Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46498 * 120.00172 * 2 1 4 4 C 1.50699 * 109.47279 * 269.99982 * 3 2 1 5 5 H 1.08001 * 119.99793 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99682 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00045 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47153 * 60.00182 * 8 6 4 10 10 H 1.48500 * 109.47053 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46991 * 300.00484 * 8 6 4 12 12 C 1.34772 * 120.00224 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00696 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99987 * 0.02562 * 12 2 1 15 15 H 1.08997 * 109.27272 * 60.46347 * 14 12 2 16 16 C 1.54154 * 109.28001 * 301.01220 * 14 12 2 17 17 S 1.83295 * 101.07895 * 211.36396 * 16 14 12 18 18 C 1.77445 * 96.65966 * 24.65548 * 17 16 14 19 19 C 1.38816 * 130.56123 * 164.21741 * 18 17 16 20 20 C 1.38027 * 120.15734 * 180.90562 * 19 18 17 21 21 C 1.38323 * 119.29804 * 0.25360 * 20 19 18 22 22 C 1.37697 * 120.53726 * 359.80705 * 21 20 19 23 23 C 1.38886 * 108.28271 * 345.19998 * 18 17 16 24 24 H 1.09003 * 109.47447 * 270.00147 * 1 2 3 25 25 H 1.09003 * 109.47318 * 29.99917 * 1 2 3 26 26 H 1.09000 * 109.47423 * 149.99771 * 1 2 3 27 27 H 1.08994 * 109.46973 * 29.99834 * 3 2 1 28 28 H 1.09002 * 109.47651 * 149.99974 * 3 2 1 29 29 H 0.97000 * 119.99932 * 179.97438 * 7 6 4 30 30 H 1.09001 * 111.09812 * 329.31706 * 16 14 12 31 31 H 1.08997 * 111.09517 * 93.40897 * 16 14 12 32 32 H 1.08002 * 119.92391 * 1.18902 * 19 18 17 33 33 H 1.08007 * 120.35505 * 180.23221 * 20 19 18 34 34 H 1.07997 * 119.73307 * 179.82452 * 21 20 19 35 35 H 1.08003 * 119.47083 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6728 7 7 3.5533 3.6180 -0.6731 8 14 3.4367 3.4175 -3.4340 9 1 2.1390 3.5948 -4.1336 10 1 4.1794 4.7035 -3.4339 11 1 4.2394 2.3828 -4.1344 12 6 2.1388 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3853 -2.4723 -0.0017 15 1 0.7665 -2.5297 -0.8971 16 6 0.4811 -2.5391 1.2450 17 16 0.4708 -4.3418 1.5764 18 6 2.0154 -4.7059 0.7824 19 6 2.8300 -5.8269 0.8638 20 6 4.0140 -5.8765 0.1561 21 6 4.3797 -4.7972 -0.6280 22 6 3.5721 -3.6847 -0.7076 23 6 2.3695 -3.6158 -0.0021 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6084 2.0283 0.5138 28 1 3.1499 1.1384 0.5138 29 1 4.0302 4.4439 -0.8504 30 1 0.9198 -1.9895 2.0778 31 1 -0.5219 -2.1753 1.0221 32 1 2.5345 -6.6641 1.4787 33 1 4.6485 -6.7486 0.2141 34 1 5.3060 -4.8273 -1.1824 35 1 3.8743 -2.8519 -1.3254 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079908842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = -19.966189 kcal Electronic energy + Delta-G solvation = -19113.450401 eV Core-core repulsion = 16201.886037 eV Total energy + Delta-G solvation = -2911.564364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43529 -39.68432 -36.69501 -35.74473 -34.56816 -31.80587 -30.87535 -29.45471 -27.64410 -26.19303 -24.66775 -23.77816 -22.39696 -20.14328 -18.74735 -18.61870 -18.07015 -17.27584 -16.79078 -16.46630 -16.37871 -15.58595 -15.53264 -15.23399 -14.53329 -14.31764 -14.14860 -13.99207 -13.80500 -13.58463 -13.28861 -13.25586 -13.00091 -12.72372 -12.58550 -12.45852 -12.20011 -12.16752 -11.74321 -11.34942 -10.86162 -10.65946 -10.40212 -9.77959 -9.47128 -8.45008 -8.24342 -6.39210 0.12115 0.35683 0.54442 1.10542 1.35645 1.39427 1.46743 1.69423 2.21356 2.39513 2.72271 3.05643 3.27812 3.45174 3.63669 3.85377 4.01858 4.16708 4.34796 4.36954 4.44283 4.51957 4.57688 4.67341 4.78839 4.93156 4.98196 5.03897 5.20258 5.27029 5.41500 5.51401 5.56648 5.79548 5.93762 6.03193 6.64507 6.71773 7.23832 7.39099 8.82577 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.005075 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.703323 B = 5515.769429 C = 6317.064842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.261 3.739 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.506 3.494 13 O -0.579 6.579 14 C -0.064 4.064 15 H 0.137 0.863 16 C -0.072 4.072 17 S -0.132 6.132 18 C -0.094 4.094 19 C -0.099 4.099 20 C -0.093 4.093 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.112 4.112 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.027 0.973 28 H -0.003 1.003 29 H 0.267 0.733 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -17.591 2.241 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.292 3.708 13 O -0.459 6.459 14 C -0.086 4.086 15 H 0.154 0.846 16 C -0.220 4.220 17 S 0.109 5.891 18 C -0.206 4.206 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.151 4.151 22 C -0.104 4.104 23 C -0.117 4.117 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.045 0.955 28 H 0.015 0.985 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.137 -18.062 2.963 20.031 hybrid contribution 1.526 1.767 -1.462 2.754 sum -6.611 -16.295 1.501 17.649 Atomic orbital electron populations 1.22169 0.77827 1.04257 1.03063 1.48102 1.08440 1.06003 1.70816 1.18770 0.91096 0.80130 0.96064 1.21656 1.37007 1.06560 0.92988 0.92842 1.25836 0.94876 0.96416 1.01858 1.70040 1.38812 1.14808 1.33081 0.85494 0.78866 0.77347 0.79268 1.18397 1.20369 1.20438 1.20686 0.87724 0.85716 0.76636 1.90652 1.16086 1.87527 1.51685 1.20735 0.95756 0.90101 1.02022 0.84593 1.24572 1.04756 0.94515 0.98108 1.85754 1.21915 1.08288 1.73106 1.22240 0.98915 0.98217 1.01267 1.20756 0.93849 0.96786 1.00872 1.21501 0.95918 0.98975 0.94821 1.21298 1.00249 0.93132 1.00419 1.21062 0.93123 0.97751 0.98482 1.20425 0.96985 0.94374 0.99945 0.90282 0.91103 0.88801 0.95506 0.98470 0.92382 0.88745 0.82203 0.83107 0.81502 0.83936 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 8.83 127.77 1.13 3.01 16 2 N -0.60 -24.71 2.86 -851.16 -2.43 -27.14 16 3 C 0.26 13.85 5.16 85.63 0.44 14.29 16 4 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.53 5.46 84.66 0.46 1.00 16 7 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 8 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.51 20.87 6.88 87.66 0.60 21.47 16 13 O -0.58 -29.83 13.48 -3.05 -0.04 -29.87 16 14 C -0.06 -1.93 2.16 -11.84 -0.03 -1.95 16 15 H 0.14 3.48 7.42 -2.39 -0.02 3.46 16 16 C -0.07 -1.65 5.61 72.37 0.41 -1.24 16 17 S -0.13 -3.12 23.08 -56.49 -1.30 -4.43 16 18 C -0.09 -2.60 6.48 22.56 0.15 -2.46 16 19 C -0.10 -2.27 10.05 22.36 0.22 -2.05 16 20 C -0.09 -1.96 10.08 22.24 0.22 -1.73 16 21 C -0.13 -3.46 10.00 22.16 0.22 -3.24 16 22 C -0.08 -2.86 8.62 22.47 0.19 -2.67 16 23 C -0.11 -3.60 5.38 -19.32 -0.10 -3.70 16 24 H 0.08 1.69 7.65 -2.39 -0.02 1.68 16 25 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 26 H 0.09 1.89 5.74 -2.39 -0.01 1.88 16 27 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 28 H 0.00 -0.18 7.42 -2.39 -0.02 -0.19 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.09 2.39 7.92 -2.39 -0.02 2.37 16 31 H 0.16 2.45 6.47 -2.39 -0.02 2.43 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.10 4.05 6.83 -2.91 -0.02 4.03 16 Total: -1.00 -74.35 303.55 3.79 -70.56 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.10 Total: 9.86 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.16 Total: -10.00 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.15 Total: -82.71 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -1.30 Total: -4.43 kcal Total: -74.35 3.79 -70.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.593 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds