Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47523 * 2 1 4 4 C 1.50697 * 109.47203 * 120.00212 * 2 1 3 5 5 H 1.08005 * 120.00366 * 119.99458 * 4 2 1 6 6 C 1.37876 * 120.00190 * 299.99902 * 4 2 1 7 7 N 1.31518 * 119.99694 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00538 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47089 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47273 * 119.99637 * 8 6 4 11 11 H 1.48499 * 109.47267 * 240.00166 * 8 6 4 12 12 N 1.46505 * 109.47040 * 239.99865 * 2 1 3 13 13 C 1.34777 * 120.00002 * 85.00001 * 12 2 1 14 14 O 1.21281 * 119.99740 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00181 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.20011 * 58.03576 * 15 13 12 17 17 C 1.54146 * 109.28040 * 298.54886 * 15 13 12 18 18 S 1.83300 * 101.07876 * 211.41260 * 17 15 13 19 19 C 1.77429 * 96.61025 * 24.84450 * 18 17 15 20 20 C 1.38825 * 130.57029 * 164.77138 * 19 18 17 21 21 C 1.38027 * 120.16036 * 180.23568 * 20 19 18 22 22 C 1.38318 * 119.29536 * 0.02942 * 21 20 19 23 23 C 1.37704 * 120.54270 * 359.86910 * 22 21 20 24 24 C 1.38891 * 108.28472 * 344.79572 * 19 18 17 25 25 H 1.08992 * 109.46948 * 300.00181 * 1 2 3 26 26 H 1.09003 * 109.46558 * 59.99907 * 1 2 3 27 27 H 1.08995 * 109.47034 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00525 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99922 * 265.00388 * 12 2 1 30 30 H 1.09004 * 111.09769 * 93.46048 * 17 15 13 31 31 H 1.08996 * 111.09716 * 329.36411 * 17 15 13 32 32 H 1.08003 * 119.91626 * 0.22223 * 20 19 18 33 33 H 1.08003 * 120.35005 * 180.02562 * 21 20 19 34 34 H 1.07996 * 119.73275 * 179.85486 * 22 21 20 35 35 H 1.08002 * 119.47212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2878 3.6038 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6499 -0.7286 -3.5875 16 1 1.9943 -1.5709 -3.8082 17 6 4.0773 -1.2491 -3.3270 18 16 4.8017 -1.1463 -5.0076 19 6 3.7236 0.1240 -5.6175 20 6 3.8292 0.9367 -6.7381 21 6 2.8520 1.8727 -7.0104 22 6 1.7708 1.9907 -6.1558 23 6 1.6651 1.1831 -5.0455 24 6 2.6410 0.2285 -4.7538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7096 1.1618 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 4.0603 -2.2786 -2.9693 31 1 4.6097 -0.6021 -2.6300 32 1 4.6781 0.8364 -7.3982 33 1 2.9308 2.5062 -7.8816 34 1 1.0034 2.7223 -6.3609 35 1 0.8138 1.2903 -4.3896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = -13.661246 kcal Electronic energy + Delta-G solvation = -18888.110331 eV Core-core repulsion = 15976.819370 eV Total energy + Delta-G solvation = -2911.290961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99930 -38.38175 -34.99759 -34.34841 -32.42113 -30.77548 -29.81625 -28.54795 -25.35396 -24.95963 -22.81002 -22.12230 -20.60055 -19.46265 -17.74261 -17.25518 -16.06754 -15.66069 -15.43558 -15.30495 -14.82421 -14.41317 -13.93783 -13.84094 -13.28029 -13.00696 -12.78844 -12.51108 -12.29843 -12.23829 -11.70618 -11.50806 -11.21679 -11.09725 -10.96968 -10.78838 -10.36628 -10.30215 -10.27738 -9.75254 -9.11472 -9.00349 -8.73250 -8.61230 -8.02113 -7.44809 -6.17944 -4.27624 1.15956 1.39756 1.55692 2.16585 3.17362 3.20354 3.28337 3.30523 3.64739 3.98613 4.32044 4.41734 4.58746 4.89316 4.94334 5.08605 5.14781 5.31649 5.36843 5.44609 5.59575 5.63869 5.82280 6.04075 6.28123 6.43022 6.57141 6.75109 6.88166 6.93353 7.07492 7.34971 7.47320 7.62448 7.83805 8.08153 8.54366 8.70167 8.98781 9.40115 10.88060 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.004458 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.172169 B = 6280.016925 C = 7000.219837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.704 5.704 13 C 0.510 3.490 14 O -0.540 6.540 15 C -0.079 4.079 16 H 0.117 0.883 17 C -0.073 4.073 18 S -0.152 6.152 19 C -0.077 4.077 20 C -0.098 4.098 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.056 4.056 24 C -0.083 4.083 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.389 0.611 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -3.291 -15.560 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.418 6.418 15 C -0.101 4.101 16 H 0.135 0.865 17 C -0.221 4.221 18 S 0.090 5.910 19 C -0.189 4.189 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.076 4.076 24 C -0.088 4.088 25 H 0.109 0.891 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.251 -3.059 -15.865 16.707 hybrid contribution -0.601 -0.220 1.484 1.616 sum 3.651 -3.279 -14.381 15.195 Atomic orbital electron populations 1.22077 0.98374 0.99160 1.00938 1.18782 0.91073 0.94003 0.79868 0.93308 1.21235 1.32542 1.13270 0.90261 0.91983 1.24888 0.94753 0.94926 0.99100 1.69907 1.35833 1.22407 1.23865 0.86390 0.78629 0.79531 0.82538 1.19709 1.20842 1.20845 1.46541 1.64726 1.13529 1.10365 1.19941 0.79048 0.87538 0.84276 1.90673 1.50900 1.15681 1.84540 1.20798 0.97347 0.98551 0.93431 0.86480 1.24326 0.95370 1.06297 0.96152 1.85912 1.46759 1.45231 1.13110 1.21964 0.97556 0.99978 0.99449 1.20310 0.99880 0.95616 0.96303 1.21064 0.93989 0.97828 0.99491 1.21010 0.98781 0.99949 0.94929 1.21022 0.98523 0.92595 0.95431 1.20276 0.95422 0.98188 0.94953 0.89094 0.96679 0.95418 0.92571 0.77863 0.85932 0.87539 0.85790 0.85385 0.85661 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.49 2.56 -69.08 -0.18 6.31 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.74 8.73 -34.44 -0.30 -14.04 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.70 -13.79 4.98 -54.93 -0.27 -14.06 16 13 C 0.51 9.64 6.88 -10.99 -0.08 9.56 16 14 O -0.54 -12.26 13.68 5.56 0.08 -12.19 16 15 C -0.08 -1.16 2.94 -92.24 -0.27 -1.43 16 16 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 17 C -0.07 -0.93 6.90 37.76 0.26 -0.67 16 18 S -0.15 -2.00 23.08 -107.50 -2.48 -4.49 16 19 C -0.08 -1.11 6.48 -39.12 -0.25 -1.37 16 20 C -0.10 -1.22 10.05 -39.44 -0.40 -1.62 16 21 C -0.10 -1.19 10.08 -39.63 -0.40 -1.59 16 22 C -0.13 -1.61 10.00 -39.75 -0.40 -2.01 16 23 C -0.06 -0.86 8.62 -39.27 -0.34 -1.20 16 24 C -0.08 -1.28 5.36 -103.79 -0.56 -1.84 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 6.46 8.48 -40.82 -0.35 6.11 16 30 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.11 1.48 7.92 -51.93 -0.41 1.07 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 33 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 2.17 6.93 -52.49 -0.36 1.81 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -30.04 306.86 -9.43 -39.48 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.33 Total: 6.65 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.66 Total: -11.43 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.35 Total: -37.88 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.48 Total: -4.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.04 -9.43 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.818 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds