Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46498 * 120.00172 * 2 1 4 4 C 1.50699 * 109.47279 * 269.99982 * 3 2 1 5 5 H 1.08001 * 119.99793 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00045 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47153 * 60.00182 * 8 6 4 10 10 H 1.48500 * 109.47053 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46991 * 300.00484 * 8 6 4 12 12 C 1.34772 * 120.00224 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00696 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99987 * 0.02562 * 12 2 1 15 15 H 1.08997 * 109.27272 * 60.46347 * 14 12 2 16 16 C 1.54154 * 109.28001 * 301.01220 * 14 12 2 17 17 S 1.83295 * 101.07895 * 211.36396 * 16 14 12 18 18 C 1.77445 * 96.65966 * 24.65548 * 17 16 14 19 19 C 1.38816 * 130.56123 * 164.21741 * 18 17 16 20 20 C 1.38027 * 120.15734 * 180.90562 * 19 18 17 21 21 C 1.38323 * 119.29804 * 0.25360 * 20 19 18 22 22 C 1.37697 * 120.53726 * 359.80705 * 21 20 19 23 23 C 1.38886 * 108.28271 * 345.19998 * 18 17 16 24 24 H 1.09003 * 109.47447 * 270.00147 * 1 2 3 25 25 H 1.09003 * 109.47318 * 29.99917 * 1 2 3 26 26 H 1.09000 * 109.47423 * 149.99771 * 1 2 3 27 27 H 1.08994 * 109.46973 * 29.99834 * 3 2 1 28 28 H 1.09002 * 109.47651 * 149.99974 * 3 2 1 29 29 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.09001 * 111.09812 * 329.31706 * 16 14 12 31 31 H 1.08997 * 111.09517 * 93.40897 * 16 14 12 32 32 H 1.08002 * 119.92391 * 1.18902 * 19 18 17 33 33 H 1.08007 * 120.35505 * 180.23221 * 20 19 18 34 34 H 1.07997 * 119.73307 * 179.82452 * 21 20 19 35 35 H 1.08003 * 119.47083 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5533 3.6180 -0.6731 8 14 3.4367 3.4175 -3.4340 9 1 2.1390 3.5948 -4.1336 10 1 4.1794 4.7035 -3.4339 11 1 4.2394 2.3828 -4.1344 12 6 2.1388 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0017 15 1 0.7665 -2.5297 -0.8971 16 6 0.4811 -2.5391 1.2450 17 16 0.4708 -4.3418 1.5764 18 6 2.0154 -4.7059 0.7824 19 6 2.8300 -5.8269 0.8638 20 6 4.0140 -5.8765 0.1561 21 6 4.3797 -4.7972 -0.6280 22 6 3.5721 -3.6847 -0.7076 23 6 2.3695 -3.6158 -0.0021 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0302 4.4439 -0.8504 30 1 0.9198 -1.9895 2.0778 31 1 -0.5219 -2.1753 1.0221 32 1 2.5345 -6.6641 1.4787 33 1 4.6485 -6.7486 0.2141 34 1 5.3060 -4.8273 -1.1824 35 1 3.8743 -2.8519 -1.3254 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = -0.759305 kcal Electronic energy + Delta-G solvation = -19112.617528 eV Core-core repulsion = 16201.886037 eV Total energy + Delta-G solvation = -2910.731491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07301 -38.41296 -35.00537 -34.44467 -32.57920 -30.73782 -29.63023 -27.70799 -26.25578 -24.74040 -23.04316 -22.63686 -21.13724 -18.67909 -17.51807 -16.85251 -16.46137 -15.78646 -15.47581 -15.32958 -14.72553 -14.32803 -14.04033 -13.90921 -13.33681 -13.03534 -12.81239 -12.58387 -12.35855 -12.22095 -12.02067 -11.68503 -11.47318 -11.23814 -11.08420 -10.94292 -10.61656 -10.26773 -10.20465 -9.73925 -9.70243 -8.89930 -8.69208 -8.48685 -7.76400 -7.44112 -6.09812 -4.15188 1.18623 1.43327 1.56977 2.17109 3.19389 3.28184 3.33035 3.36040 3.63421 3.91039 4.38597 4.44812 4.58670 4.83425 4.93628 5.03680 5.20074 5.25612 5.32395 5.41479 5.49298 5.61221 5.63622 5.78733 5.85496 6.08214 6.11328 6.31858 6.48595 6.62356 6.93675 6.99461 7.35405 7.42875 7.85544 8.15991 8.26897 8.80227 8.95414 9.50081 10.98265 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.005075 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.703323 B = 5515.769429 C = 6317.064842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.513 3.487 13 O -0.526 6.526 14 C -0.077 4.077 15 H 0.118 0.882 16 C -0.073 4.073 17 S -0.156 6.156 18 C -0.077 4.077 19 C -0.098 4.098 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.084 4.084 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -15.577 2.552 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.297 3.703 13 O -0.403 6.403 14 C -0.099 4.099 15 H 0.135 0.865 16 C -0.222 4.222 17 S 0.086 5.914 18 C -0.189 4.189 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.146 4.146 22 C -0.075 4.075 23 C -0.089 4.089 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.473 -16.030 3.270 17.594 hybrid contribution 0.989 1.205 -1.610 2.241 sum -5.484 -14.825 1.660 15.894 Atomic orbital electron populations 1.21820 0.81525 1.02805 1.00572 1.48128 1.06156 1.07638 1.70980 1.19323 0.92558 0.77792 0.97627 1.21366 1.36876 1.06396 0.92157 0.92515 1.24931 0.95271 0.96332 0.97463 1.69919 1.38148 1.14354 1.30834 0.86555 0.78388 0.77879 0.84578 1.20222 1.21120 1.20176 1.19829 0.87991 0.84343 0.78119 1.90682 1.13469 1.86558 1.49577 1.20771 0.95852 0.93537 0.99790 0.86476 1.24482 1.03674 0.94149 0.99852 1.85876 1.23204 1.08876 1.73452 1.21936 0.97702 0.98025 1.01278 1.20297 0.94075 0.96702 1.01104 1.21069 0.95973 0.98661 0.96681 1.21029 1.00066 0.93462 1.00047 1.21111 0.91618 0.97370 0.97379 1.20277 0.96545 0.93345 0.98777 0.93382 0.90407 0.92361 0.94842 0.93752 0.92585 0.87840 0.85822 0.85823 0.85403 0.85628 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 8.83 59.84 0.53 1.65 16 2 N -0.60 -12.04 2.86 -182.96 -0.52 -12.56 16 3 C 0.25 6.24 5.16 -5.20 -0.03 6.22 16 4 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.51 10.28 6.88 -10.99 -0.08 10.20 16 13 O -0.53 -12.71 13.48 5.55 0.07 -12.63 16 14 C -0.08 -1.19 2.16 -92.23 -0.20 -1.39 16 15 H 0.12 1.60 7.42 -51.93 -0.39 1.22 16 16 C -0.07 -0.93 5.61 37.76 0.21 -0.72 16 17 S -0.16 -2.04 23.08 -107.50 -2.48 -4.52 16 18 C -0.08 -1.13 6.48 -39.13 -0.25 -1.39 16 19 C -0.10 -1.26 10.05 -39.45 -0.40 -1.66 16 20 C -0.10 -1.24 10.08 -39.63 -0.40 -1.64 16 21 C -0.13 -1.70 10.00 -39.75 -0.40 -2.10 16 22 C -0.06 -0.90 8.62 -39.27 -0.34 -1.24 16 23 C -0.08 -1.35 5.38 -103.79 -0.56 -1.91 16 24 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 25 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 26 H 0.06 0.68 5.74 -51.93 -0.30 0.38 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.10 1.39 7.92 -51.93 -0.41 0.98 16 31 H 0.12 1.20 6.47 -51.93 -0.34 0.87 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.14 2.45 6.83 -52.48 -0.36 2.09 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -32.25 303.55 -9.19 -41.44 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.22 Total: -0.07 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.33 Total: -7.27 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.21 Total: -38.00 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.48 Total: -4.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.25 -9.19 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.683 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds