Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47594 * 2 1 4 4 C 1.37097 * 119.99782 * 273.20553 * 3 2 1 5 5 H 1.07996 * 119.99944 * 180.02562 * 4 3 2 6 6 C 1.38955 * 119.99801 * 0.02779 * 4 3 2 7 7 N 1.31407 * 120.00293 * 27.21890 * 6 4 3 8 8 Si 1.86801 * 119.99665 * 207.21295 * 6 4 3 9 9 H 1.48498 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46815 * 120.00385 * 8 6 4 11 11 H 1.48500 * 109.47406 * 239.99947 * 8 6 4 12 12 C 1.34771 * 120.00190 * 93.20017 * 3 2 1 13 13 O 1.21294 * 120.00176 * 5.36155 * 12 3 2 14 14 C 1.50702 * 119.99895 * 185.35969 * 12 3 2 15 15 H 1.09003 * 109.20088 * 28.40809 * 14 12 3 16 16 C 1.54136 * 109.28043 * 268.91494 * 14 12 3 17 17 S 1.83301 * 101.11906 * 268.01773 * 16 14 12 18 18 C 1.77516 * 96.57957 * 335.20560 * 17 16 14 19 19 C 1.38824 * 130.55610 * 195.47489 * 18 17 16 20 20 C 1.38022 * 120.16601 * 179.31973 * 19 18 17 21 21 C 1.38328 * 119.28861 * 359.97438 * 20 19 18 22 22 C 1.37704 * 120.54278 * 0.16084 * 21 20 19 23 23 C 1.38887 * 108.29965 * 15.12791 * 18 17 16 24 24 H 1.09002 * 109.47724 * 172.75008 * 1 2 3 25 25 H 1.09000 * 109.47390 * 292.75871 * 1 2 3 26 26 H 1.09004 * 109.47211 * 52.75305 * 1 2 3 27 27 H 1.08998 * 109.47440 * 239.99556 * 2 1 3 28 28 H 1.09008 * 109.46836 * 119.99739 * 2 1 3 29 29 H 0.96993 * 120.00177 * 180.02562 * 7 6 4 30 30 H 1.09002 * 111.10181 * 25.99160 * 16 14 12 31 31 H 1.09003 * 111.10330 * 150.04608 * 16 14 12 32 32 H 1.08005 * 119.91814 * 359.30589 * 19 18 17 33 33 H 1.07997 * 120.36112 * 180.02562 * 20 19 18 34 34 H 1.07997 * 119.72538 * 180.15691 * 21 20 19 35 35 H 1.08000 * 119.46764 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1843 2.0495 -1.1855 5 1 2.5448 3.0676 -1.1855 6 6 1.8887 1.4170 -2.3869 7 7 0.9932 0.4559 -2.4205 8 14 2.7640 1.9333 -3.9542 9 1 3.7192 3.0289 -3.6499 10 1 3.5038 0.7732 -4.5131 11 1 1.7655 2.4077 -4.9457 12 6 2.3045 1.9948 1.1653 13 8 2.2512 1.3746 2.2064 14 6 2.6907 3.4514 1.1749 15 1 2.2236 3.9517 0.3266 16 6 4.2227 3.5726 1.0568 17 16 4.7113 3.6129 2.8231 18 6 3.1693 4.2334 3.4465 19 6 2.8531 4.7940 4.6765 20 6 1.5666 5.2235 4.9327 21 6 0.6004 5.0892 3.9520 22 6 0.9135 4.5305 2.7330 23 6 2.2075 4.0865 2.4554 24 1 -0.3634 -1.0194 -0.1297 25 1 -0.3634 0.3975 0.9476 26 1 -0.3634 0.6220 -0.8181 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 0.7871 0.0141 -3.2591 30 1 4.6473 2.7047 0.5520 31 1 4.5056 4.4954 0.5503 32 1 3.6155 4.8942 5.4349 33 1 1.3172 5.6605 5.8883 34 1 -0.4079 5.4252 4.1441 35 1 0.1454 4.4337 1.9799 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = 11.888715 kcal Electronic energy + Delta-G solvation = -19594.801208 eV Core-core repulsion = 16684.618177 eV Total energy + Delta-G solvation = -2910.183032 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58579 -38.15651 -35.22728 -33.82273 -31.62626 -30.57683 -30.00446 -28.83195 -25.04824 -24.46490 -22.54601 -22.28303 -20.69127 -19.12179 -17.54868 -16.89496 -16.35686 -15.14276 -15.07808 -14.66471 -14.49749 -14.21956 -13.74624 -13.57642 -13.16278 -12.67740 -12.48304 -12.29100 -12.09731 -11.98752 -11.66004 -11.37659 -11.21923 -11.01775 -10.82820 -10.59548 -10.43763 -10.38933 -9.81887 -9.71840 -9.34007 -8.93649 -8.72655 -8.26588 -7.92227 -6.97099 -6.50127 -3.93124 1.49105 1.61809 1.97294 2.62050 3.01363 3.15495 3.17607 3.73673 3.90428 4.01284 4.63794 4.83837 4.88345 5.14700 5.16431 5.34098 5.48630 5.58777 5.73181 5.86065 6.00148 6.11858 6.15045 6.25654 6.52996 6.56314 6.63407 6.74512 6.75644 6.81210 7.00699 7.15293 7.24570 7.35824 7.62527 7.76565 8.33243 8.97091 9.44771 9.85969 10.46430 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.006262 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.720652 B = 4470.106553 C = 4895.315504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.133 3.867 3 N -0.436 5.436 4 C -0.346 4.346 5 H 0.102 0.898 6 C 0.042 3.958 7 N -0.846 5.846 8 Si 0.910 3.090 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.282 1.282 12 C 0.460 3.540 13 O -0.591 6.591 14 C -0.068 4.068 15 H 0.113 0.887 16 C -0.062 4.062 17 S -0.153 6.153 18 C -0.062 4.062 19 C -0.096 4.096 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.064 4.064 24 H 0.035 0.965 25 H 0.018 0.982 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 7.622 4.978 9.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 N -0.154 5.154 4 C -0.473 4.473 5 H 0.119 0.881 6 C -0.164 4.164 7 N -0.483 5.483 8 Si 0.736 3.264 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.247 3.753 13 O -0.476 6.476 14 C -0.090 4.090 15 H 0.131 0.869 16 C -0.211 4.211 17 S 0.090 5.910 18 C -0.175 4.175 19 C -0.120 4.120 20 C -0.131 4.131 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.070 4.070 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.617 6.765 5.789 9.280 hybrid contribution -0.944 0.453 -1.593 1.907 sum 1.672 7.218 4.195 8.515 Atomic orbital electron populations 1.21973 0.96616 1.00453 1.00297 1.21268 0.94465 0.82836 1.00378 1.43856 1.54991 1.11891 1.04673 1.19675 1.45234 0.99667 0.82747 0.88070 1.25164 0.95243 0.96638 0.99314 1.70277 1.25784 1.24873 1.27356 0.86155 0.79855 0.78874 0.81529 1.19171 1.20415 1.20811 1.19333 0.84660 0.87274 0.83990 1.90570 1.59019 1.66143 1.31883 1.20542 0.94512 0.97465 0.96513 0.86912 1.24187 0.96233 1.06679 0.93955 1.85694 1.16327 1.82235 1.06787 1.22000 0.96505 1.01600 0.97400 1.20300 0.97024 0.99780 0.94852 1.20961 0.92613 1.00476 0.99021 1.20855 0.99328 1.00931 0.93440 1.20815 0.94900 0.97651 0.97402 1.20495 0.94205 0.97794 0.94495 0.94593 0.96312 0.89281 0.89120 0.93907 0.92079 0.86365 0.88246 0.86030 0.85646 0.85993 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.46 37.15 0.35 -2.77 16 2 C 0.13 3.24 5.46 -4.05 -0.02 3.22 16 3 N -0.44 -10.66 2.63 -114.81 -0.30 -10.96 16 4 C -0.35 -8.22 9.15 -14.93 -0.14 -8.35 16 5 H 0.10 2.24 5.96 -52.49 -0.31 1.93 16 6 C 0.04 0.99 4.98 -17.47 -0.09 0.91 16 7 N -0.85 -20.40 8.18 55.50 0.45 -19.95 16 8 Si 0.91 18.25 29.63 -169.99 -5.04 13.21 16 9 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.46 11.00 6.45 -10.99 -0.07 10.93 16 13 O -0.59 -15.89 15.89 5.55 0.09 -15.80 16 14 C -0.07 -1.35 2.14 -92.24 -0.20 -1.55 16 15 H 0.11 2.16 6.30 -51.93 -0.33 1.84 16 16 C -0.06 -1.09 7.03 37.75 0.27 -0.82 16 17 S -0.15 -2.77 23.06 -107.50 -2.48 -5.25 16 18 C -0.06 -1.15 6.48 -39.12 -0.25 -1.40 16 19 C -0.10 -1.49 10.05 -39.44 -0.40 -1.89 16 20 C -0.11 -1.53 10.08 -39.63 -0.40 -1.92 16 21 C -0.13 -1.81 10.00 -39.74 -0.40 -2.21 16 22 C -0.09 -1.51 9.97 -39.27 -0.39 -1.90 16 23 C -0.06 -1.23 4.69 -103.79 -0.49 -1.72 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 2.20 6.30 -51.93 -0.33 1.87 16 27 H 0.09 2.26 6.00 -51.93 -0.31 1.95 16 28 H 0.04 1.06 7.27 -51.92 -0.38 0.68 16 29 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 30 H 0.12 2.15 7.87 -51.93 -0.41 1.74 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -28.25 301.31 -9.12 -37.36 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.16 Total: 6.33 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.22 Total: -9.49 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.15 Total: -30.91 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.80 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.04 Total: 13.21 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.48 Total: -5.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.25 -9.12 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.250 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds