Wall clock time and date at job start Mon Mar 30 2020 01:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86802 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47026 * 265.10859 * 3 2 1 5 5 H 1.48502 * 109.47340 * 25.10971 * 3 2 1 6 6 H 1.48502 * 109.47116 * 145.11010 * 3 2 1 7 7 C 1.38890 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 343.77543 * 7 2 1 9 9 N 1.37136 * 119.99875 * 163.77933 * 7 2 1 10 10 C 1.34771 * 120.00028 * 148.41454 * 9 7 2 11 11 O 1.21283 * 120.00365 * 185.31934 * 10 9 7 12 12 C 1.50708 * 120.00194 * 5.31704 * 10 9 7 13 13 H 1.09002 * 110.75651 * 29.29499 * 12 10 9 14 14 C 1.55127 * 110.85771 * 152.79567 * 12 10 9 15 15 C 1.54044 * 106.80586 * 160.10663 * 14 12 10 16 16 C 1.54274 * 109.08881 * 313.05393 * 15 14 12 17 17 S 1.83098 * 104.64584 * 27.82104 * 16 15 14 18 18 C 1.39788 * 120.00007 * 328.40905 * 9 7 2 19 19 C 1.38959 * 120.07846 * 303.84868 * 18 9 7 20 20 C 1.38081 * 119.92417 * 180.25517 * 19 18 9 21 21 C 1.38312 * 120.07310 * 359.45007 * 20 19 18 22 22 C 1.38309 * 120.15625 * 0.55120 * 21 20 19 23 23 C 1.38084 * 120.07898 * 359.72390 * 22 21 20 24 24 H 0.96999 * 119.99745 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.97602 * 279.65700 * 14 12 10 26 26 H 1.09005 * 109.97952 * 40.93494 * 14 12 10 27 27 H 1.09001 * 109.63514 * 193.02377 * 15 14 12 28 28 H 1.09002 * 109.42297 * 72.96071 * 15 14 12 29 29 H 1.09000 * 110.40010 * 269.03648 * 16 15 14 30 30 H 1.08989 * 110.40299 * 146.61868 * 16 15 14 31 31 H 1.08001 * 120.03989 * 359.97438 * 19 18 9 32 32 H 1.07997 * 119.96326 * 179.69674 * 20 19 18 33 33 H 1.08005 * 119.91994 * 180.25637 * 21 20 19 34 34 H 1.08007 * 119.95772 * 179.70481 * 22 21 20 35 35 H 1.07995 * 120.03442 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.5991 1.9867 -1.3950 5 1 1.3979 2.6804 0.5941 6 1 3.4903 1.4722 0.8009 7 6 2.0087 -1.2028 0.0005 8 1 1.5009 -2.1194 0.2623 9 7 3.3391 -1.2266 -0.3312 10 6 4.1579 -2.1369 0.2320 11 8 5.3503 -2.0975 0.0135 12 6 3.5920 -3.2038 1.1335 13 1 2.5683 -3.4470 0.8488 14 6 4.4858 -4.4716 1.1175 15 6 4.1472 -5.2714 2.3898 16 6 4.1283 -4.3126 3.5983 17 16 3.6755 -2.6855 2.8913 18 6 3.8460 -0.3066 -1.2537 19 6 3.2917 -0.2175 -2.5248 20 6 3.7983 0.6886 -3.4352 21 6 4.8488 1.5149 -3.0794 22 6 5.4030 1.4290 -1.8151 23 6 4.9051 0.5212 -0.9015 24 1 -0.4850 0.8401 -0.0004 25 1 4.2710 -5.0675 0.2305 26 1 5.5377 -4.1859 1.1287 27 1 4.8996 -6.0441 2.5477 28 1 3.1678 -5.7359 2.2759 29 1 5.1141 -4.2648 4.0608 30 1 3.3816 -4.6322 4.3251 31 1 2.4685 -0.8595 -2.8018 32 1 3.3711 0.7550 -4.4249 33 1 5.2404 2.2257 -3.7921 34 1 6.2263 2.0725 -1.5422 35 1 5.3386 0.4544 0.0854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074725310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:00 Heat of formation + Delta-G solvation = -11.406045 kcal Electronic energy + Delta-G solvation = -19669.946044 eV Core-core repulsion = 16758.752876 eV Total energy + Delta-G solvation = -2911.193168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67073 -39.48031 -36.99581 -36.47964 -34.10883 -31.89510 -31.71129 -30.10585 -27.15482 -26.27839 -23.78840 -23.46035 -21.90429 -20.98576 -19.79471 -18.52883 -17.82246 -17.50859 -17.07436 -16.44480 -16.28400 -15.58980 -15.40400 -15.02140 -14.92030 -14.74230 -14.40174 -14.31833 -14.00448 -13.69715 -13.21057 -12.97638 -12.58572 -12.57178 -12.45793 -12.36812 -12.17376 -11.90721 -11.69118 -11.27784 -10.89673 -10.83785 -10.40767 -9.82326 -9.32681 -8.70958 -8.58569 -6.22447 0.20272 0.45699 0.59297 1.23764 1.28985 1.37640 1.43805 2.00881 2.16973 2.35226 2.77050 3.04018 3.57283 3.75187 3.87610 4.00524 4.06358 4.11911 4.20499 4.25869 4.29448 4.53727 4.63829 4.68803 4.70851 4.74364 4.89746 4.95096 5.08835 5.19157 5.32416 5.49239 5.55181 5.57360 5.90364 5.97303 6.26148 6.78970 7.20632 7.54133 8.51757 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.007586 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.086530 B = 3689.977977 C = 4334.317665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.049 3.951 3 Si 0.905 3.095 4 H -0.237 1.237 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.343 4.343 8 H 0.099 0.901 9 N -0.426 5.426 10 C 0.497 3.503 11 O -0.586 6.586 12 C -0.040 4.040 13 H 0.110 0.890 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.064 4.064 17 S -0.320 6.320 18 C 0.116 3.884 19 C -0.133 4.133 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.141 4.141 24 H 0.280 0.720 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -4.835 -0.997 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.160 1.160 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.116 0.884 9 N -0.141 5.141 10 C 0.286 3.714 11 O -0.470 6.470 12 C -0.171 4.171 13 H 0.128 0.872 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.211 4.211 17 S -0.095 6.095 18 C 0.025 3.975 19 C -0.153 4.153 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.162 4.162 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.174 0.826 33 H 0.182 0.818 34 H 0.168 0.832 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.505 -3.709 -0.536 8.389 hybrid contribution -0.136 -0.125 -0.098 0.209 sum 7.370 -3.834 -0.634 8.331 Atomic orbital electron populations 1.69739 1.06943 1.29067 1.46800 1.25556 0.95496 1.00334 0.94308 0.86458 0.78448 0.80710 0.81307 1.16029 1.22446 1.20061 1.18999 0.82729 0.96200 1.48960 0.88385 1.41548 1.08860 1.28494 1.35181 1.20254 0.85581 0.84609 0.80954 1.90539 1.15668 1.76597 1.64212 1.23847 1.04033 0.96772 0.92455 0.87237 1.22628 0.99493 0.92335 1.00649 1.22305 1.05009 0.98002 0.90122 1.24212 1.05990 0.90342 1.00594 1.88057 1.92581 1.22719 1.06106 1.18079 0.96027 0.93028 0.90412 1.21263 1.01207 1.01054 0.91770 1.21383 0.96699 0.94861 0.99883 1.21519 0.96511 1.00060 0.96497 1.21321 1.00554 0.98009 0.93860 1.21175 0.98199 0.96795 1.00010 0.91019 0.88531 0.90648 0.86538 0.89377 0.87699 0.86519 0.86302 0.82554 0.81849 0.83231 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.43 13.96 21.65 0.30 -50.13 16 2 C 0.05 2.67 5.23 84.91 0.44 3.12 16 3 Si 0.90 44.89 23.50 68.60 1.61 46.51 16 4 H -0.24 -10.93 5.64 99.48 0.56 -10.37 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.28 -14.30 6.06 99.48 0.60 -13.70 16 7 C -0.34 -18.45 9.05 84.02 0.76 -17.69 16 8 H 0.10 5.47 6.33 -2.91 -0.02 5.45 16 9 N -0.43 -21.55 2.48 -458.90 -1.14 -22.69 16 10 C 0.50 23.92 6.72 87.66 0.59 24.51 16 11 O -0.59 -29.86 14.86 -3.04 -0.05 -29.91 16 12 C -0.04 -1.61 2.94 30.58 0.09 -1.52 16 13 H 0.11 4.51 6.28 -2.39 -0.01 4.50 16 14 C -0.11 -3.38 5.77 31.68 0.18 -3.20 16 15 C -0.12 -2.50 6.38 31.38 0.20 -2.30 16 16 C -0.06 -1.56 7.34 72.41 0.53 -1.02 16 17 S -0.32 -12.48 22.71 -56.49 -1.28 -13.77 16 18 C 0.12 5.52 2.53 38.22 0.10 5.62 16 19 C -0.13 -5.63 7.98 22.41 0.18 -5.45 16 20 C -0.11 -3.67 9.50 22.25 0.21 -3.46 16 21 C -0.13 -3.89 9.88 22.30 0.22 -3.67 16 22 C -0.12 -4.19 9.91 22.25 0.22 -3.97 16 23 C -0.14 -6.33 5.71 22.41 0.13 -6.21 16 24 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.07 2.52 7.33 -2.38 -0.02 2.50 16 27 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 31 H 0.12 5.14 8.05 -2.91 -0.02 5.11 16 32 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.10 4.67 7.64 -2.91 -0.02 4.64 16 Total: -1.00 -68.88 294.07 4.14 -64.75 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.84 Total: 20.48 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 3.85 Total: -15.24 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -0.84 Total: -72.82 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.61 Total: 46.51 kcal Atomic # 16 Polarization: -12.48 SS G_CDS: -1.28 Total: -13.77 kcal Total: -68.88 4.14 -64.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074725310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.342 kcal (2) G-P(sol) polarization free energy of solvation -68.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds