Wall clock time and date at job start Mon Mar 30 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47130 * 2 1 4 4 C 1.50699 * 109.47281 * 119.99819 * 2 1 3 5 5 H 1.07998 * 120.00303 * 120.00164 * 4 2 1 6 6 C 1.37881 * 120.00117 * 300.00494 * 4 2 1 7 7 N 1.31517 * 120.00307 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99821 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46809 * 90.00246 * 8 6 4 10 10 H 1.48495 * 109.47055 * 210.00084 * 8 6 4 11 11 H 1.48491 * 109.47086 * 330.00332 * 8 6 4 12 12 N 1.46493 * 109.47520 * 240.00147 * 2 1 3 13 13 C 1.34778 * 120.00415 * 84.99816 * 12 2 1 14 14 O 1.21282 * 119.99691 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00325 * 180.02562 * 13 12 2 16 16 H 1.09005 * 110.99847 * 339.15464 * 15 13 12 17 17 C 1.54145 * 111.10146 * 215.00076 * 15 13 12 18 18 C 1.50874 * 110.49426 * 213.70605 * 17 15 13 19 19 C 1.39592 * 126.83205 * 200.54948 * 18 17 15 20 20 C 1.37703 * 121.05853 * 180.41360 * 19 18 17 21 21 C 1.38319 * 120.54222 * 359.97438 * 20 19 18 22 22 C 1.38034 * 119.29253 * 359.86882 * 21 20 19 23 23 C 1.38825 * 120.15790 * 359.97438 * 22 21 20 24 24 S 1.77436 * 130.56934 * 180.62545 * 23 22 21 25 25 H 1.08998 * 109.47552 * 300.00107 * 1 2 3 26 26 H 1.08998 * 109.47419 * 60.00173 * 1 2 3 27 27 H 1.09006 * 109.47130 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99951 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00001 * 265.00592 * 12 2 1 30 30 H 1.08997 * 109.28173 * 93.42550 * 17 15 13 31 31 H 1.09001 * 109.27895 * 333.97769 * 17 15 13 32 32 H 1.08003 * 119.46863 * 0.39735 * 19 18 17 33 33 H 1.08001 * 119.72754 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.35296 * 179.87385 * 21 20 19 35 35 H 1.07993 * 119.91749 * 180.27010 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9954 3.9070 11 1 0.8488 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8581 1.1584 -2.4117 15 6 2.6490 -0.7287 -3.5876 16 1 3.1972 -1.6323 -3.3207 17 6 3.5120 0.2078 -4.4560 18 6 3.3331 -0.1144 -5.9190 19 6 4.2027 0.2137 -6.9606 20 6 3.9160 -0.1344 -8.2617 21 6 2.7543 -0.8207 -8.5661 22 6 1.8828 -1.1573 -7.5499 23 6 2.1736 -0.8092 -6.2378 24 16 1.2742 -1.1091 -4.7380 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9031 -0.5279 4.4375 29 1 2.2490 -1.6318 -1.1526 30 1 4.5607 0.0842 -4.1859 31 1 3.2147 1.2410 -4.2761 32 1 5.1148 0.7493 -6.7425 33 1 4.6043 0.1300 -9.0509 34 1 2.5315 -1.0904 -9.5878 35 1 0.9750 -1.6970 -7.7756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:05 Heat of formation + Delta-G solvation = -7.127833 kcal Electronic energy + Delta-G solvation = -18460.178019 eV Core-core repulsion = 15549.170368 eV Total energy + Delta-G solvation = -2911.007651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72101 -39.04175 -35.31735 -34.35290 -32.47515 -31.06339 -30.58379 -29.17760 -25.33025 -24.89870 -23.21559 -21.73640 -20.84824 -19.77475 -18.10121 -17.32829 -16.30416 -16.04304 -15.69293 -15.32567 -15.20941 -14.56697 -14.10899 -13.78846 -13.44025 -13.12236 -13.04817 -12.91082 -12.76647 -12.23196 -12.11509 -11.83005 -11.60085 -11.29988 -11.18471 -10.85456 -10.30578 -10.22877 -9.93178 -9.74995 -9.35504 -9.28794 -8.97196 -8.80679 -8.28152 -7.50313 -6.24677 -4.27966 0.94307 1.10553 1.23432 2.06547 3.21245 3.26808 3.33491 3.37518 3.43238 3.62903 4.28413 4.29823 4.52456 4.70020 4.78765 4.87156 5.10011 5.12091 5.16442 5.32272 5.40305 5.55341 5.69571 5.89140 6.06881 6.12148 6.25296 6.27003 6.33725 6.51319 6.65960 6.80149 7.10483 7.18333 7.44167 8.03773 8.41852 8.66494 8.77801 9.35339 10.87355 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.045302 B = 0.003800 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.931179 B = 7365.989249 C = 7477.120656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.690 5.690 13 C 0.524 3.476 14 O -0.536 6.536 15 C -0.084 4.084 16 H 0.121 0.879 17 C -0.080 4.080 18 C -0.097 4.097 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.088 4.088 23 C -0.085 4.085 24 S -0.096 6.096 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.268 0.732 29 H 0.398 0.602 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -1.175 -21.496 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.338 5.338 13 C 0.306 3.694 14 O -0.414 6.414 15 C -0.216 4.216 16 H 0.139 0.861 17 C -0.117 4.117 18 C -0.102 4.102 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.127 4.127 22 C -0.112 4.112 23 C -0.197 4.197 24 S 0.148 5.852 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.231 0.769 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.328 -0.724 -20.911 20.966 hybrid contribution 0.750 0.543 0.006 0.926 sum 2.078 -0.181 -20.906 21.009 Atomic orbital electron populations 1.22456 0.99060 1.01052 0.99481 1.19173 0.90317 0.94686 0.82435 0.93156 1.21013 1.33490 1.14551 0.88458 0.90101 1.24824 0.95434 0.96717 0.95481 1.69862 1.44777 1.40046 0.98077 0.86879 0.80593 0.83555 0.77508 1.20214 1.22077 1.18638 1.46182 1.64250 1.13897 1.09436 1.19384 0.79229 0.87201 0.83634 1.90676 1.50611 1.15558 1.84522 1.24142 0.97827 1.02969 0.96680 0.86061 1.20866 1.00997 1.01629 0.88247 1.20864 0.95240 0.98856 0.95259 1.20814 0.98907 0.99914 0.91791 1.20951 0.97681 0.99457 0.96122 1.21076 0.94305 0.98548 0.98752 1.20407 1.00234 1.00595 0.89944 1.22223 0.97740 1.02539 0.97240 1.86299 1.17252 1.85716 0.95964 0.93291 0.94405 0.92689 0.92206 0.76850 0.88690 0.86904 0.85809 0.85621 0.85209 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.15 0.33 -3.31 16 2 C 0.24 5.59 2.15 -69.09 -0.15 5.44 16 3 H 0.05 1.30 6.63 -51.93 -0.34 0.96 16 4 C -0.54 -14.33 9.31 -34.44 -0.32 -14.65 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.89 21.59 24.37 -169.99 -4.14 17.45 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 12 N -0.69 -13.49 5.07 -54.94 -0.28 -13.77 16 13 C 0.52 9.75 6.98 -10.99 -0.08 9.67 16 14 O -0.54 -11.80 15.56 5.56 0.09 -11.71 16 15 C -0.08 -1.21 3.82 -27.29 -0.10 -1.32 16 16 H 0.12 1.45 8.12 -51.93 -0.42 1.03 16 17 C -0.08 -1.04 5.83 -27.20 -0.16 -1.20 16 18 C -0.10 -1.20 5.98 -103.79 -0.62 -1.82 16 19 C -0.09 -0.96 9.97 -39.27 -0.39 -1.35 16 20 C -0.12 -1.07 10.00 -39.75 -0.40 -1.47 16 21 C -0.11 -0.95 10.08 -39.63 -0.40 -1.35 16 22 C -0.09 -0.95 10.05 -39.44 -0.40 -1.34 16 23 C -0.08 -1.10 6.48 -39.12 -0.25 -1.36 16 24 S -0.10 -1.40 22.54 -107.50 -2.42 -3.82 16 25 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.40 6.82 8.52 -40.82 -0.35 6.47 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.68 6.99 -51.93 -0.36 1.32 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -31.39 303.56 -8.65 -40.04 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.21 Total: 4.56 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.03 Total: -11.94 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.50 Total: -39.15 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.42 Total: -3.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.39 -8.65 -40.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.909 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds