Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.50697 * 109.46991 * 240.00155 * 2 1 3 5 5 H 1.08008 * 119.99861 * 275.00052 * 4 2 1 6 6 C 1.37879 * 120.00320 * 95.00412 * 4 2 1 7 7 N 1.31515 * 119.99837 * 184.91117 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 4.91529 * 6 4 2 9 9 H 1.48500 * 109.47373 * 84.82867 * 8 6 4 10 10 H 1.48495 * 109.47158 * 204.83288 * 8 6 4 11 11 H 1.48504 * 109.46951 * 324.83290 * 8 6 4 12 12 N 1.46501 * 109.46882 * 120.00031 * 2 1 3 13 13 C 1.34775 * 119.99748 * 274.99981 * 12 2 1 14 14 O 1.21278 * 120.00471 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99818 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.26942 * 299.51905 * 15 13 12 17 17 C 1.54147 * 109.27632 * 58.95405 * 15 13 12 18 18 S 1.83299 * 101.07993 * 92.03048 * 17 15 13 19 19 C 1.77433 * 96.60818 * 24.85367 * 18 17 15 20 20 C 1.38825 * 130.57375 * 164.61944 * 19 18 17 21 21 C 1.38020 * 120.16176 * 180.32680 * 20 19 18 22 22 C 1.38318 * 119.29378 * 359.74282 * 21 20 19 23 23 C 1.37695 * 120.54484 * 0.36530 * 22 21 20 24 24 C 1.38895 * 108.27959 * 344.72416 * 19 18 17 25 25 H 1.08997 * 109.47080 * 175.03101 * 1 2 3 26 26 H 1.09000 * 109.47185 * 295.03771 * 1 2 3 27 27 H 1.09007 * 109.46758 * 55.03741 * 1 2 3 28 28 H 0.96998 * 119.99339 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00123 * 94.99973 * 12 2 1 30 30 H 1.08998 * 111.10207 * 209.98070 * 17 15 13 31 31 H 1.09001 * 111.09819 * 334.04049 * 17 15 13 32 32 H 1.08000 * 119.91515 * 0.34654 * 20 19 18 33 33 H 1.08001 * 120.35398 * 179.97438 * 21 20 19 34 34 H 1.08000 * 119.72959 * 180.11943 * 22 21 20 35 35 H 1.08003 * 119.47720 * 179.85192 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3581 7 7 2.7061 -0.6132 -3.4622 8 14 2.3138 1.8791 -2.3174 9 1 3.5993 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8582 1.1584 2.4117 15 6 2.6498 -0.7285 3.5875 16 1 1.9708 -1.5446 3.8345 17 6 4.0521 -1.3033 3.3059 18 16 5.1186 0.0724 3.8803 19 6 3.9524 0.7729 5.0193 20 6 4.1326 1.6879 6.0477 21 6 3.0585 2.0866 6.8173 22 6 1.8042 1.5692 6.5487 23 6 1.6258 0.6599 5.5301 24 6 2.6987 0.2446 4.7393 25 1 -0.3633 -1.0238 -0.0890 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 0.5889 -0.8423 28 1 2.9365 -0.1049 -4.2555 29 1 2.2490 -1.6318 1.1527 30 1 4.2300 -2.2072 3.8884 31 1 4.1926 -1.4913 2.2414 32 1 5.1156 2.0889 6.2457 33 1 3.1953 2.7980 7.6184 34 1 0.9585 1.8778 7.1452 35 1 0.6393 0.2651 5.3369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079908871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = -11.920757 kcal Electronic energy + Delta-G solvation = -19058.606996 eV Core-core repulsion = 16147.391508 eV Total energy + Delta-G solvation = -2911.215488 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03583 -38.48085 -35.04851 -34.37935 -32.37311 -30.87641 -30.22510 -28.94076 -25.39982 -24.96027 -22.83820 -22.23004 -20.49976 -19.55687 -17.82268 -17.51716 -16.28027 -15.82054 -15.57306 -15.32197 -14.70852 -14.45845 -14.11574 -13.52531 -13.47565 -12.96488 -12.72056 -12.66069 -12.52798 -12.35533 -12.30218 -11.63016 -11.42279 -11.16556 -11.05013 -10.83203 -10.60096 -10.16168 -9.90265 -9.67995 -9.29910 -9.23583 -8.81104 -8.71239 -8.15384 -7.36655 -6.26624 -4.30679 1.14357 1.31930 1.56665 2.24716 3.11118 3.26108 3.33429 3.40912 3.53350 4.00228 4.30728 4.34013 4.52488 4.81584 4.96178 4.97695 5.13841 5.27352 5.28303 5.38526 5.50516 5.53727 5.74855 5.92669 6.23260 6.30340 6.31019 6.44763 6.47496 6.63845 6.84347 6.90065 7.13848 7.33004 7.50078 8.07785 8.49885 8.72917 8.89096 9.35505 10.84927 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.024664 B = 0.005251 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.985991 B = 5331.442052 C = 5566.546040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.539 6.539 15 C -0.082 4.082 16 H 0.117 0.883 17 C -0.081 4.081 18 S -0.139 6.139 19 C -0.069 4.069 20 C -0.093 4.093 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.076 4.076 24 C -0.074 4.074 25 H 0.047 0.953 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.392 0.608 30 H 0.108 0.892 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -0.645 18.798 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.524 5.524 8 Si 0.699 3.301 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.351 5.351 13 C 0.294 3.706 14 O -0.416 6.416 15 C -0.104 4.104 16 H 0.135 0.865 17 C -0.229 4.229 18 S 0.103 5.897 19 C -0.181 4.181 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.144 4.144 23 C -0.096 4.096 24 C -0.080 4.080 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.226 0.774 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.762 0.468 18.147 18.238 hybrid contribution -1.129 0.185 0.108 1.150 sum 0.632 0.653 18.255 18.277 Atomic orbital electron populations 1.22218 0.98575 1.00565 0.99247 1.19145 0.90897 0.94392 0.82593 0.93169 1.20984 1.45438 0.95579 0.94904 0.90304 1.24923 0.93503 0.98596 0.95146 1.69878 1.44566 1.36227 1.01694 0.86919 0.79937 0.85878 0.77368 1.19716 1.21134 1.18522 1.46638 1.65040 1.13770 1.09642 1.20005 0.78945 0.87529 0.84137 1.90677 1.50597 1.15600 1.84735 1.20822 0.98017 0.98128 0.93452 0.86536 1.24401 0.93114 0.98593 1.06820 1.86131 1.22296 1.33250 1.48005 1.22037 0.95856 1.01398 0.98856 1.20349 0.99579 0.97447 0.94264 1.21042 0.92435 0.99513 0.99349 1.20899 0.97484 0.97674 0.98300 1.20747 0.97579 0.96997 0.94310 1.20219 0.93484 0.98820 0.95504 0.93389 0.95298 0.92873 0.92189 0.77426 0.87352 0.85603 0.85691 0.85315 0.85699 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.47 37.16 0.35 -2.84 16 2 C 0.23 5.45 2.22 -69.08 -0.15 5.30 16 3 H 0.05 1.31 4.73 -51.93 -0.25 1.07 16 4 C -0.53 -14.03 9.05 -34.44 -0.31 -14.34 16 5 H 0.08 2.17 8.06 -52.48 -0.42 1.75 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 8 Si 0.87 21.69 26.99 -169.99 -4.59 17.11 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.26 -6.42 6.82 56.52 0.39 -6.03 16 12 N -0.70 -13.65 4.71 -54.93 -0.26 -13.91 16 13 C 0.51 9.68 7.04 -10.99 -0.08 9.60 16 14 O -0.54 -12.47 15.68 5.56 0.09 -12.38 16 15 C -0.08 -1.17 2.93 -92.24 -0.27 -1.44 16 16 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.08 -1.03 6.99 37.76 0.26 -0.76 16 18 S -0.14 -2.10 23.06 -107.50 -2.48 -4.58 16 19 C -0.07 -1.04 6.48 -39.12 -0.25 -1.30 16 20 C -0.09 -1.20 10.05 -39.44 -0.40 -1.60 16 21 C -0.10 -1.16 10.08 -39.63 -0.40 -1.56 16 22 C -0.12 -1.43 10.00 -39.75 -0.40 -1.82 16 23 C -0.08 -1.03 9.97 -39.27 -0.39 -1.42 16 24 C -0.07 -1.12 4.46 -103.79 -0.46 -1.58 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.17 8.14 -51.92 -0.42 0.74 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.39 6.52 8.11 -40.82 -0.33 6.18 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.13 1.64 7.18 -51.93 -0.37 1.27 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -32.53 308.96 -8.73 -41.27 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.33 Total: 4.52 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.60 Total: -11.55 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.51 Total: -39.04 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.59 Total: 17.11 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.48 Total: -4.58 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.53 -8.73 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079908871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.345 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds