Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47594 * 2 1 4 4 C 1.37097 * 119.99782 * 273.20553 * 3 2 1 5 5 H 1.07996 * 119.99944 * 180.02562 * 4 3 2 6 6 C 1.38955 * 119.99801 * 0.02779 * 4 3 2 7 7 N 1.31407 * 120.00293 * 27.21890 * 6 4 3 8 8 Si 1.86801 * 119.99665 * 207.21295 * 6 4 3 9 9 H 1.48498 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46815 * 120.00385 * 8 6 4 11 11 H 1.48500 * 109.47406 * 239.99947 * 8 6 4 12 12 C 1.34771 * 120.00190 * 93.20017 * 3 2 1 13 13 O 1.21294 * 120.00176 * 5.36155 * 12 3 2 14 14 C 1.50702 * 119.99895 * 185.35969 * 12 3 2 15 15 H 1.09003 * 109.20088 * 28.40809 * 14 12 3 16 16 C 1.54136 * 109.28043 * 268.91494 * 14 12 3 17 17 S 1.83301 * 101.11906 * 268.01773 * 16 14 12 18 18 C 1.77516 * 96.57957 * 335.20560 * 17 16 14 19 19 C 1.38824 * 130.55610 * 195.47489 * 18 17 16 20 20 C 1.38022 * 120.16601 * 179.31973 * 19 18 17 21 21 C 1.38328 * 119.28861 * 359.97438 * 20 19 18 22 22 C 1.37704 * 120.54278 * 0.16084 * 21 20 19 23 23 C 1.38887 * 108.29965 * 15.12791 * 18 17 16 24 24 H 1.09002 * 109.47724 * 172.75008 * 1 2 3 25 25 H 1.09000 * 109.47390 * 292.75871 * 1 2 3 26 26 H 1.09004 * 109.47211 * 52.75305 * 1 2 3 27 27 H 1.08998 * 109.47440 * 239.99556 * 2 1 3 28 28 H 1.09008 * 109.46836 * 119.99739 * 2 1 3 29 29 H 0.96993 * 120.00177 * 180.02562 * 7 6 4 30 30 H 1.09002 * 111.10181 * 25.99160 * 16 14 12 31 31 H 1.09003 * 111.10330 * 150.04608 * 16 14 12 32 32 H 1.08005 * 119.91814 * 359.30589 * 19 18 17 33 33 H 1.07997 * 120.36112 * 180.02562 * 20 19 18 34 34 H 1.07997 * 119.72538 * 180.15691 * 21 20 19 35 35 H 1.08000 * 119.46764 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1843 2.0495 -1.1855 5 1 2.5448 3.0676 -1.1855 6 6 1.8887 1.4170 -2.3869 7 7 0.9932 0.4559 -2.4205 8 14 2.7640 1.9333 -3.9542 9 1 3.7192 3.0289 -3.6499 10 1 3.5038 0.7732 -4.5131 11 1 1.7655 2.4077 -4.9457 12 6 2.3045 1.9948 1.1653 13 8 2.2512 1.3746 2.2064 14 6 2.6907 3.4514 1.1749 15 1 2.2236 3.9517 0.3266 16 6 4.2227 3.5726 1.0568 17 16 4.7113 3.6129 2.8231 18 6 3.1693 4.2334 3.4465 19 6 2.8531 4.7940 4.6765 20 6 1.5666 5.2235 4.9327 21 6 0.6004 5.0892 3.9520 22 6 0.9135 4.5305 2.7330 23 6 2.2075 4.0865 2.4554 24 1 -0.3634 -1.0194 -0.1297 25 1 -0.3634 0.3975 0.9476 26 1 -0.3634 0.6220 -0.8181 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 0.7871 0.0141 -3.2591 30 1 4.6473 2.7047 0.5520 31 1 4.5056 4.4954 0.5503 32 1 3.6155 4.8942 5.4349 33 1 1.3172 5.6605 5.8883 34 1 -0.4079 5.4252 4.1441 35 1 0.1454 4.4337 1.9799 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079908513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -1.848575 kcal Electronic energy + Delta-G solvation = -19595.396902 eV Core-core repulsion = 16684.618177 eV Total energy + Delta-G solvation = -2910.778725 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15852 -39.66940 -37.05699 -35.34389 -33.48477 -31.86314 -31.69496 -30.24416 -26.86069 -26.04083 -24.01086 -23.68836 -22.22599 -20.90713 -19.01910 -18.49158 -18.08968 -16.56556 -16.50273 -16.12926 -16.10614 -15.81613 -15.36325 -15.22724 -14.48141 -14.35000 -14.01037 -13.82869 -13.66544 -13.45888 -13.21569 -13.08353 -12.87493 -12.56272 -12.38319 -12.25666 -12.07422 -11.90653 -11.62844 -11.17674 -10.82370 -10.62702 -10.41935 -9.81896 -9.69518 -8.35320 -8.30081 -5.80260 0.23429 0.38295 0.62735 1.24958 1.40386 1.51493 1.62017 1.97768 2.27772 2.64511 2.99503 3.08921 3.43943 3.76077 3.94240 4.07369 4.18166 4.31981 4.44093 4.46599 4.56154 4.62752 4.67115 4.81240 4.84424 4.89984 5.02312 5.11239 5.34328 5.38117 5.42679 5.45300 5.54625 5.76016 5.83794 5.99688 6.46819 7.12531 7.59129 8.00675 8.66676 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.006262 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.720652 B = 4470.106553 C = 4895.315504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.134 3.866 3 N -0.445 5.445 4 C -0.365 4.365 5 H 0.114 0.886 6 C 0.006 3.994 7 N -0.868 5.868 8 Si 0.978 3.022 9 H -0.256 1.256 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.451 3.549 13 O -0.629 6.629 14 C -0.060 4.060 15 H 0.114 0.886 16 C -0.056 4.056 17 S -0.172 6.172 18 C -0.083 4.083 19 C -0.103 4.103 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.097 4.097 24 H 0.054 0.946 25 H 0.009 0.991 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.272 0.728 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.416 9.405 5.366 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.011 3.989 3 N -0.162 5.162 4 C -0.492 4.492 5 H 0.132 0.868 6 C -0.199 4.199 7 N -0.505 5.505 8 Si 0.801 3.199 9 H -0.180 1.180 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.240 3.760 13 O -0.517 6.517 14 C -0.082 4.082 15 H 0.131 0.869 16 C -0.205 4.205 17 S 0.070 5.930 18 C -0.195 4.195 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.103 4.103 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.174 0.826 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.492 8.562 6.167 10.843 hybrid contribution -0.998 -0.121 -1.645 1.928 sum 1.494 8.441 4.523 9.692 Atomic orbital electron populations 1.21794 0.95676 1.01194 0.99037 1.21202 0.95187 0.83330 0.99197 1.44079 1.54842 1.11859 1.05426 1.20040 1.45935 1.00506 0.82689 0.86799 1.25954 0.95278 0.96734 1.01893 1.70340 1.26281 1.25636 1.28247 0.85122 0.78635 0.78512 0.77583 1.17999 1.20837 1.20750 1.20013 0.83974 0.88868 0.83140 1.90522 1.60664 1.67490 1.33050 1.20452 0.95911 0.94345 0.97506 0.86861 1.24213 0.94597 1.07765 0.93909 1.85610 1.17054 1.82875 1.07446 1.22231 0.95925 1.02882 0.98507 1.20745 0.98630 0.99046 0.94225 1.21489 0.91315 0.98547 1.00342 1.21297 1.01218 0.99293 0.92220 1.21052 0.94237 0.98578 0.98887 1.20560 0.95468 0.99673 0.94567 0.92754 0.97165 0.90736 0.89884 0.95216 0.91820 0.87429 0.85065 0.83900 0.81295 0.82585 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 9.46 71.98 0.68 -4.89 16 2 C 0.13 6.68 5.46 86.38 0.47 7.15 16 3 N -0.44 -22.21 2.63 -635.55 -1.67 -23.88 16 4 C -0.37 -17.38 9.15 84.04 0.77 -16.61 16 5 H 0.11 5.00 5.96 -2.91 -0.02 4.98 16 6 C 0.01 0.26 4.98 84.93 0.42 0.68 16 7 N -0.87 -41.92 8.18 21.66 0.18 -41.75 16 8 Si 0.98 36.86 29.63 68.60 2.03 38.90 16 9 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 10 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 12 C 0.45 22.09 6.45 87.66 0.57 22.65 16 13 O -0.63 -34.88 15.89 -3.07 -0.05 -34.93 16 14 C -0.06 -2.41 2.14 -11.84 -0.03 -2.44 16 15 H 0.11 4.39 6.30 -2.39 -0.02 4.37 16 16 C -0.06 -1.97 7.03 72.37 0.51 -1.47 16 17 S -0.17 -6.20 23.06 -56.49 -1.30 -7.51 16 18 C -0.08 -2.99 6.48 22.57 0.15 -2.84 16 19 C -0.10 -2.97 10.05 22.36 0.22 -2.75 16 20 C -0.10 -2.32 10.08 22.24 0.22 -2.09 16 21 C -0.12 -3.14 10.00 22.16 0.22 -2.92 16 22 C -0.11 -3.62 9.97 22.47 0.22 -3.40 16 23 C -0.10 -3.70 4.69 -19.32 -0.09 -3.79 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 3.72 6.30 -2.38 -0.02 3.71 16 27 H 0.08 4.24 6.00 -2.39 -0.01 4.23 16 28 H 0.03 1.52 7.27 -2.38 -0.02 1.51 16 29 H 0.27 12.38 8.31 -92.71 -0.77 11.61 16 30 H 0.11 3.95 7.87 -2.39 -0.02 3.94 16 31 H 0.13 3.67 8.14 -2.39 -0.02 3.65 16 32 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -61.56 301.31 4.63 -56.93 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 1.10 Total: 24.94 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.34 Total: -12.70 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -1.49 Total: -65.63 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.05 Total: -34.93 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.90 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.30 Total: -7.51 kcal Total: -61.56 4.63 -56.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.077 kcal (2) G-P(sol) polarization free energy of solvation -61.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds