Wall clock time and date at job start Mon Mar 30 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47132 * 2 1 4 4 C 1.37104 * 120.00019 * 89.43507 * 3 2 1 5 5 H 1.07993 * 119.99613 * 166.14184 * 4 3 2 6 6 C 1.38941 * 119.99774 * 346.14747 * 4 3 2 7 7 N 1.31410 * 120.00606 * 1.53005 * 6 4 3 8 8 Si 1.86806 * 119.99779 * 181.53612 * 6 4 3 9 9 H 1.48499 * 109.47116 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47272 * 119.99778 * 8 6 4 11 11 H 1.48497 * 109.46853 * 239.99777 * 8 6 4 12 12 C 1.34778 * 120.00199 * 269.43766 * 3 2 1 13 13 O 1.21286 * 120.00311 * 185.83063 * 12 3 2 14 14 C 1.50701 * 119.99883 * 5.83047 * 12 3 2 15 15 H 1.09004 * 110.96408 * 20.99370 * 14 12 3 16 16 C 1.54133 * 111.09832 * 145.11287 * 14 12 3 17 17 C 1.50869 * 110.53705 * 89.83953 * 16 14 12 18 18 C 1.39605 * 126.82406 * 199.98914 * 17 16 14 19 19 C 1.37696 * 121.06367 * 180.02562 * 18 17 16 20 20 C 1.38323 * 120.54102 * 0.48116 * 19 18 17 21 21 C 1.38031 * 119.29076 * 359.65726 * 20 19 18 22 22 C 1.38820 * 120.16010 * 0.02562 * 21 20 19 23 23 S 1.77435 * 130.57217 * 180.26655 * 22 21 20 24 24 H 1.08997 * 109.46757 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47202 * 299.99803 * 1 2 3 27 27 H 1.09003 * 109.47504 * 240.00441 * 2 1 3 28 28 H 1.08999 * 109.47423 * 119.99664 * 2 1 3 29 29 H 0.96995 * 120.00483 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.27458 * 329.55162 * 16 14 12 31 31 H 1.09002 * 109.27460 * 210.13051 * 16 14 12 32 32 H 1.08004 * 119.46738 * 0.22518 * 18 17 16 33 33 H 1.07999 * 119.73392 * 180.23892 * 19 18 17 34 34 H 1.07997 * 120.35826 * 179.68075 * 20 19 18 35 35 H 1.07996 * 119.91941 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2358 2.0315 1.1873 5 1 2.7990 2.9528 1.2030 6 6 1.7317 1.5049 2.3701 7 7 1.0723 0.3684 2.3551 8 14 1.9911 2.4129 3.9819 9 1 2.7592 3.6587 3.7302 10 1 0.6734 2.7547 4.5753 11 1 2.7475 1.5469 4.9217 12 6 2.2538 2.0128 -1.1671 13 8 2.7571 3.1163 -1.1688 14 6 1.8916 1.3479 -2.4701 15 1 1.1428 0.5707 -2.3165 16 6 1.4122 2.3829 -3.5068 17 6 2.5767 2.9036 -4.3123 18 6 2.6216 4.0892 -5.0480 19 6 3.7532 4.4510 -5.7442 20 6 4.8724 3.6382 -5.7375 21 6 4.8474 2.4603 -5.0183 22 6 3.7087 2.0990 -4.3112 23 16 3.3784 0.6753 -3.3051 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.7201 0.0010 3.1808 30 1 0.9320 3.2138 -2.9900 31 1 0.6922 1.9136 -4.1772 32 1 1.7559 4.7347 -5.0689 33 1 3.7657 5.3750 -6.3032 34 1 5.7566 3.9223 -6.2887 35 1 5.7157 1.8183 -5.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:06 Heat of formation + Delta-G solvation = -3.072761 kcal Electronic energy + Delta-G solvation = -19303.094975 eV Core-core repulsion = 16392.263165 eV Total energy + Delta-G solvation = -2910.831810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84642 -39.94551 -37.22457 -35.30385 -33.73209 -31.78606 -31.36456 -30.59915 -27.33827 -25.44010 -24.00205 -23.73546 -22.33503 -20.68950 -18.96844 -18.72242 -18.36399 -16.80756 -16.52175 -16.29436 -16.07520 -15.71140 -15.23002 -15.09391 -14.68451 -14.39303 -14.21210 -13.91072 -13.58038 -13.39516 -13.13985 -12.90897 -12.81257 -12.62145 -12.42039 -12.14793 -12.00435 -11.99374 -11.82303 -11.34329 -10.84088 -10.72473 -10.44366 -9.71802 -9.70025 -8.49034 -8.19397 -5.93379 0.12069 0.36884 0.48726 1.09800 1.38648 1.41876 1.54232 2.15496 2.25375 2.72307 2.88030 3.11489 3.43327 3.62330 3.78570 3.98996 4.11669 4.20386 4.42846 4.46944 4.53498 4.58850 4.65000 4.86540 4.88225 4.90597 5.06052 5.13818 5.34175 5.37744 5.42079 5.53372 5.58158 5.91229 5.99743 6.06086 6.51329 7.13835 7.43026 7.97133 8.64429 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.005302 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.983185 B = 5279.530894 C = 5658.720739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.117 3.883 3 N -0.443 5.443 4 C -0.333 4.333 5 H 0.071 0.929 6 C 0.000 4.000 7 N -0.875 5.875 8 Si 0.991 3.009 9 H -0.281 1.281 10 H -0.269 1.269 11 H -0.269 1.269 12 C 0.443 3.557 13 O -0.625 6.625 14 C -0.061 4.061 15 H 0.145 0.855 16 C -0.066 4.066 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.104 4.104 22 C -0.103 4.103 23 S -0.152 6.152 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.273 0.727 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.139 0.861 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 0.686 -13.035 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.005 4.005 3 N -0.160 5.160 4 C -0.462 4.462 5 H 0.089 0.911 6 C -0.201 4.201 7 N -0.515 5.515 8 Si 0.815 3.185 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.194 1.194 12 C 0.230 3.770 13 O -0.513 6.513 14 C -0.192 4.192 15 H 0.163 0.837 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.215 4.215 23 S 0.091 5.909 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.762 -0.187 -12.667 12.691 hybrid contribution -0.442 1.294 1.048 1.723 sum 0.320 1.107 -11.619 11.676 Atomic orbital electron populations 1.22035 0.95122 1.01248 1.00596 1.21779 0.95806 0.81876 1.01088 1.44004 1.55244 1.12501 1.04293 1.19719 1.33849 1.07789 0.84803 0.91069 1.25942 0.95204 0.97188 1.01803 1.70158 1.34973 1.17885 1.28516 0.84904 0.78277 0.77944 0.77359 1.20658 1.19447 1.19417 1.20066 0.85369 0.86376 0.85200 1.90489 1.50305 1.23139 1.87328 1.24204 0.98068 1.01737 0.95212 0.83744 1.20751 0.96991 0.97789 0.94837 1.20999 0.94085 0.96815 0.98903 1.21126 1.00270 0.94457 0.96893 1.21373 0.92366 1.00812 0.99144 1.21470 0.99764 0.92903 0.98428 1.20730 0.95532 0.98507 0.97982 1.22281 0.98385 0.98160 1.02716 1.85761 1.38270 1.19448 1.47448 0.95080 0.91680 0.91823 0.93806 0.87996 0.91628 0.90046 0.85732 0.84312 0.82208 0.81775 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.37 71.98 0.67 -4.63 16 2 C 0.12 5.26 4.92 86.38 0.43 5.68 16 3 N -0.44 -23.12 2.62 -635.54 -1.67 -24.79 16 4 C -0.33 -18.88 9.50 84.04 0.80 -18.09 16 5 H 0.07 4.40 7.23 -2.91 -0.02 4.38 16 6 C 0.00 0.00 5.39 84.92 0.46 0.46 16 7 N -0.88 -43.10 7.40 21.66 0.16 -42.94 16 8 Si 0.99 41.95 29.55 68.60 2.03 43.97 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 12 C 0.44 22.42 6.68 87.66 0.59 23.01 16 13 O -0.62 -36.50 15.95 -3.05 -0.05 -36.55 16 14 C -0.06 -2.40 2.92 30.23 0.09 -2.31 16 15 H 0.14 5.07 5.42 -2.38 -0.01 5.06 16 16 C -0.07 -2.23 5.49 30.28 0.17 -2.07 16 17 C -0.10 -3.52 5.84 -19.32 -0.11 -3.63 16 18 C -0.11 -3.01 9.97 22.47 0.22 -2.79 16 19 C -0.12 -2.68 10.00 22.16 0.22 -2.46 16 20 C -0.11 -2.45 10.08 22.24 0.22 -2.23 16 21 C -0.10 -3.06 10.05 22.36 0.22 -2.84 16 22 C -0.10 -3.67 6.48 22.56 0.15 -3.52 16 23 S -0.15 -5.74 22.54 -56.49 -1.27 -7.02 16 24 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 2.93 6.16 -2.39 -0.01 2.92 16 27 H 0.04 1.77 6.62 -2.39 -0.02 1.76 16 28 H 0.10 5.02 5.81 -2.39 -0.01 5.00 16 29 H 0.27 12.55 8.31 -92.71 -0.77 11.78 16 30 H 0.08 2.96 7.79 -2.39 -0.02 2.94 16 31 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -67.29 299.14 4.42 -62.86 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 1.10 Total: 19.87 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.12 Total: -15.41 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.51 Total: -67.73 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.05 Total: -36.55 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.27 Total: -7.02 kcal Total: -67.29 4.42 -62.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.788 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds