Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47523 * 2 1 4 4 C 1.50697 * 109.47203 * 120.00212 * 2 1 3 5 5 H 1.08005 * 120.00366 * 119.99458 * 4 2 1 6 6 C 1.37876 * 120.00190 * 299.99902 * 4 2 1 7 7 N 1.31518 * 119.99694 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00538 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47089 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47273 * 119.99637 * 8 6 4 11 11 H 1.48499 * 109.47267 * 240.00166 * 8 6 4 12 12 N 1.46505 * 109.47040 * 239.99865 * 2 1 3 13 13 C 1.34777 * 120.00002 * 85.00001 * 12 2 1 14 14 O 1.21281 * 119.99740 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00181 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.20011 * 58.03576 * 15 13 12 17 17 C 1.54146 * 109.28040 * 298.54886 * 15 13 12 18 18 S 1.83300 * 101.07876 * 211.41260 * 17 15 13 19 19 C 1.77429 * 96.61025 * 24.84450 * 18 17 15 20 20 C 1.38825 * 130.57029 * 164.77138 * 19 18 17 21 21 C 1.38027 * 120.16036 * 180.23568 * 20 19 18 22 22 C 1.38318 * 119.29536 * 0.02942 * 21 20 19 23 23 C 1.37704 * 120.54270 * 359.86910 * 22 21 20 24 24 C 1.38891 * 108.28472 * 344.79572 * 19 18 17 25 25 H 1.08992 * 109.46948 * 300.00181 * 1 2 3 26 26 H 1.09003 * 109.46558 * 59.99907 * 1 2 3 27 27 H 1.08995 * 109.47034 * 180.02562 * 1 2 3 28 28 H 0.96997 * 120.00525 * 180.02562 * 7 6 4 29 29 H 0.96995 * 119.99922 * 265.00388 * 12 2 1 30 30 H 1.09004 * 111.09769 * 93.46048 * 17 15 13 31 31 H 1.08996 * 111.09716 * 329.36411 * 17 15 13 32 32 H 1.08003 * 119.91626 * 0.22223 * 20 19 18 33 33 H 1.08003 * 120.35005 * 180.02562 * 21 20 19 34 34 H 1.07996 * 119.73275 * 179.85486 * 22 21 20 35 35 H 1.08002 * 119.47212 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2878 3.6038 10 1 3.1467 -0.1875 4.8165 11 1 1.1661 -1.5867 4.8160 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6499 -0.7286 -3.5875 16 1 1.9943 -1.5709 -3.8082 17 6 4.0773 -1.2491 -3.3270 18 16 4.8017 -1.1463 -5.0076 19 6 3.7236 0.1240 -5.6175 20 6 3.8292 0.9367 -6.7381 21 6 2.8520 1.8727 -7.0104 22 6 1.7708 1.9907 -6.1558 23 6 1.6651 1.1831 -5.0455 24 6 2.6410 0.2285 -4.7538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7096 1.1618 3.4843 29 1 2.2490 -1.6318 -1.1526 30 1 4.0603 -2.2786 -2.9693 31 1 4.6097 -0.6021 -2.6300 32 1 4.6781 0.8364 -7.3982 33 1 2.9308 2.5062 -7.8816 34 1 1.0034 2.7223 -6.3609 35 1 0.8138 1.2903 -4.3896 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079908859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = -31.348718 kcal Electronic energy + Delta-G solvation = -18888.877317 eV Core-core repulsion = 15976.819370 eV Total energy + Delta-G solvation = -2912.057948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32708 -39.66689 -36.78616 -35.59843 -34.27801 -31.79974 -31.26142 -30.02322 -27.36018 -26.19437 -23.89588 -23.49139 -22.11727 -21.06118 -19.08578 -18.57758 -17.67209 -17.23583 -16.78495 -16.38724 -16.32302 -15.57090 -15.44598 -15.27908 -14.50728 -14.44096 -14.20146 -13.96703 -13.74598 -13.30983 -13.27734 -12.98453 -12.86450 -12.74641 -12.50058 -12.29459 -12.16302 -12.11640 -11.36438 -11.10454 -10.87903 -10.63712 -10.44005 -9.80782 -9.75792 -8.45867 -8.18542 -6.35890 0.13084 0.36248 0.54033 1.10720 1.44184 1.45723 1.57173 1.70045 2.29743 2.49460 2.76691 3.12478 3.30286 3.47007 3.79040 3.92412 4.10380 4.17810 4.39449 4.46799 4.54037 4.58071 4.73614 4.80221 4.90334 5.02193 5.08242 5.27430 5.40597 5.42661 5.54797 5.59242 5.67040 5.88047 5.94463 6.08426 6.71896 6.89437 7.30722 7.48793 8.87950 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.029154 B = 0.004458 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.172169 B = 6280.016925 C = 7000.219837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.698 5.698 13 C 0.509 3.491 14 O -0.582 6.582 15 C -0.066 4.066 16 H 0.142 0.858 17 C -0.072 4.072 18 S -0.137 6.137 19 C -0.096 4.096 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.130 4.130 23 C -0.082 4.082 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.012 0.988 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.156 0.844 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -4.908 -16.875 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.347 5.347 13 C 0.294 3.706 14 O -0.463 6.463 15 C -0.088 4.088 16 H 0.159 0.841 17 C -0.220 4.220 18 S 0.105 5.895 19 C -0.208 4.208 20 C -0.124 4.124 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.102 4.102 24 C -0.115 4.115 25 H 0.084 0.916 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.174 0.826 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.549 -4.716 -17.208 18.685 hybrid contribution -1.005 0.375 1.797 2.093 sum 4.544 -4.342 -15.411 16.643 Atomic orbital electron populations 1.21895 0.98278 0.99535 0.99546 1.18348 0.91101 0.91888 0.81836 0.98438 1.21577 1.32486 1.13554 0.90646 0.90571 1.25788 0.94869 0.95550 1.02341 1.70059 1.37104 1.23982 1.24529 0.85306 0.78069 0.78563 0.78458 1.18157 1.21163 1.20549 1.46237 1.64837 1.14241 1.09386 1.20669 0.77767 0.87109 0.85060 1.90654 1.52424 1.17878 1.85337 1.20767 0.98795 0.98668 0.90612 0.84055 1.24400 0.93664 1.07831 0.96135 1.85810 1.46435 1.44706 1.12590 1.22244 0.97505 1.00928 1.00124 1.20745 1.00769 0.94998 0.95884 1.21498 0.92578 0.97362 0.99895 1.21317 0.99897 0.99597 0.94194 1.21041 0.98396 0.94216 0.96557 1.20429 0.96276 0.99033 0.95793 0.91608 0.96902 0.93949 0.92604 0.75782 0.82576 0.88985 0.83389 0.81591 0.83656 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.70 2.56 44.24 0.11 13.82 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.54 -27.97 8.73 25.60 0.22 -27.75 16 5 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.77 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.10 11.32 21.45 0.24 -51.86 16 8 Si 0.97 41.23 29.54 68.60 2.03 43.25 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.70 -27.42 4.98 -446.10 -2.22 -29.65 16 13 C 0.51 19.59 6.88 87.66 0.60 20.19 16 14 O -0.58 -27.74 13.68 -3.03 -0.04 -27.78 16 15 C -0.07 -1.90 2.94 -11.84 -0.03 -1.93 16 16 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 17 C -0.07 -1.72 6.90 72.37 0.50 -1.22 16 18 S -0.14 -3.34 23.08 -56.49 -1.30 -4.64 16 19 C -0.10 -2.62 6.48 22.57 0.15 -2.47 16 20 C -0.10 -2.27 10.05 22.36 0.22 -2.04 16 21 C -0.09 -1.89 10.08 22.24 0.22 -1.67 16 22 C -0.13 -3.18 10.00 22.16 0.22 -2.96 16 23 C -0.08 -2.57 8.62 22.47 0.19 -2.38 16 24 C -0.11 -3.36 5.36 -19.32 -0.10 -3.47 16 25 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 26 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.41 12.97 8.48 -92.71 -0.79 12.18 16 30 H 0.16 2.60 8.14 -2.38 -0.02 2.59 16 31 H 0.09 2.48 7.92 -2.39 -0.02 2.46 16 32 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.11 3.79 6.93 -2.91 -0.02 3.77 16 Total: -1.00 -67.18 306.86 2.45 -64.73 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.32 Total: 22.57 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.43 Total: -16.62 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.98 Total: -81.51 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.30 Total: -4.64 kcal Total: -67.18 2.45 -64.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.381 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds