Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38491 * 119.81582 * 2 1 4 4 C 1.37806 * 120.18200 * 179.72273 * 3 2 1 5 5 C 1.40032 * 119.81555 * 0.54519 * 4 3 2 6 6 C 1.47046 * 120.18461 * 179.74334 * 5 4 3 7 7 N 1.30446 * 119.99656 * 359.97438 * 6 5 4 8 8 N 1.40104 * 119.99946 * 179.97438 * 7 6 5 9 9 C 1.34770 * 120.00339 * 179.97438 * 8 7 6 10 10 O 1.21919 * 120.00103 * 359.97438 * 9 8 7 11 11 C 1.41054 * 120.00214 * 179.97438 * 9 8 7 12 12 H 1.07997 * 119.99971 * 6.34424 * 11 9 8 13 13 C 1.40224 * 120.00247 * 186.34730 * 11 9 8 14 14 N 1.30587 * 120.00003 * 353.71518 * 13 11 9 15 15 Si 1.86803 * 120.00210 * 173.71606 * 13 11 9 16 16 H 1.48496 * 109.47217 * 94.83999 * 15 13 11 17 17 H 1.48495 * 109.47177 * 214.84075 * 15 13 11 18 18 H 1.48503 * 109.46776 * 334.83902 * 15 13 11 19 19 C 1.39994 * 119.63312 * 359.72694 * 5 4 3 20 20 C 1.37846 * 119.81591 * 0.02562 * 19 5 4 21 21 N 1.48012 * 119.91202 * 180.02562 * 20 19 5 22 22 O 1.21806 * 119.99732 * 353.42145 * 21 20 19 23 23 O 1.21796 * 120.00437 * 173.42847 * 21 20 19 24 24 H 1.09003 * 109.46754 * 262.74570 * 1 2 3 25 25 H 1.08995 * 109.47144 * 142.74065 * 1 2 3 26 26 H 1.08991 * 109.46911 * 22.74048 * 1 2 3 27 27 H 1.07998 * 119.91343 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09435 * 180.29325 * 4 3 2 29 29 H 1.08004 * 119.99867 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99511 * 359.97438 * 8 7 6 31 31 H 0.97003 * 120.00454 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.09052 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2016 0.0000 4 6 3.5737 1.2104 0.0058 5 6 4.2777 -0.0001 0.0001 6 6 5.7482 -0.0001 0.0005 7 7 6.4004 1.1296 0.0056 8 7 7.8014 1.1297 0.0065 9 6 8.4753 2.2968 0.0113 10 8 7.8657 3.3527 0.0144 11 6 9.8858 2.2968 0.0128 12 1 10.4259 1.3676 -0.0933 13 6 10.5868 3.5032 0.1520 14 7 9.9398 4.6375 0.1570 15 14 12.4463 3.4878 0.3304 16 1 13.0730 3.6840 -1.0014 17 1 12.8653 4.5836 1.2408 18 1 12.8787 2.1836 0.8938 19 6 3.5739 -1.2102 -0.0056 20 6 2.1954 -1.2013 -0.0062 21 7 1.4491 -2.4795 -0.0116 22 8 2.0471 -3.5333 -0.1365 23 8 0.2371 -2.4776 0.1086 24 1 -0.3633 -0.1298 1.0195 25 1 -0.3633 -0.8179 -0.6221 26 1 -0.3633 0.9477 -0.3972 27 1 1.6513 2.1343 -0.0004 28 1 4.1092 2.1482 0.0105 29 1 6.2882 -0.9354 -0.0035 30 1 8.2864 0.2896 0.0037 31 1 10.4247 5.4721 0.2536 32 1 4.1094 -2.1481 -0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059465359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = 24.236919 kcal Electronic energy + Delta-G solvation = -19742.838061 eV Core-core repulsion = 16286.897273 eV Total energy + Delta-G solvation = -3455.940788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.28400 -39.59904 -37.82584 -36.73275 -35.63275 -33.42426 -32.67715 -32.02799 -30.56388 -28.09642 -26.79305 -25.70476 -23.08375 -22.78324 -21.16841 -20.12097 -18.76000 -18.52287 -17.64491 -17.40787 -16.61430 -16.03032 -15.66645 -15.10529 -14.82066 -14.18066 -14.13901 -13.51080 -13.46075 -12.94508 -12.80736 -12.63576 -12.29015 -11.78734 -11.54886 -11.52065 -11.44930 -11.18774 -11.05466 -10.79383 -10.70871 -10.48542 -9.84196 -9.67959 -9.36357 -9.05121 -7.95734 -7.60307 -6.55266 -5.09260 -0.16346 0.58359 1.31913 1.36089 2.42534 2.96227 3.02819 3.07474 3.41848 3.45660 3.93977 4.23143 4.29656 4.32459 4.64320 4.73679 4.83606 5.09665 5.27258 5.37188 5.40517 5.55105 5.56996 5.69211 5.83071 5.96686 6.11901 6.18605 6.42353 6.51967 7.08246 7.62294 7.62604 7.83888 8.37019 8.62559 9.07447 10.23802 10.44467 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.002960 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.542656 B = 9456.944017 C =10050.577967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 C -0.121 4.121 4 C -0.039 4.039 5 C -0.014 4.014 6 C 0.004 3.996 7 N -0.175 5.175 8 N -0.580 5.580 9 C 0.555 3.445 10 O -0.551 6.551 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.088 3.912 14 N -0.743 5.743 15 Si 0.918 3.082 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.046 4.046 20 C -0.048 4.048 21 N 0.036 4.964 22 O -0.172 6.172 23 O -0.165 6.165 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.156 0.844 29 H 0.115 0.885 30 H 0.373 0.627 31 H 0.276 0.724 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 -8.711 0.017 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.059 4.059 5 C -0.017 4.017 6 C -0.204 4.204 7 N 0.014 4.986 8 N -0.326 5.326 9 C 0.364 3.636 10 O -0.431 6.431 11 C -0.571 4.571 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.370 5.370 15 Si 0.742 3.258 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.185 1.185 19 C -0.068 4.068 20 C -0.132 4.132 21 N 0.552 4.448 22 O -0.385 6.385 23 O -0.378 6.378 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.133 0.867 30 H 0.209 0.791 31 H 0.087 0.913 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.030 -6.083 0.037 13.481 hybrid contribution 1.317 -1.703 0.094 2.155 sum -10.713 -7.786 0.131 13.244 Atomic orbital electron populations 1.21279 0.88795 1.04231 1.04340 1.19963 0.97847 0.90499 0.94440 1.21109 0.94113 0.96970 1.01737 1.22063 0.93800 0.99476 0.90580 1.18342 0.91636 0.91599 1.00132 1.23685 0.92068 0.94933 1.09698 1.74617 0.96032 1.25498 1.02492 1.48234 0.97889 1.11279 1.75223 1.16970 0.87671 0.80477 0.78512 1.90713 1.69360 1.29151 1.53840 1.19819 0.89684 0.94935 1.52680 0.90866 1.25781 1.00816 0.94580 0.92456 1.69989 1.37436 0.98372 1.31175 0.86171 0.81517 0.79134 0.78991 1.19405 1.19987 1.18503 1.20988 0.90731 0.99829 0.95261 1.20678 0.92048 0.83013 1.17447 1.43584 1.01047 1.02834 0.97373 1.94537 1.70521 1.19869 1.53600 1.94447 0.96486 1.93764 1.53136 0.89574 0.88623 0.90936 0.83503 0.82627 0.86734 0.79114 0.91293 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.66 36.01 0.31 -0.81 16 2 C -0.02 -0.27 5.89 -104.44 -0.62 -0.88 16 3 C -0.12 -1.26 9.65 -39.65 -0.38 -1.64 16 4 C -0.04 -0.50 9.59 -39.07 -0.37 -0.88 16 5 C -0.01 -0.19 5.88 -105.00 -0.62 -0.80 16 6 C 0.00 0.07 10.76 -14.57 -0.16 -0.09 16 7 N -0.18 -3.55 10.19 32.16 0.33 -3.22 16 8 N -0.58 -12.85 6.26 28.99 0.18 -12.67 16 9 C 0.55 15.26 7.66 -15.20 -0.12 15.14 16 10 O -0.55 -17.48 15.23 4.99 0.08 -17.40 16 11 C -0.53 -14.09 9.27 -37.77 -0.35 -14.44 16 12 H 0.07 1.72 7.86 -52.49 -0.41 1.31 16 13 C 0.09 2.28 5.49 -17.34 -0.10 2.18 16 14 N -0.74 -20.87 11.74 55.56 0.65 -20.22 16 15 Si 0.92 18.54 29.57 -169.99 -5.03 13.52 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 C -0.05 -0.55 9.31 -39.07 -0.36 -0.91 16 20 C -0.05 -0.59 6.82 -80.01 -0.55 -1.14 16 21 N 0.04 0.49 4.45 33.93 0.15 0.64 16 22 O -0.17 -2.45 18.45 -29.46 -0.54 -3.00 16 23 O -0.16 -2.18 15.34 -29.46 -0.45 -2.64 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.90 5.86 -51.93 -0.30 0.60 16 26 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 27 H 0.15 1.13 8.05 -52.49 -0.42 0.71 16 28 H 0.16 2.23 7.55 -52.49 -0.40 1.83 16 29 H 0.12 1.43 8.03 -52.48 -0.42 1.01 16 30 H 0.37 6.86 8.61 -182.59 -1.57 5.29 16 31 H 0.28 6.92 8.29 -40.82 -0.34 6.59 16 32 H 0.15 1.59 7.62 -52.49 -0.40 1.19 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -33.19 299.57 -7.33 -40.52 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.90 Total: 4.23 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.31 Total: -4.28 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 1.31 Total: -35.46 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.92 Total: -23.03 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.19 -7.33 -40.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.754 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds