Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47488 * 2 1 4 4 C 1.50703 * 109.47274 * 119.99892 * 2 1 3 5 5 H 1.08005 * 120.00060 * 25.53425 * 4 2 1 6 6 C 1.37879 * 120.00281 * 205.53869 * 4 2 1 7 7 N 1.31507 * 119.99878 * 353.57669 * 6 4 2 8 8 Si 1.86801 * 119.99800 * 173.29872 * 6 4 2 9 9 H 1.48497 * 109.47236 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.46752 * 120.00209 * 8 6 4 11 11 H 1.48499 * 109.47295 * 239.99834 * 8 6 4 12 12 N 1.46503 * 109.47543 * 239.99414 * 2 1 3 13 13 C 1.34779 * 119.99463 * 85.00266 * 12 2 1 14 14 O 1.21279 * 120.00415 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99982 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.25627 * 300.69718 * 15 13 12 17 17 C 1.54137 * 109.27486 * 60.20091 * 15 13 12 18 18 S 1.83296 * 101.08545 * 92.13899 * 17 15 13 19 19 C 1.77435 * 96.59787 * 24.87894 * 18 17 15 20 20 C 1.38820 * 130.56810 * 164.55515 * 19 18 17 21 21 C 1.38026 * 120.16229 * 180.22609 * 20 19 18 22 22 C 1.38329 * 119.28734 * 0.02562 * 21 20 19 23 23 C 1.37695 * 120.54035 * 359.87831 * 22 21 20 24 24 C 1.38708 * 108.24294 * 344.55284 * 19 18 17 25 25 H 1.09002 * 109.47037 * 55.73499 * 1 2 3 26 26 H 1.09006 * 109.47326 * 175.73494 * 1 2 3 27 27 H 1.08995 * 109.47400 * 295.73487 * 1 2 3 28 28 H 0.97006 * 120.00267 * 354.31833 * 7 6 4 29 29 H 0.96994 * 120.00390 * 265.00156 * 12 2 1 30 30 H 1.08994 * 111.10015 * 210.09731 * 17 15 13 31 31 H 1.09003 * 111.09048 * 334.14358 * 17 15 13 32 32 H 1.08000 * 119.91970 * 0.24052 * 20 19 18 33 33 H 1.07992 * 120.35557 * 180.02562 * 21 20 19 34 34 H 1.07998 * 119.72349 * 179.85727 * 22 21 20 35 35 H 1.08007 * 119.46928 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 1.4166 -1.4548 1.7135 6 6 3.2779 -0.4100 1.7398 7 7 4.0783 0.4012 1.0836 8 14 3.8252 -1.1493 3.3656 9 1 2.7465 -2.0167 3.9031 10 1 5.0523 -1.9584 3.1532 11 1 4.1120 -0.0599 4.3332 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8583 1.1583 -2.4118 15 6 2.6490 -0.7289 -3.5876 16 1 3.6430 -1.1306 -3.3905 17 6 1.6917 -1.8866 -3.9327 18 16 0.5442 -1.0595 -5.0984 19 6 1.6696 0.2052 -5.6296 20 6 1.6171 1.0595 -6.7225 21 6 2.6283 1.9741 -6.9370 22 6 3.6909 2.0279 -6.0529 23 6 3.7418 1.1817 -4.9679 24 6 2.7261 0.2512 -4.7319 25 1 -0.3633 0.5786 -0.8493 26 1 -0.3634 -1.0249 -0.0764 27 1 -0.3634 0.4462 0.9257 28 1 3.8277 0.7230 0.2035 29 1 2.2491 -1.6318 -1.1525 30 1 2.2238 -2.7039 -4.4194 31 1 1.1650 -2.2378 -3.0453 32 1 0.7828 1.0087 -7.4064 33 1 2.5904 2.6405 -7.7859 34 1 4.4871 2.7392 -6.2154 35 1 4.5794 1.2388 -4.2884 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079908868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = -39.879097 kcal Electronic energy + Delta-G solvation = -19175.043347 eV Core-core repulsion = 16262.615495 eV Total energy + Delta-G solvation = -2912.427853 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31263 -39.72688 -36.93298 -35.60824 -34.08154 -31.87599 -31.56327 -30.18811 -26.79847 -26.15312 -23.87808 -23.69421 -22.34942 -20.96136 -19.45439 -18.72670 -18.09114 -16.96474 -16.72798 -16.24594 -16.02637 -15.66866 -15.58733 -15.47614 -14.83769 -14.49873 -14.15041 -13.98115 -13.81577 -13.57680 -13.37616 -13.03384 -12.93752 -12.66228 -12.52829 -12.10799 -12.05458 -11.88386 -11.28263 -11.06998 -10.74572 -10.72042 -10.62586 -9.83506 -9.72494 -8.71743 -8.48754 -6.53841 0.11954 0.30222 0.48957 1.13591 1.56797 1.61873 1.71258 1.81071 2.33579 2.53876 2.75049 3.22796 3.26220 3.41447 3.79924 3.92500 4.10784 4.13421 4.29420 4.38303 4.44824 4.47506 4.52196 4.69950 4.70040 4.75573 4.94469 5.15881 5.23052 5.26129 5.35162 5.47658 5.70519 5.90591 5.93316 6.12051 6.42886 6.91283 7.35483 7.45117 8.63949 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.005065 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.448037 B = 5526.929829 C = 6014.170544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.240 3.760 3 H 0.002 0.998 4 C -0.611 4.611 5 H 0.064 0.936 6 C -0.016 4.016 7 N -0.921 5.921 8 Si 1.123 2.877 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.699 5.699 13 C 0.506 3.494 14 O -0.590 6.590 15 C -0.078 4.078 16 H 0.131 0.869 17 C -0.065 4.065 18 S -0.169 6.169 19 C -0.089 4.089 20 C -0.102 4.102 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.100 4.100 24 C -0.098 4.098 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.259 0.741 29 H 0.398 0.602 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -4.719 -14.382 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.139 3.861 3 H 0.021 0.979 4 C -0.649 4.649 5 H 0.082 0.918 6 C -0.218 4.218 7 N -0.556 5.556 8 Si 0.945 3.055 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.349 5.349 13 C 0.292 3.708 14 O -0.471 6.471 15 C -0.100 4.100 16 H 0.149 0.851 17 C -0.213 4.213 18 S 0.072 5.928 19 C -0.201 4.201 20 C -0.125 4.125 21 C -0.115 4.115 22 C -0.142 4.142 23 C -0.120 4.120 24 C -0.103 4.103 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.234 0.766 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.186 0.814 34 H 0.171 0.829 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.509 -4.258 -13.525 14.259 hybrid contribution 0.161 0.285 -0.586 0.671 sum -1.348 -3.973 -14.111 14.721 Atomic orbital electron populations 1.21869 0.96476 1.00802 0.99667 1.18666 0.91494 0.92579 0.83368 0.97947 1.22414 1.04445 1.26461 1.11566 0.91760 1.27443 0.93544 0.94300 1.06542 1.70818 1.39356 1.31086 1.14331 0.82859 0.76109 0.75708 0.70866 1.18922 1.20438 1.21146 1.47238 1.64540 1.14007 1.09092 1.20790 0.77736 0.87163 0.85113 1.90618 1.52635 1.18043 1.85815 1.20826 1.02985 0.94380 0.91829 0.85087 1.24441 0.96845 0.98370 1.01641 1.85898 1.21875 1.32354 1.52668 1.22172 0.96772 1.01801 0.99363 1.20753 1.00583 0.95484 0.95691 1.21511 0.92596 0.97427 0.99991 1.21315 1.00000 0.98766 0.94109 1.21077 0.97876 0.94896 0.98168 1.20365 0.96654 0.99153 0.94168 0.95560 0.92192 0.92585 0.93044 0.76637 0.83873 0.85865 0.83762 0.81426 0.82882 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 9.46 71.98 0.68 -5.04 16 2 C 0.24 12.09 2.05 44.24 0.09 12.18 16 3 H 0.00 0.15 6.57 -2.38 -0.02 0.13 16 4 C -0.61 -31.70 8.50 25.60 0.22 -31.48 16 5 H 0.06 3.21 7.82 -2.91 -0.02 3.19 16 6 C -0.02 -0.88 5.45 84.66 0.46 -0.42 16 7 N -0.92 -54.41 13.56 21.45 0.29 -54.12 16 8 Si 1.12 46.73 29.91 68.60 2.05 48.78 16 9 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 10 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16 12 N -0.70 -30.17 4.67 -446.10 -2.08 -32.25 16 13 C 0.51 21.60 7.02 87.66 0.62 22.22 16 14 O -0.59 -30.67 15.68 -3.03 -0.05 -30.71 16 15 C -0.08 -2.51 2.93 -11.85 -0.03 -2.54 16 16 H 0.13 3.70 8.14 -2.38 -0.02 3.68 16 17 C -0.07 -1.66 7.00 72.37 0.51 -1.15 16 18 S -0.17 -5.03 23.06 -56.49 -1.30 -6.33 16 19 C -0.09 -2.77 6.48 22.52 0.15 -2.63 16 20 C -0.10 -2.62 10.05 22.36 0.22 -2.39 16 21 C -0.10 -2.09 10.08 22.24 0.22 -1.86 16 22 C -0.12 -2.98 10.00 22.16 0.22 -2.76 16 23 C -0.10 -3.10 9.98 22.51 0.22 -2.87 16 24 C -0.10 -3.24 4.45 -19.33 -0.09 -3.32 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.26 16.01 6.93 -92.70 -0.64 15.37 16 29 H 0.40 15.09 8.20 -92.71 -0.76 14.33 16 30 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.12 3.06 7.26 -2.39 -0.02 3.04 16 32 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.78 311.35 2.88 -67.90 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.47 Total: 28.81 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.49 Total: -22.08 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.79 Total: -86.37 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.05 Total: 48.78 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -1.30 Total: -6.33 kcal Total: -70.78 2.88 -67.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.022 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds