Wall clock time and date at job start Mon Mar 30 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47488 * 2 1 4 4 C 1.50703 * 109.47274 * 119.99892 * 2 1 3 5 5 H 1.08005 * 120.00060 * 25.53425 * 4 2 1 6 6 C 1.37879 * 120.00281 * 205.53869 * 4 2 1 7 7 N 1.31507 * 119.99878 * 353.57669 * 6 4 2 8 8 Si 1.86801 * 119.99800 * 173.29872 * 6 4 2 9 9 H 1.48497 * 109.47236 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46752 * 120.00209 * 8 6 4 11 11 H 1.48499 * 109.47295 * 239.99834 * 8 6 4 12 12 N 1.46503 * 109.47543 * 239.99414 * 2 1 3 13 13 C 1.34779 * 119.99463 * 85.00266 * 12 2 1 14 14 O 1.21279 * 120.00415 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99982 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.25627 * 300.69718 * 15 13 12 17 17 C 1.54137 * 109.27486 * 60.20091 * 15 13 12 18 18 S 1.83296 * 101.08545 * 92.13899 * 17 15 13 19 19 C 1.77435 * 96.59787 * 24.87894 * 18 17 15 20 20 C 1.38820 * 130.56810 * 164.55515 * 19 18 17 21 21 C 1.38026 * 120.16229 * 180.22609 * 20 19 18 22 22 C 1.38329 * 119.28734 * 0.02562 * 21 20 19 23 23 C 1.37695 * 120.54035 * 359.87831 * 22 21 20 24 24 C 1.38708 * 108.24294 * 344.55284 * 19 18 17 25 25 H 1.09002 * 109.47037 * 55.73499 * 1 2 3 26 26 H 1.09006 * 109.47326 * 175.73494 * 1 2 3 27 27 H 1.08995 * 109.47400 * 295.73487 * 1 2 3 28 28 H 0.97006 * 120.00267 * 354.31833 * 7 6 4 29 29 H 0.96994 * 120.00390 * 265.00156 * 12 2 1 30 30 H 1.08994 * 111.10015 * 210.09731 * 17 15 13 31 31 H 1.09003 * 111.09048 * 334.14358 * 17 15 13 32 32 H 1.08000 * 119.91970 * 0.24052 * 20 19 18 33 33 H 1.07992 * 120.35557 * 180.02562 * 21 20 19 34 34 H 1.07998 * 119.72349 * 179.85727 * 22 21 20 35 35 H 1.08007 * 119.46928 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4166 -1.4548 1.7135 6 6 3.2779 -0.4100 1.7398 7 7 4.0783 0.4012 1.0836 8 14 3.8252 -1.1493 3.3656 9 1 2.7465 -2.0167 3.9031 10 1 5.0523 -1.9584 3.1532 11 1 4.1120 -0.0599 4.3332 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4118 15 6 2.6490 -0.7289 -3.5876 16 1 3.6430 -1.1306 -3.3905 17 6 1.6917 -1.8866 -3.9327 18 16 0.5442 -1.0595 -5.0984 19 6 1.6696 0.2052 -5.6296 20 6 1.6171 1.0595 -6.7225 21 6 2.6283 1.9741 -6.9370 22 6 3.6909 2.0279 -6.0529 23 6 3.7418 1.1817 -4.9679 24 6 2.7261 0.2512 -4.7319 25 1 -0.3633 0.5786 -0.8493 26 1 -0.3634 -1.0249 -0.0764 27 1 -0.3634 0.4462 0.9257 28 1 3.8277 0.7230 0.2035 29 1 2.2491 -1.6318 -1.1525 30 1 2.2238 -2.7039 -4.4194 31 1 1.1650 -2.2378 -3.0453 32 1 0.7828 1.0087 -7.4064 33 1 2.5904 2.6405 -7.7859 34 1 4.4871 2.7392 -6.2154 35 1 4.5794 1.2388 -4.2884 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:24 Heat of formation + Delta-G solvation = -20.752113 kcal Electronic energy + Delta-G solvation = -19174.213939 eV Core-core repulsion = 16262.615495 eV Total energy + Delta-G solvation = -2911.598444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89026 -38.33475 -35.08682 -34.23976 -32.15033 -30.79029 -29.97017 -28.82617 -24.95563 -24.68868 -22.76120 -22.19726 -20.79176 -19.29725 -17.81420 -17.41549 -16.42413 -15.58340 -15.45813 -15.01581 -14.55677 -14.25873 -13.87777 -13.64904 -13.37229 -13.18588 -12.85338 -12.67515 -12.44428 -12.24680 -11.81686 -11.46829 -11.24740 -11.04366 -10.95362 -10.87303 -10.25511 -10.15129 -10.08723 -9.61862 -9.24855 -8.83366 -8.69567 -8.60176 -7.87543 -7.33433 -6.59028 -4.40507 1.22983 1.40039 1.60901 2.27367 3.32485 3.33228 3.35078 3.49830 3.64889 4.16456 4.36703 4.45058 4.63445 4.90498 5.03994 5.05359 5.25921 5.34227 5.42923 5.45372 5.59673 5.67416 5.86133 6.02208 6.30822 6.34057 6.40315 6.53340 6.54418 6.59766 6.93250 7.03555 7.21113 7.60371 7.85859 8.23232 8.54378 8.72497 9.13401 9.40098 10.77765 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.005065 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.448037 B = 5526.929829 C = 6014.170544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.237 3.763 3 H 0.052 0.948 4 C -0.607 4.607 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.890 5.890 8 Si 1.074 2.926 9 H -0.287 1.287 10 H -0.287 1.287 11 H -0.284 1.284 12 N -0.703 5.703 13 C 0.508 3.492 14 O -0.544 6.544 15 C -0.087 4.087 16 H 0.115 0.885 17 C -0.076 4.076 18 S -0.146 6.146 19 C -0.070 4.070 20 C -0.093 4.093 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.077 4.077 24 C -0.068 4.068 25 H 0.033 0.967 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.278 0.722 29 H 0.385 0.615 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 -3.536 -13.485 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.138 3.862 3 H 0.070 0.930 4 C -0.645 4.645 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.523 5.523 8 Si 0.901 3.099 9 H -0.212 1.212 10 H -0.213 1.213 11 H -0.210 1.210 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.423 6.423 15 C -0.110 4.110 16 H 0.133 0.867 17 C -0.224 4.224 18 S 0.095 5.905 19 C -0.183 4.183 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.097 4.097 24 C -0.074 4.074 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.219 0.781 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.476 -3.038 -12.607 13.051 hybrid contribution 0.194 -0.169 -0.776 0.817 sum -1.282 -3.207 -13.382 13.821 Atomic orbital electron populations 1.21994 0.98413 0.99657 0.99833 1.18922 0.90049 0.94970 0.82237 0.92999 1.22196 1.04522 1.26767 1.11059 0.92427 1.26032 0.93189 0.94766 1.03863 1.70677 1.38316 1.28737 1.14613 0.83488 0.75564 0.76116 0.74705 1.21237 1.21314 1.20982 1.47714 1.64450 1.13541 1.09521 1.20095 0.78986 0.87662 0.84125 1.90650 1.50804 1.15848 1.84962 1.20897 1.01836 0.93907 0.94315 0.86729 1.24331 0.97741 0.98701 1.01651 1.85927 1.20666 1.31841 1.52035 1.21920 0.96930 1.00971 0.98464 1.20323 0.99488 0.95845 0.96002 1.21029 0.93980 0.98033 0.99526 1.20918 0.98954 0.99221 0.95048 1.20850 0.97817 0.94033 0.96988 1.20234 0.95561 0.98052 0.93561 0.94817 0.94263 0.92856 0.91073 0.78141 0.87568 0.86191 0.85785 0.85345 0.85668 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.46 37.15 0.35 -2.75 16 2 C 0.24 5.86 2.05 -69.08 -0.14 5.72 16 3 H 0.05 1.49 6.57 -51.93 -0.34 1.15 16 4 C -0.61 -15.77 8.50 -34.44 -0.29 -16.07 16 5 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 6 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 7 N -0.89 -25.66 13.56 55.43 0.75 -24.91 16 8 Si 1.07 23.54 29.91 -169.99 -5.08 18.45 16 9 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 N -0.70 -14.98 4.67 -54.93 -0.26 -15.24 16 13 C 0.51 10.63 7.02 -10.98 -0.08 10.55 16 14 O -0.54 -13.61 15.68 5.56 0.09 -13.52 16 15 C -0.09 -1.42 2.93 -92.25 -0.27 -1.69 16 16 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 17 C -0.08 -1.03 7.00 37.75 0.26 -0.76 16 18 S -0.15 -2.24 23.06 -107.50 -2.48 -4.72 16 19 C -0.07 -1.13 6.48 -39.19 -0.25 -1.38 16 20 C -0.09 -1.28 10.05 -39.44 -0.40 -1.68 16 21 C -0.11 -1.30 10.08 -39.63 -0.40 -1.70 16 22 C -0.12 -1.59 10.00 -39.75 -0.40 -1.98 16 23 C -0.08 -1.19 9.98 -39.21 -0.39 -1.59 16 24 C -0.07 -1.14 4.45 -103.80 -0.46 -1.60 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.28 8.20 6.93 -40.82 -0.28 7.92 16 29 H 0.39 7.37 8.20 -40.82 -0.33 7.04 16 30 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.12 1.59 7.26 -51.93 -0.38 1.21 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 311.35 15.07 4.69 4.69 Total: -1.00 -31.65 311.35 -9.20 -40.85 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.35 Total: 8.60 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.56 Total: -14.21 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.50 Total: -40.15 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.08 Total: 18.45 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.48 Total: -4.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.65 -9.20 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.097 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds