7 2.0387 -0.7293 1.1648 12 6 1.8041 -0.3943 2.4489 13 8 1.1255 0.5769 2.7082 14 6 2.3851 -1.2266 3.5629 15 16 1.8943 -0.5264 5.1582 16 6 2.6877 -1.6613 6.2477 17 1 3.2631 -2.4825 5.8465 18 6 2.5734 -1.5000 7.6215 19 7 1.8726 -0.4988 8.1105 20 14 3.4153 -2.7027 8.7765 21 1 4.8800 -2.6799 8.5333 22 1 3.1404 -2.3134 10.1829 23 1 2.8941 -4.0715 8.5315 24 1 -0.3633 0.5029 0.8961 25 1 -0.3634 0.5246 -0.8836 26 1 -0.3633 -1.0276 -0.0126 27 1 1.2402 -1.1478 -1.8218 28 1 2.7089 -0.1230 -1.8210 29 1 3.6138 -2.9834 -2.3202 30 1 4.7862 -4.6628 -0.9533 31 1 4.6919 -4.5291 1.5038 32 1 3.4329 -2.7265 2.5941 33 1 2.0133 -2.2482 3.4852 34 1 3.4723 -1.2287 3.4858 35 1 1.7924 -0.3862 9.0706 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041748278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = 0.300992 kcal Electronic energy + Delta-G solvation = -18825.965807 eV Core-core repulsion = 15915.280294 eV Total energy + Delta-G solvation = -2910.685513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21810 -38.50714 -36.42529 -33.31495 -32.46380 -30.96288 -29.64398 -29.12397 -26.52377 -25.53302 -23.16614 -22.02925 -21.37798 -19.63220 -17.89871 -16.75294 -16.57693 -16.02486 -15.58870 -14.83587 -14.71658 -14.56510 -14.29288 -13.74082 -13.54213 -13.18193 -12.91720 -12.77606 -12.54422 -12.42051 -12.12404 -11.80806 -11.57455 -11.14663 -11.09577 -11.05571 -10.92682 -10.71269 -10.24982 -9.84278 -9.60807 -9.09090 -8.85836 -8.28225 -7.76127 -6.56264 -6.24865 -3.96816 1.25624 1.31978 2.68745 2.89084 3.21666 3.22154 3.27283 3.46746 3.76066 4.15878 4.29464 4.39446 4.77217 4.85791 4.93669 5.02505 5.10551 5.21099 5.29861 5.38479 5.39303 5.51859 5.53498 5.61485 5.74237 5.80940 5.89815 5.92880 6.01636 6.15143 6.22396 6.37501 6.46813 6.55087 6.91131 7.53251 7.56290 8.26625 8.31605 9.20288 10.82552 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.021631 B = 0.005120 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.114065 B = 5467.408528 C = 6668.610483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.089 0.911 4 C -0.081 4.081 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.151 4.151 8 C -0.085 4.085 9 C -0.161 4.161 10 C 0.158 3.842 11 N -0.555 5.555 12 C 0.544 3.456 13 O -0.491 6.491 14 C -0.156 4.156 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -4.886 -19.794 20.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.107 0.893 4 C -0.118 4.118 5 C -0.147 4.147 6 C -0.095 4.095 7 C -0.170 4.170 8 C -0.103 4.103 9 C -0.182 4.182 10 C 0.062 3.938 11 N -0.280 5.280 12 C 0.334 3.666 13 O -0.363 6.363 14 C -0.306 4.306 15 S 0.168 5.832 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.684 -3.186 -19.091 19.428 hybrid contribution 1.353 -1.907 0.490 2.389 sum 3.037 -5.093 -18.601 19.524 Atomic orbital electron populations 1.22170 0.93596 1.02739 1.03644 1.21607 0.95512 0.96434 0.83331 0.89349 1.21202 0.99168 0.94587 0.96864 1.20001 1.03041 0.98990 0.92683 1.20335 0.96308 0.93301 0.99546 1.20974 1.02141 1.00010 0.93881 1.20923 0.97509 0.97154 0.94751 1.21329 1.00313 0.95159 1.01400 1.18403 0.93196 0.88869 0.93344 1.46244 1.48893 1.26426 1.06398 1.20321 0.79830 0.85088 0.81383 1.90709 1.36570 1.26815 1.82251 1.23925 1.03925 1.02670 1.00065 1.85397 1.68484 1.39053 0.90293 1.22796 1.37612 1.14986 0.93052 0.90865 1.24985 0.95176 0.95993 0.97280 1.70003 1.37874 1.28776 1.13583 0.86213 0.79687 0.80532 0.79037 1.19864 1.20771 1.19874 0.90382 0.91171 0.92248 0.89159 0.89365 0.86002 0.85834 0.85415 0.83989 0.88456 0.88455 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.05 37.16 0.34 -1.65 16 2 C 0.13 1.72 3.64 -67.52 -0.25 1.47 16 3 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.08 -0.80 6.58 -27.25 -0.18 -0.98 16 5 C -0.14 -1.72 6.23 -104.27 -0.65 -2.37 16 6 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 7 C -0.15 -1.52 10.06 -39.57 -0.40 -1.92 16 8 C -0.08 -0.98 10.02 -39.70 -0.40 -1.38 16 9 C -0.16 -2.27 8.88 -39.21 -0.35 -2.62 16 10 C 0.16 2.31 6.59 -83.57 -0.55 1.76 16 11 N -0.56 -8.94 2.89 -105.85 -0.31 -9.24 16 12 C 0.54 10.82 7.61 -10.99 -0.08 10.74 16 13 O -0.49 -11.17 14.78 5.55 0.08 -11.08 16 14 C -0.16 -3.26 3.98 36.01 0.14 -3.12 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.08 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 20 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.08 1.17 6.80 -51.93 -0.35 0.82 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 28 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.14 2.15 4.21 -52.49 -0.22 1.93 16 33 H 0.10 1.92 6.91 -51.92 -0.36 1.56 16 34 H 0.10 1.92 6.91 -51.92 -0.36 1.56 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -33.08 305.40 -8.89 -41.97 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.20 Total: 0.68 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.57 Total: -14.08 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.43 Total: -34.50 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.08 -8.89 -41.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041748278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.271 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds