Wall clock time and date at job start Mon Mar 30 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47130 * 2 1 4 4 C 1.50699 * 109.47281 * 119.99819 * 2 1 3 5 5 H 1.07998 * 120.00303 * 120.00164 * 4 2 1 6 6 C 1.37881 * 120.00117 * 300.00494 * 4 2 1 7 7 N 1.31517 * 120.00307 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99821 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46809 * 90.00246 * 8 6 4 10 10 H 1.48495 * 109.47055 * 210.00084 * 8 6 4 11 11 H 1.48491 * 109.47086 * 330.00332 * 8 6 4 12 12 N 1.46493 * 109.47520 * 240.00147 * 2 1 3 13 13 C 1.34778 * 120.00415 * 84.99816 * 12 2 1 14 14 O 1.21282 * 119.99691 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00325 * 180.02562 * 13 12 2 16 16 H 1.09005 * 110.99847 * 339.15464 * 15 13 12 17 17 C 1.54145 * 111.10146 * 215.00076 * 15 13 12 18 18 C 1.50874 * 110.49426 * 213.70605 * 17 15 13 19 19 C 1.39592 * 126.83205 * 200.54948 * 18 17 15 20 20 C 1.37703 * 121.05853 * 180.41360 * 19 18 17 21 21 C 1.38319 * 120.54222 * 359.97438 * 20 19 18 22 22 C 1.38034 * 119.29253 * 359.86882 * 21 20 19 23 23 C 1.38825 * 120.15790 * 359.97438 * 22 21 20 24 24 S 1.77436 * 130.56934 * 180.62545 * 23 22 21 25 25 H 1.08998 * 109.47552 * 300.00107 * 1 2 3 26 26 H 1.08998 * 109.47419 * 60.00173 * 1 2 3 27 27 H 1.09006 * 109.47130 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99951 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00001 * 265.00592 * 12 2 1 30 30 H 1.08997 * 109.28173 * 93.42550 * 17 15 13 31 31 H 1.09001 * 109.27895 * 333.97769 * 17 15 13 32 32 H 1.08003 * 119.46863 * 0.39735 * 19 18 17 33 33 H 1.08001 * 119.72754 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.35296 * 179.87385 * 21 20 19 35 35 H 1.07993 * 119.91749 * 180.27010 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9954 3.9070 11 1 0.8488 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8581 1.1584 -2.4117 15 6 2.6490 -0.7287 -3.5876 16 1 3.1972 -1.6323 -3.3207 17 6 3.5120 0.2078 -4.4560 18 6 3.3331 -0.1144 -5.9190 19 6 4.2027 0.2137 -6.9606 20 6 3.9160 -0.1344 -8.2617 21 6 2.7543 -0.8207 -8.5661 22 6 1.8828 -1.1573 -7.5499 23 6 2.1736 -0.8092 -6.2378 24 16 1.2742 -1.1091 -4.7380 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9031 -0.5279 4.4375 29 1 2.2490 -1.6318 -1.1526 30 1 4.5607 0.0842 -4.1859 31 1 3.2147 1.2410 -4.2761 32 1 5.1148 0.7493 -6.7425 33 1 4.6043 0.1300 -9.0509 34 1 2.5315 -1.0904 -9.5878 35 1 0.9750 -1.6970 -7.7756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:04 Heat of formation + Delta-G solvation = -27.198590 kcal Electronic energy + Delta-G solvation = -18461.048353 eV Core-core repulsion = 15549.170368 eV Total energy + Delta-G solvation = -2911.877984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.00576 -40.13099 -37.04468 -35.44218 -34.46197 -32.17737 -31.82896 -30.39591 -27.27460 -26.10773 -24.10081 -23.04013 -22.07433 -21.37798 -19.45091 -18.64906 -17.95109 -17.61703 -16.68285 -16.49284 -16.33686 -16.09922 -15.36838 -15.19897 -14.89270 -14.51485 -14.24401 -14.14616 -14.01387 -13.81382 -13.52571 -13.25291 -13.08323 -12.81034 -12.36291 -12.17528 -12.03860 -11.67146 -11.33845 -11.29978 -11.09942 -10.89595 -10.65188 -10.01653 -9.76613 -8.54822 -8.39963 -6.46471 0.00355 0.22869 0.34548 1.04918 1.26966 1.34892 1.44043 1.82305 2.15608 2.24703 2.68455 2.96094 3.25805 3.48720 3.73758 3.89367 3.96911 4.19763 4.40302 4.42409 4.47534 4.51500 4.59175 4.62102 4.65337 4.85278 4.93903 5.02871 5.26431 5.28835 5.36299 5.40049 5.52247 5.53104 5.94686 6.08196 6.53897 6.70069 7.11797 7.27428 8.75122 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.045302 B = 0.003800 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.931179 B = 7365.989249 C = 7477.120656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.243 3.757 3 H 0.028 0.972 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.937 3.063 9 H -0.260 1.260 10 H -0.291 1.291 11 H -0.262 1.262 12 N -0.690 5.690 13 C 0.527 3.473 14 O -0.572 6.572 15 C -0.074 4.074 16 H 0.147 0.853 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.100 4.100 22 C -0.098 4.098 23 C -0.103 4.103 24 S -0.135 6.135 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.271 0.729 29 H 0.409 0.591 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.160 0.840 34 H 0.164 0.836 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.178 -1.071 -24.274 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.046 0.954 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.764 3.236 9 H -0.186 1.186 10 H -0.218 1.218 11 H -0.186 1.186 12 N -0.339 5.339 13 C 0.310 3.690 14 O -0.452 6.452 15 C -0.205 4.205 16 H 0.165 0.835 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.216 4.216 24 S 0.107 5.893 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.181 0.819 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.726 -0.645 -23.725 23.796 hybrid contribution 0.706 0.479 0.711 1.111 sum 2.432 -0.166 -23.014 23.142 Atomic orbital electron populations 1.22361 0.97858 1.01755 0.99521 1.18828 0.91170 0.93369 0.82813 0.95400 1.21217 1.32572 1.13740 0.89756 0.92241 1.25529 0.96739 0.99288 0.95317 1.69964 1.46530 1.41839 0.98686 0.86034 0.79802 0.80418 0.77344 1.18620 1.21788 1.18636 1.46005 1.64538 1.14428 1.08883 1.19954 0.78019 0.86768 0.84238 1.90653 1.52001 1.17329 1.85228 1.24020 0.98041 1.03748 0.94709 0.83519 1.20824 1.01765 0.99818 0.89007 1.20886 0.95941 0.99995 0.95146 1.21139 0.99187 0.99711 0.91874 1.21412 0.97937 0.97886 0.96290 1.21514 0.93522 0.97184 0.99743 1.20719 1.01223 1.00731 0.89495 1.22287 0.97870 1.04423 0.97014 1.86308 1.18627 1.86244 0.98070 0.93788 0.93735 0.91665 0.91955 0.75466 0.86580 0.89242 0.83863 0.82289 0.81891 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.92 8.96 71.98 0.65 -6.28 16 2 C 0.24 11.49 2.15 44.24 0.10 11.59 16 3 H 0.03 1.46 6.63 -2.38 -0.02 1.45 16 4 C -0.53 -28.90 9.31 25.60 0.24 -28.66 16 5 H 0.06 3.40 7.98 -2.91 -0.02 3.37 16 6 C 0.03 1.76 5.45 84.66 0.46 2.22 16 7 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 8 Si 0.94 44.47 24.37 68.60 1.67 46.14 16 9 H -0.26 -11.68 6.87 99.48 0.68 -10.99 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 12 N -0.69 -27.03 5.07 -446.12 -2.26 -29.29 16 13 C 0.53 19.65 6.98 87.66 0.61 20.26 16 14 O -0.57 -25.58 15.56 -3.04 -0.05 -25.63 16 15 C -0.07 -2.09 3.82 30.23 0.12 -1.97 16 16 H 0.15 3.33 8.12 -2.38 -0.02 3.31 16 17 C -0.08 -1.94 5.83 30.29 0.18 -1.76 16 18 C -0.11 -2.67 5.98 -19.33 -0.12 -2.79 16 19 C -0.10 -1.74 9.97 22.47 0.22 -1.51 16 20 C -0.12 -1.55 10.00 22.16 0.22 -1.33 16 21 C -0.10 -1.39 10.08 22.24 0.22 -1.17 16 22 C -0.10 -1.90 10.05 22.36 0.22 -1.68 16 23 C -0.10 -2.58 6.48 22.57 0.15 -2.43 16 24 S -0.14 -3.93 22.54 -56.49 -1.27 -5.20 16 25 H 0.04 1.97 3.27 -2.39 -0.01 1.96 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.41 14.00 8.52 -92.70 -0.79 13.21 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.70 6.99 -2.39 -0.02 2.68 16 32 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -68.56 303.56 1.90 -66.65 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.24 Total: 17.95 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 3.27 Total: -15.51 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.96 Total: -84.42 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.67 Total: 46.14 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.27 Total: -5.20 kcal Total: -68.56 1.90 -66.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.455 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds