Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38491 * 119.81582 * 2 1 4 4 C 1.37806 * 120.18200 * 179.72273 * 3 2 1 5 5 C 1.40032 * 119.81555 * 0.54519 * 4 3 2 6 6 C 1.47046 * 120.18461 * 179.74334 * 5 4 3 7 7 N 1.30446 * 119.99656 * 359.97438 * 6 5 4 8 8 N 1.40104 * 119.99946 * 179.97438 * 7 6 5 9 9 C 1.34770 * 120.00339 * 179.97438 * 8 7 6 10 10 O 1.21919 * 120.00103 * 359.97438 * 9 8 7 11 11 C 1.41054 * 120.00214 * 179.97438 * 9 8 7 12 12 H 1.07997 * 119.99971 * 6.34424 * 11 9 8 13 13 C 1.40224 * 120.00247 * 186.34730 * 11 9 8 14 14 N 1.30587 * 120.00003 * 353.71518 * 13 11 9 15 15 Si 1.86803 * 120.00210 * 173.71606 * 13 11 9 16 16 H 1.48496 * 109.47217 * 94.83999 * 15 13 11 17 17 H 1.48495 * 109.47177 * 214.84075 * 15 13 11 18 18 H 1.48503 * 109.46776 * 334.83902 * 15 13 11 19 19 C 1.39994 * 119.63312 * 359.72694 * 5 4 3 20 20 C 1.37846 * 119.81591 * 0.02562 * 19 5 4 21 21 N 1.48012 * 119.91202 * 180.02562 * 20 19 5 22 22 O 1.21806 * 119.99732 * 353.42145 * 21 20 19 23 23 O 1.21796 * 120.00437 * 173.42847 * 21 20 19 24 24 H 1.09003 * 109.46754 * 262.74570 * 1 2 3 25 25 H 1.08995 * 109.47144 * 142.74065 * 1 2 3 26 26 H 1.08991 * 109.46911 * 22.74048 * 1 2 3 27 27 H 1.07998 * 119.91343 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.09435 * 180.29325 * 4 3 2 29 29 H 1.08004 * 119.99867 * 179.97438 * 6 5 4 30 30 H 0.97005 * 119.99511 * 359.97438 * 8 7 6 31 31 H 0.97003 * 120.00454 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.09052 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2016 0.0000 4 6 3.5737 1.2104 0.0058 5 6 4.2777 -0.0001 0.0001 6 6 5.7482 -0.0001 0.0005 7 7 6.4004 1.1296 0.0056 8 7 7.8014 1.1297 0.0065 9 6 8.4753 2.2968 0.0113 10 8 7.8657 3.3527 0.0144 11 6 9.8858 2.2968 0.0128 12 1 10.4259 1.3676 -0.0933 13 6 10.5868 3.5032 0.1520 14 7 9.9398 4.6375 0.1570 15 14 12.4463 3.4878 0.3304 16 1 13.0730 3.6840 -1.0014 17 1 12.8653 4.5836 1.2408 18 1 12.8787 2.1836 0.8938 19 6 3.5739 -1.2102 -0.0056 20 6 2.1954 -1.2013 -0.0062 21 7 1.4491 -2.4795 -0.0116 22 8 2.0471 -3.5333 -0.1365 23 8 0.2371 -2.4776 0.1086 24 1 -0.3633 -0.1298 1.0195 25 1 -0.3633 -0.8179 -0.6221 26 1 -0.3633 0.9477 -0.3972 27 1 1.6513 2.1343 -0.0004 28 1 4.1092 2.1482 0.0105 29 1 6.2882 -0.9354 -0.0035 30 1 8.2864 0.2896 0.0037 31 1 10.4247 5.4721 0.2536 32 1 4.1094 -2.1481 -0.0105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059465359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = 2.164326 kcal Electronic energy + Delta-G solvation = -19743.795201 eV Core-core repulsion = 16286.897273 eV Total energy + Delta-G solvation = -3456.897927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.31270 -40.62143 -39.62625 -37.78860 -37.19300 -34.89096 -34.39969 -33.01360 -32.05433 -29.31357 -28.39638 -26.83691 -24.25949 -23.77189 -22.49123 -21.72857 -20.03369 -19.71963 -18.91537 -18.67422 -17.96655 -17.63948 -16.98611 -16.22246 -16.04461 -15.61456 -15.34094 -14.90123 -14.72322 -14.51893 -13.83644 -13.65487 -13.35458 -13.26582 -13.00032 -12.79567 -12.68119 -12.63185 -12.49018 -12.22803 -12.04274 -11.65143 -11.19082 -11.03752 -10.72065 -10.42247 -10.04612 -9.15706 -8.47225 -7.12134 -1.18703 -0.45652 0.30269 0.34836 1.20640 1.38864 1.42449 1.57356 1.93853 2.27944 2.31948 2.47671 3.32686 3.34883 3.58174 3.60875 3.77990 3.81295 4.08338 4.39432 4.41709 4.58041 4.68027 4.71433 4.98188 5.06574 5.10684 5.15551 5.18417 5.25240 5.56353 5.75161 5.97021 6.55933 6.65420 6.79936 7.34592 8.35759 8.52272 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.045477 B = 0.002960 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.542656 B = 9456.944017 C =10050.577967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.112 4.112 4 C -0.042 4.042 5 C -0.042 4.042 6 C 0.058 3.942 7 N -0.245 5.245 8 N -0.590 5.590 9 C 0.544 3.456 10 O -0.612 6.612 11 C -0.561 4.561 12 H 0.096 0.904 13 C 0.032 3.968 14 N -0.799 5.799 15 Si 1.008 2.992 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.245 1.245 19 C -0.027 4.027 20 C -0.064 4.064 21 N 0.036 4.964 22 O -0.199 6.199 23 O -0.153 6.153 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.179 0.821 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.388 0.612 31 H 0.282 0.718 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.797 -10.175 0.157 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.012 4.012 3 C -0.130 4.130 4 C -0.062 4.062 5 C -0.046 4.046 6 C -0.152 4.152 7 N -0.053 5.053 8 N -0.335 5.335 9 C 0.354 3.646 10 O -0.497 6.497 11 C -0.597 4.597 12 H 0.114 0.886 13 C -0.187 4.187 14 N -0.427 5.427 15 Si 0.825 3.175 16 H -0.184 1.184 17 H -0.195 1.195 18 H -0.168 1.168 19 C -0.049 4.049 20 C -0.148 4.148 21 N 0.550 4.450 22 O -0.406 6.406 23 O -0.371 6.371 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.196 0.804 28 H 0.154 0.846 29 H 0.164 0.836 30 H 0.226 0.774 31 H 0.093 0.907 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.701 -7.651 0.166 14.828 hybrid contribution 1.101 -1.424 0.042 1.800 sum -11.601 -9.075 0.208 14.730 Atomic orbital electron populations 1.21390 0.86832 1.05576 1.04980 1.20338 0.99235 0.89833 0.91745 1.21372 0.92995 0.98216 1.00456 1.22067 0.95050 0.98645 0.90463 1.18273 0.90589 0.92456 1.03241 1.24336 0.93117 0.95164 1.02581 1.74695 0.94761 1.27788 1.08043 1.47378 0.99142 1.10342 1.76679 1.17273 0.88528 0.80966 0.77826 1.90646 1.70740 1.31645 1.56674 1.20381 0.89985 0.96400 1.52960 0.88563 1.27114 1.06979 0.93641 0.90991 1.70147 1.40328 0.99555 1.32639 0.84860 0.73457 0.79796 0.79341 1.18378 1.19471 1.16815 1.21055 0.90813 0.99796 0.93198 1.20845 0.92291 0.83053 1.18616 1.43700 1.01087 1.03021 0.97204 1.94545 1.70589 1.20371 1.55079 1.94437 0.96574 1.93830 1.52228 0.88486 0.89181 0.88263 0.80379 0.84608 0.83576 0.77400 0.90727 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.66 71.24 0.62 -1.16 16 2 C -0.01 -0.17 5.89 -19.75 -0.12 -0.28 16 3 C -0.11 -2.04 9.65 22.23 0.21 -1.82 16 4 C -0.04 -1.04 9.59 22.60 0.22 -0.82 16 5 C -0.04 -1.07 5.88 -20.11 -0.12 -1.19 16 6 C 0.06 1.71 10.76 87.21 0.94 2.65 16 7 N -0.25 -10.18 10.19 -52.15 -0.53 -10.71 16 8 N -0.59 -26.95 6.26 -180.31 -1.13 -28.08 16 9 C 0.54 31.32 7.66 84.93 0.65 31.97 16 10 O -0.61 -41.13 15.23 -5.05 -0.08 -41.20 16 11 C -0.56 -30.29 9.27 23.44 0.22 -30.07 16 12 H 0.10 4.52 7.86 -2.91 -0.02 4.50 16 13 C 0.03 1.68 5.49 85.36 0.47 2.14 16 14 N -0.80 -46.72 11.74 21.87 0.26 -46.47 16 15 Si 1.01 38.00 29.57 68.60 2.03 40.02 16 16 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 17 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 19 C -0.03 -0.58 9.31 22.60 0.21 -0.37 16 20 C -0.06 -1.42 6.82 36.34 0.25 -1.17 16 21 N 0.04 0.90 4.45 -46.56 -0.21 0.69 16 22 O -0.20 -5.37 18.45 18.88 0.35 -5.02 16 23 O -0.15 -3.67 15.34 18.89 0.29 -3.38 16 24 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.09 1.40 5.86 -2.39 -0.01 1.39 16 26 H 0.10 0.86 8.03 -2.39 -0.02 0.84 16 27 H 0.18 2.11 8.05 -2.91 -0.02 2.09 16 28 H 0.14 4.01 7.55 -2.91 -0.02 3.99 16 29 H 0.15 3.30 8.03 -2.91 -0.02 3.28 16 30 H 0.39 14.46 8.61 -213.31 -1.84 12.63 16 31 H 0.28 14.73 8.29 -92.71 -0.77 13.96 16 32 H 0.17 3.06 7.62 -2.91 -0.02 3.04 16 Total: -1.00 -76.81 299.57 3.87 -72.93 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -0.65 Total: 21.35 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 3.55 Total: -0.13 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -1.61 Total: -84.57 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: 0.56 Total: -49.60 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.02 kcal Total: -76.81 3.87 -72.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059465359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.099 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds