Wall clock time and date at job start Mon Mar 30 2020 02:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00247 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47614 * 119.99582 * 8 6 4 11 11 H 1.48497 * 109.46911 * 239.99550 * 8 6 4 12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1 15 15 H 1.08998 * 110.96645 * 335.69303 * 14 12 2 16 16 C 1.54147 * 111.09631 * 211.57066 * 14 12 2 17 17 C 1.50941 * 110.47160 * 213.77963 * 16 14 12 18 18 C 1.39594 * 126.80379 * 200.17917 * 17 16 14 19 19 C 1.37703 * 121.05182 * 180.61133 * 18 17 16 20 20 C 1.38320 * 120.54345 * 359.97438 * 19 18 17 21 21 C 1.38028 * 119.29152 * 359.88186 * 20 19 18 22 22 C 1.38821 * 120.16271 * 0.02562 * 21 20 19 23 23 S 1.77435 * 130.57242 * 180.23993 * 22 21 20 24 24 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 25 25 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 26 26 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 27 27 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 28 28 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 29 29 H 0.96995 * 120.00744 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.27510 * 334.02478 * 16 14 12 31 31 H 1.08996 * 109.28260 * 93.46018 * 16 14 12 32 32 H 1.07993 * 119.47581 * 0.60785 * 18 17 16 33 33 H 1.08001 * 119.73236 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.35682 * 179.89983 * 20 19 18 35 35 H 1.08003 * 119.91970 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5543 3.6176 -0.6731 8 14 3.4387 3.4165 -3.4338 9 1 2.8616 2.4161 -4.3672 10 1 2.8017 4.7373 -3.6675 11 1 4.9014 3.5243 -3.6668 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0051 15 1 0.3888 -2.3454 0.4279 16 6 2.1721 -3.5640 0.7569 17 6 1.9339 -4.9149 0.1270 18 6 2.1340 -6.1619 0.7216 19 6 1.8887 -7.3266 0.0292 20 6 1.4358 -7.2856 -1.2772 21 6 1.2288 -6.0623 -1.8821 22 6 1.4743 -4.8882 -1.1833 23 16 1.3009 -3.1930 -1.6780 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5139 29 1 4.0311 4.4434 -0.8502 30 1 3.2365 -3.3317 0.7182 31 1 1.8483 -3.5891 1.7974 32 1 2.4870 -6.2141 1.7409 33 1 2.0504 -8.2799 0.5102 34 1 1.2459 -8.2009 -1.8180 35 1 0.8749 -6.0185 -2.9015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106064353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:57 Heat of formation + Delta-G solvation = -3.438749 kcal Electronic energy + Delta-G solvation = -18615.208819 eV Core-core repulsion = 15704.361138 eV Total energy + Delta-G solvation = -2910.847681 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62939 -38.92171 -35.06772 -34.32722 -32.63217 -30.98416 -29.95030 -27.80238 -26.01021 -24.78567 -23.22878 -22.40589 -21.17689 -18.74252 -17.66725 -16.84278 -16.56522 -15.87479 -15.58654 -15.18672 -15.08581 -14.33756 -14.19129 -13.74395 -13.50045 -12.97754 -12.86785 -12.57199 -12.39271 -12.24020 -12.10871 -11.76080 -11.36598 -11.20526 -11.14380 -10.88803 -10.61365 -10.20910 -10.13846 -9.81215 -9.63795 -9.16532 -8.88208 -8.45612 -7.75662 -7.38703 -6.06571 -4.11299 1.03420 1.18408 1.35277 2.19810 3.30126 3.37766 3.42137 3.48824 3.52122 3.69128 4.39838 4.43910 4.57270 4.77950 4.84840 4.89493 5.06835 5.20458 5.28487 5.36231 5.47481 5.59352 5.62751 5.77561 5.84183 5.99636 6.15483 6.16458 6.19508 6.32332 6.73699 6.94800 7.35687 7.44283 7.89536 8.18888 8.25173 8.79944 8.96839 9.54026 11.01661 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.004295 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.323062 B = 6517.240514 C = 6835.283167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.525 3.475 13 O -0.521 6.521 14 C -0.087 4.087 15 H 0.120 0.880 16 C -0.080 4.080 17 C -0.097 4.097 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.088 4.088 22 C -0.085 4.085 23 S -0.091 6.091 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -18.935 2.894 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.324 5.324 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.308 3.692 13 O -0.397 6.397 14 C -0.218 4.218 15 H 0.138 0.862 16 C -0.118 4.118 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.144 4.144 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.198 4.198 23 S 0.153 5.847 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.579 -18.006 1.785 19.618 hybrid contribution 0.203 -0.213 0.162 0.336 sum -7.377 -18.219 1.948 19.752 Atomic orbital electron populations 1.21749 0.81200 1.03026 1.00722 1.48112 1.06370 1.07455 1.70437 1.19374 0.92568 0.77592 0.97816 1.21461 1.36592 1.06351 0.92189 0.92273 1.24927 0.95239 0.96323 0.97537 1.69937 1.38379 1.14354 1.30711 0.86431 0.78143 0.78316 0.84527 1.19692 1.20923 1.20811 1.19238 0.87685 0.83770 0.78538 1.90687 1.13169 1.86295 1.49599 1.24244 1.03921 0.97595 0.96088 0.86223 1.20892 1.03500 0.87729 0.99662 1.20889 1.00136 0.95165 0.94068 1.20798 0.99978 0.90691 1.00008 1.20930 1.00574 0.97911 0.94963 1.21063 0.99423 0.97036 0.95203 1.20405 1.00870 0.90117 0.99858 1.22283 1.03533 0.97165 0.96807 1.86472 1.91269 0.96820 1.10151 0.93327 0.90210 0.92278 0.94637 0.93640 0.92723 0.86820 0.88963 0.85899 0.85705 0.85280 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.88 59.85 0.59 1.81 16 2 N -0.59 -12.56 2.86 -182.96 -0.52 -13.08 16 3 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 4 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.53 10.98 6.89 -10.98 -0.08 10.90 16 13 O -0.52 -13.05 15.39 5.56 0.09 -12.96 16 14 C -0.09 -1.38 2.92 -27.29 -0.08 -1.46 16 15 H 0.12 1.57 6.44 -51.93 -0.33 1.24 16 16 C -0.08 -1.14 5.83 -27.17 -0.16 -1.30 16 17 C -0.10 -1.30 5.98 -103.76 -0.62 -1.92 16 18 C -0.09 -1.04 9.97 -39.27 -0.39 -1.43 16 19 C -0.12 -1.17 10.00 -39.75 -0.40 -1.57 16 20 C -0.11 -1.03 10.08 -39.63 -0.40 -1.43 16 21 C -0.09 -1.04 10.05 -39.44 -0.40 -1.44 16 22 C -0.09 -1.20 6.48 -39.13 -0.25 -1.46 16 23 S -0.09 -1.49 22.54 -107.50 -2.42 -3.91 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 26 H 0.06 0.81 6.44 -51.92 -0.33 0.48 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 28 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.11 1.86 6.93 -51.93 -0.36 1.50 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -33.26 311.03 -9.42 -42.68 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.33 Total: -2.03 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.63 Total: -6.61 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.90 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.42 Total: -3.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.26 -9.42 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106064353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.241 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds