Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47132 * 2 1 4 4 C 1.37104 * 120.00019 * 89.43507 * 3 2 1 5 5 H 1.07993 * 119.99613 * 166.14184 * 4 3 2 6 6 C 1.38941 * 119.99774 * 346.14747 * 4 3 2 7 7 N 1.31410 * 120.00606 * 1.53005 * 6 4 3 8 8 Si 1.86806 * 119.99779 * 181.53612 * 6 4 3 9 9 H 1.48499 * 109.47116 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47272 * 119.99778 * 8 6 4 11 11 H 1.48497 * 109.46853 * 239.99777 * 8 6 4 12 12 C 1.34778 * 120.00199 * 269.43766 * 3 2 1 13 13 O 1.21286 * 120.00311 * 185.83063 * 12 3 2 14 14 C 1.50701 * 119.99883 * 5.83047 * 12 3 2 15 15 H 1.09004 * 110.96408 * 20.99370 * 14 12 3 16 16 C 1.54133 * 111.09832 * 145.11287 * 14 12 3 17 17 C 1.50869 * 110.53705 * 89.83953 * 16 14 12 18 18 C 1.39605 * 126.82406 * 199.98914 * 17 16 14 19 19 C 1.37696 * 121.06367 * 180.02562 * 18 17 16 20 20 C 1.38323 * 120.54102 * 0.48116 * 19 18 17 21 21 C 1.38031 * 119.29076 * 359.65726 * 20 19 18 22 22 C 1.38820 * 120.16010 * 0.02562 * 21 20 19 23 23 S 1.77435 * 130.57217 * 180.26655 * 22 21 20 24 24 H 1.08997 * 109.46757 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47202 * 299.99803 * 1 2 3 27 27 H 1.09003 * 109.47504 * 240.00441 * 2 1 3 28 28 H 1.08999 * 109.47423 * 119.99664 * 2 1 3 29 29 H 0.96995 * 120.00483 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.27458 * 329.55162 * 16 14 12 31 31 H 1.09002 * 109.27460 * 210.13051 * 16 14 12 32 32 H 1.08004 * 119.46738 * 0.22518 * 18 17 16 33 33 H 1.07999 * 119.73392 * 180.23892 * 19 18 17 34 34 H 1.07997 * 120.35826 * 179.68075 * 20 19 18 35 35 H 1.07996 * 119.91941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2358 2.0315 1.1873 5 1 2.7990 2.9528 1.2030 6 6 1.7317 1.5049 2.3701 7 7 1.0723 0.3684 2.3551 8 14 1.9911 2.4129 3.9819 9 1 2.7592 3.6587 3.7302 10 1 0.6734 2.7547 4.5753 11 1 2.7475 1.5469 4.9217 12 6 2.2538 2.0128 -1.1671 13 8 2.7571 3.1163 -1.1688 14 6 1.8916 1.3479 -2.4701 15 1 1.1428 0.5707 -2.3165 16 6 1.4122 2.3829 -3.5068 17 6 2.5767 2.9036 -4.3123 18 6 2.6216 4.0892 -5.0480 19 6 3.7532 4.4510 -5.7442 20 6 4.8724 3.6382 -5.7375 21 6 4.8474 2.4603 -5.0183 22 6 3.7087 2.0990 -4.3112 23 16 3.3784 0.6753 -3.3051 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.7201 0.0010 3.1808 30 1 0.9320 3.2138 -2.9900 31 1 0.6922 1.9136 -4.1772 32 1 1.7559 4.7347 -5.0689 33 1 3.7657 5.3750 -6.3032 34 1 5.7566 3.9223 -6.2887 35 1 5.7157 1.8183 -5.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = 12.516135 kcal Electronic energy + Delta-G solvation = -19302.418990 eV Core-core repulsion = 16392.263165 eV Total energy + Delta-G solvation = -2910.155825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.31651 -38.44899 -35.35430 -33.87932 -31.81058 -30.65612 -29.63409 -29.16258 -25.59356 -23.87296 -22.69029 -22.08645 -21.08364 -18.95716 -17.49256 -17.04472 -16.51672 -15.31564 -15.25337 -14.68722 -14.67728 -14.00282 -13.69489 -13.55773 -13.10809 -12.87814 -12.66603 -12.60138 -12.05398 -11.77941 -11.67427 -11.23665 -11.18381 -11.08464 -10.82510 -10.76369 -10.33756 -10.16551 -10.05495 -9.91941 -9.40812 -8.93901 -8.64133 -8.52482 -7.77981 -7.05859 -6.27590 -3.90532 1.37221 1.51849 1.85293 2.49349 3.12854 3.21888 3.28968 3.85591 3.96733 4.07836 4.59888 4.77890 4.94788 5.07740 5.11840 5.19120 5.40174 5.49932 5.60668 5.72231 5.83491 5.93357 6.05832 6.17097 6.20736 6.48581 6.52614 6.54068 6.63885 6.65153 6.76122 7.06983 7.32362 7.51761 7.69325 8.02364 8.46035 9.10700 9.35224 9.89227 10.60257 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.005302 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.983185 B = 5279.530894 C = 5658.720739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.115 3.885 3 N -0.431 5.431 4 C -0.287 4.287 5 H 0.104 0.896 6 C 0.023 3.977 7 N -0.877 5.877 8 Si 0.932 3.068 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.452 3.548 13 O -0.579 6.579 14 C -0.067 4.067 15 H 0.129 0.871 16 C -0.068 4.068 17 C -0.077 4.077 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.071 4.071 23 S -0.137 6.137 24 H 0.016 0.984 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.024 0.976 28 H 0.123 0.877 29 H 0.266 0.734 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 0.484 -11.662 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.009 4.009 3 N -0.149 5.149 4 C -0.416 4.416 5 H 0.122 0.878 6 C -0.178 4.178 7 N -0.519 5.519 8 Si 0.759 3.241 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.238 3.762 13 O -0.464 6.464 14 C -0.198 4.198 15 H 0.147 0.853 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.116 4.116 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.184 4.184 23 S 0.107 5.893 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.141 0.859 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.003 -0.348 -11.289 11.338 hybrid contribution -0.584 1.319 0.691 1.600 sum 0.419 0.971 -10.598 10.651 Atomic orbital electron populations 1.22205 0.96712 0.99834 1.01325 1.21781 0.94559 0.83313 1.01200 1.43795 1.55165 1.11560 1.04410 1.19899 1.31280 1.07518 0.82880 0.87816 1.25322 0.96055 0.96590 0.99840 1.70065 1.36260 1.18061 1.27533 0.85744 0.78107 0.79442 0.80780 1.19291 1.20635 1.20669 1.19277 0.86468 0.86663 0.83827 1.90543 1.48501 1.21053 1.86326 1.24354 0.97363 1.00865 0.97252 0.85288 1.20711 0.96203 0.98673 0.95041 1.20791 0.94163 0.95564 0.97774 1.20752 0.98608 0.95093 0.97108 1.20858 0.93394 0.99832 1.00402 1.20979 0.98402 0.94297 0.99540 1.20361 0.95880 0.97262 0.97954 1.22076 0.96865 0.98181 1.01236 1.85895 1.38022 1.18332 1.47056 0.96472 0.94294 0.89068 0.95748 0.85928 0.92310 0.88623 0.89089 0.86223 0.85998 0.85589 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.37 37.16 0.35 -2.58 16 2 C 0.11 2.57 4.92 -4.04 -0.02 2.55 16 3 N -0.43 -10.92 2.62 -114.81 -0.30 -11.22 16 4 C -0.29 -7.80 9.50 -14.93 -0.14 -7.95 16 5 H 0.10 3.00 7.23 -52.49 -0.38 2.62 16 6 C 0.02 0.58 5.39 -17.47 -0.09 0.49 16 7 N -0.88 -21.62 7.40 55.50 0.41 -21.21 16 8 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 9 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.45 11.09 6.68 -10.98 -0.07 11.01 16 13 O -0.58 -16.18 15.95 5.55 0.09 -16.09 16 14 C -0.07 -1.31 2.92 -27.29 -0.08 -1.39 16 15 H 0.13 2.31 5.42 -51.93 -0.28 2.03 16 16 C -0.07 -1.17 5.49 -27.21 -0.15 -1.32 16 17 C -0.08 -1.35 5.84 -103.79 -0.61 -1.96 16 18 C -0.10 -1.43 9.97 -39.27 -0.39 -1.82 16 19 C -0.12 -1.64 10.00 -39.75 -0.40 -2.03 16 20 C -0.11 -1.48 10.08 -39.63 -0.40 -1.88 16 21 C -0.09 -1.40 10.05 -39.44 -0.40 -1.80 16 22 C -0.07 -1.28 6.48 -39.13 -0.25 -1.53 16 23 S -0.14 -2.57 22.54 -107.50 -2.42 -5.00 16 24 H 0.02 0.32 7.20 -51.93 -0.37 -0.06 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 2.12 6.16 -51.93 -0.32 1.80 16 27 H 0.02 0.50 6.62 -51.93 -0.34 0.15 16 28 H 0.12 2.99 5.81 -51.93 -0.30 2.69 16 29 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.10 1.72 7.79 -51.93 -0.40 1.31 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 299.14 15.07 4.51 4.51 Total: -1.00 -29.79 299.14 -9.47 -39.26 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.08 Total: 4.72 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.65 Total: -10.22 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.11 Total: -32.43 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.42 Total: -5.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.79 -9.47 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.774 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds