Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 120.00217 * 2 1 4 4 C 1.50692 * 109.47138 * 270.00045 * 3 2 1 5 5 H 1.08004 * 120.00264 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00317 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99737 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00500 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47005 * 60.00061 * 8 6 4 10 10 H 1.48498 * 109.47419 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46790 * 299.99837 * 8 6 4 12 12 C 1.34776 * 120.00217 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00807 * 185.42555 * 12 2 1 14 14 C 1.50708 * 119.99637 * 5.42923 * 12 2 1 15 15 H 1.09000 * 109.20795 * 313.91050 * 14 12 2 16 16 C 1.54151 * 109.28654 * 73.40853 * 14 12 2 17 17 S 1.83298 * 101.07121 * 148.69689 * 16 14 12 18 18 C 1.77439 * 96.61896 * 335.18960 * 17 16 14 19 19 C 1.38825 * 130.55985 * 195.60127 * 18 17 16 20 20 C 1.38028 * 120.15767 * 179.57507 * 19 18 17 21 21 C 1.38325 * 119.29264 * 359.47347 * 20 19 18 22 22 C 1.37705 * 120.54114 * 0.42311 * 21 20 19 23 23 C 1.38880 * 108.28887 * 15.01384 * 18 17 16 24 24 H 1.09008 * 109.46984 * 264.84082 * 1 2 3 25 25 H 1.09001 * 109.46945 * 24.83623 * 1 2 3 26 26 H 1.08996 * 109.47545 * 144.83781 * 1 2 3 27 27 H 1.08999 * 109.46701 * 30.00317 * 3 2 1 28 28 H 1.09000 * 109.46956 * 149.99769 * 3 2 1 29 29 H 0.96993 * 119.99935 * 179.97438 * 7 6 4 30 30 H 1.09003 * 111.09778 * 30.74751 * 16 14 12 31 31 H 1.08996 * 111.13948 * 266.66453 * 16 14 12 32 32 H 1.07999 * 119.92324 * 359.34445 * 19 18 17 33 33 H 1.07994 * 120.35544 * 179.73649 * 20 19 18 34 34 H 1.07997 * 119.72903 * 180.45354 * 21 20 19 35 35 H 1.08004 * 119.47147 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5525 3.6186 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.1390 3.5949 -4.1335 10 1 4.1783 4.7041 -3.4339 11 1 4.2395 2.3829 -4.1342 12 6 2.1389 -1.1672 0.0005 13 8 3.3476 -1.1696 0.0998 14 6 1.3904 -2.4694 -0.1224 15 1 0.5347 -2.4563 0.5527 16 6 0.8928 -2.6359 -1.5719 17 16 0.9398 -4.4593 -1.7530 18 6 2.1763 -4.7559 -0.5154 19 6 2.9522 -5.8796 -0.2658 20 6 3.8697 -5.8737 0.7654 21 6 4.0134 -4.7345 1.5369 22 6 3.2451 -3.6192 1.2878 23 6 2.3057 -3.6078 0.2553 24 1 -0.3633 -0.0924 1.0236 25 1 -0.3633 0.9326 -0.4317 26 1 -0.3634 -0.8401 -0.5918 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.0294 4.4444 -0.8503 30 1 1.5700 -2.1538 -2.2770 31 1 -0.1227 -2.2564 -1.6848 32 1 2.8352 -6.7619 -0.8775 33 1 4.4720 -6.7475 0.9651 34 1 4.7343 -4.7196 2.3409 35 1 3.3719 -2.7390 1.9007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = -1.458179 kcal Electronic energy + Delta-G solvation = -19117.377869 eV Core-core repulsion = 16206.616073 eV Total energy + Delta-G solvation = -2910.761797 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05004 -38.42037 -34.96059 -34.41430 -32.58692 -30.77749 -29.60688 -27.82685 -26.14993 -24.75821 -23.06201 -22.65276 -21.14634 -18.61137 -17.57672 -16.78912 -16.54831 -15.79728 -15.37860 -15.17658 -14.86264 -14.30149 -14.22944 -13.90973 -13.30584 -12.94137 -12.82615 -12.63965 -12.32577 -12.15462 -12.01428 -11.68093 -11.47811 -11.28954 -11.10716 -10.92889 -10.60623 -10.28712 -10.20693 -9.75422 -9.68299 -8.93549 -8.71319 -8.48670 -7.74898 -7.42007 -6.10037 -4.15632 1.18047 1.40549 1.59095 2.18344 3.20521 3.28300 3.33142 3.36513 3.63220 3.89605 4.39334 4.41139 4.63958 4.89778 4.92966 5.02426 5.17233 5.25135 5.30109 5.37181 5.56336 5.65411 5.66213 5.80778 5.83055 6.03320 6.11732 6.29139 6.42322 6.56996 6.91669 6.97550 7.36171 7.43628 7.85468 8.15717 8.27485 8.79857 8.95404 9.49825 10.97974 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.005044 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.498897 B = 5550.307341 C = 5821.964224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.514 3.486 13 O -0.527 6.527 14 C -0.077 4.077 15 H 0.114 0.886 16 C -0.070 4.070 17 S -0.152 6.152 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.060 4.060 23 C -0.080 4.080 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.424 -15.660 2.862 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.298 3.702 13 O -0.403 6.403 14 C -0.099 4.099 15 H 0.131 0.869 16 C -0.219 4.219 17 S 0.090 5.910 18 C -0.189 4.189 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.080 4.080 23 C -0.085 4.085 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.432 -16.168 2.096 17.526 hybrid contribution 0.800 1.283 -0.238 1.531 sum -5.632 -14.885 1.858 16.023 Atomic orbital electron populations 1.21776 0.81423 1.03063 1.00428 1.48139 1.06189 1.07630 1.71090 1.19332 0.92660 0.77785 0.97587 1.21369 1.36937 1.06458 0.92146 0.92533 1.24929 0.95245 0.96326 0.97466 1.69919 1.38126 1.14328 1.30836 0.86562 0.78420 0.77910 0.84577 1.20188 1.21094 1.20158 1.19837 0.87904 0.84293 0.78162 1.90693 1.13752 1.86647 1.49221 1.20785 0.98715 0.93526 0.96917 0.86854 1.24335 1.06343 0.93513 0.97663 1.85875 1.47685 1.08103 1.49383 1.21946 1.00276 0.97437 0.99206 1.20320 0.95917 0.96714 0.98955 1.21055 0.97899 0.98372 0.95122 1.20980 0.99905 0.93055 1.00457 1.20908 0.93084 0.97915 0.96074 1.20289 0.98248 0.92880 0.97105 0.93508 0.90240 0.92545 0.94852 0.93670 0.92576 0.87453 0.85945 0.85753 0.85348 0.85635 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.88 59.84 0.59 1.73 16 2 N -0.60 -12.14 2.86 -182.96 -0.52 -12.66 16 3 C 0.25 6.24 5.18 -5.20 -0.03 6.21 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.51 10.35 6.53 -10.98 -0.07 10.28 16 13 O -0.53 -12.85 14.14 5.56 0.08 -12.77 16 14 C -0.08 -1.19 2.13 -92.23 -0.20 -1.39 16 15 H 0.11 1.47 7.40 -51.93 -0.38 1.09 16 16 C -0.07 -0.99 6.38 37.76 0.24 -0.74 16 17 S -0.15 -2.11 23.08 -107.50 -2.48 -4.59 16 18 C -0.08 -1.14 6.48 -39.13 -0.25 -1.39 16 19 C -0.10 -1.23 10.05 -39.44 -0.40 -1.63 16 20 C -0.10 -1.23 10.08 -39.63 -0.40 -1.63 16 21 C -0.12 -1.61 10.00 -39.74 -0.40 -2.01 16 22 C -0.06 -0.94 8.66 -39.27 -0.34 -1.28 16 23 C -0.08 -1.28 5.28 -103.79 -0.55 -1.83 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 26 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.05 1.30 7.35 -51.93 -0.38 0.92 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.11 1.71 7.92 -51.93 -0.41 1.30 16 31 H 0.12 1.36 6.58 -51.93 -0.34 1.01 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.13 2.09 7.29 -52.48 -0.38 1.70 16 LS Contribution 305.63 15.07 4.61 4.61 Total: -1.00 -32.47 305.63 -9.05 -41.52 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.22 Total: -0.21 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.22 Total: -7.00 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.21 Total: -38.11 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.48 Total: -4.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.47 -9.05 -41.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.059 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds