Wall clock time and date at job start Mon Mar 30 2020 02:38:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46499 * 120.00136 * 2 1
4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1
5 5 H 1.07997 * 120.00010 * 359.97438 * 4 3 2
6 6 C 1.37875 * 120.00091 * 180.02562 * 4 3 2
7 7 N 1.31517 * 120.00149 * 359.97438 * 6 4 3
8 8 Si 1.86797 * 120.00247 * 179.97438 * 6 4 3
9 9 H 1.48498 * 109.47151 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47614 * 119.99582 * 8 6 4
11 11 H 1.48497 * 109.46911 * 239.99550 * 8 6 4
12 12 C 1.34784 * 119.99971 * 180.02562 * 2 1 3
13 13 O 1.21283 * 119.99649 * 179.97438 * 12 2 1
14 14 C 1.50697 * 119.99774 * 359.72768 * 12 2 1
15 15 H 1.08998 * 110.96645 * 335.69303 * 14 12 2
16 16 C 1.54147 * 111.09631 * 211.57066 * 14 12 2
17 17 C 1.50941 * 110.47160 * 213.77963 * 16 14 12
18 18 C 1.39594 * 126.80379 * 200.17917 * 17 16 14
19 19 C 1.37703 * 121.05182 * 180.61133 * 18 17 16
20 20 C 1.38320 * 120.54345 * 359.97438 * 19 18 17
21 21 C 1.38028 * 119.29152 * 359.88186 * 20 19 18
22 22 C 1.38821 * 120.16271 * 0.02562 * 21 20 19
23 23 S 1.77435 * 130.57242 * 180.23993 * 22 21 20
24 24 H 1.08999 * 109.47256 * 269.99572 * 1 2 3
25 25 H 1.08998 * 109.47416 * 29.99674 * 1 2 3
26 26 H 1.09008 * 109.47058 * 150.00274 * 1 2 3
27 27 H 1.08997 * 109.46865 * 30.00228 * 3 2 1
28 28 H 1.08998 * 109.47058 * 149.99741 * 3 2 1
29 29 H 0.96995 * 120.00744 * 180.02562 * 7 6 4
30 30 H 1.09006 * 109.27510 * 334.02478 * 16 14 12
31 31 H 1.08996 * 109.28260 * 93.46018 * 16 14 12
32 32 H 1.07993 * 119.47581 * 0.60785 * 18 17 16
33 33 H 1.08001 * 119.73236 * 180.02562 * 19 18 17
34 34 H 1.08000 * 120.35682 * 179.89983 * 20 19 18
35 35 H 1.08003 * 119.91970 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7038 -1.4208
5 1 2.0980 1.0959 -2.2417
6 6 3.1268 2.8775 -1.6727
7 7 3.5543 3.6176 -0.6731
8 14 3.4387 3.4165 -3.4338
9 1 2.8616 2.4161 -4.3672
10 1 2.8017 4.7373 -3.6675
11 1 4.9014 3.5243 -3.6668
12 6 2.1389 -1.1673 -0.0005
13 8 3.3517 -1.1672 -0.0010
14 6 1.3854 -2.4723 0.0051
15 1 0.3888 -2.3454 0.4279
16 6 2.1721 -3.5640 0.7569
17 6 1.9339 -4.9149 0.1270
18 6 2.1340 -6.1619 0.7216
19 6 1.8887 -7.3266 0.0292
20 6 1.4358 -7.2856 -1.2772
21 6 1.2288 -6.0623 -1.8821
22 6 1.4743 -4.8882 -1.1833
23 16 1.3009 -3.1930 -1.6780
24 1 -0.3634 -0.0001 1.0276
25 1 -0.3634 0.8900 -0.5138
26 1 -0.3633 -0.8901 -0.5138
27 1 1.6084 2.0283 0.5139
28 1 3.1499 1.1383 0.5139
29 1 4.0311 4.4434 -0.8502
30 1 3.2365 -3.3317 0.7182
31 1 1.8483 -3.5891 1.7974
32 1 2.4870 -6.2141 1.7409
33 1 2.0504 -8.2799 0.5102
34 1 1.2459 -8.2009 -1.8180
35 1 0.8749 -6.0185 -2.9015
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000106064353.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:57
Heat of formation + Delta-G solvation = -3.438749 kcal
Electronic energy + Delta-G solvation = -18615.208819 eV
Core-core repulsion = 15704.361138 eV
Total energy + Delta-G solvation = -2910.847681 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 277.088 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.62939 -38.92171 -35.06772 -34.32722 -32.63217 -30.98416 -29.95030 -27.80238
-26.01021 -24.78567 -23.22878 -22.40589 -21.17689 -18.74252 -17.66725 -16.84278
-16.56522 -15.87479 -15.58654 -15.18672 -15.08581 -14.33756 -14.19129 -13.74395
-13.50045 -12.97754 -12.86785 -12.57199 -12.39271 -12.24020 -12.10871 -11.76080
-11.36598 -11.20526 -11.14380 -10.88803 -10.61365 -10.20910 -10.13846 -9.81215
-9.63795 -9.16532 -8.88208 -8.45612 -7.75662 -7.38703 -6.06571 -4.11299
1.03420 1.18408 1.35277 2.19810 3.30126 3.37766 3.42137 3.48824
3.52122 3.69128 4.39838 4.43910 4.57270 4.77950 4.84840 4.89493
5.06835 5.20458 5.28487 5.36231 5.47481 5.59352 5.62751 5.77561
5.84183 5.99636 6.15483 6.16458 6.19508 6.32332 6.73699 6.94800
7.35687 7.44283 7.89536 8.18888 8.25173 8.79944 8.96839 9.54026
11.01661
Molecular weight = 277.09amu
Principal moments of inertia in cm(-1)
A = 0.031058 B = 0.004295 C = 0.004095
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 901.323062 B = 6517.240514 C = 6835.283167
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.077 3.923
2 N -0.592 5.592
3 C 0.245 3.755
4 C -0.527 4.527
5 H 0.059 0.941
6 C 0.062 3.938
7 N -0.895 5.895
8 Si 0.898 3.102
9 H -0.272 1.272
10 H -0.283 1.283
11 H -0.282 1.282
12 C 0.525 3.475
13 O -0.521 6.521
14 C -0.087 4.087
15 H 0.120 0.880
16 C -0.080 4.080
17 C -0.097 4.097
18 C -0.095 4.095
19 C -0.123 4.123
20 C -0.107 4.107
21 C -0.088 4.088
22 C -0.085 4.085
23 S -0.091 6.091
24 H 0.048 0.952
25 H 0.079 0.921
26 H 0.059 0.941
27 H 0.036 0.964
28 H 0.046 0.954
29 H 0.263 0.737
30 H 0.114 0.886
31 H 0.092 0.908
32 H 0.123 0.877
33 H 0.125 0.875
34 H 0.129 0.871
35 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.159 -18.935 2.894 20.821
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.324 5.324
3 C 0.127 3.873
4 C -0.566 4.566
5 H 0.077 0.923
6 C -0.140 4.140
7 N -0.534 5.534
8 Si 0.726 3.274
9 H -0.197 1.197
10 H -0.209 1.209
11 H -0.208 1.208
12 C 0.308 3.692
13 O -0.397 6.397
14 C -0.218 4.218
15 H 0.138 0.862
16 C -0.118 4.118
17 C -0.103 4.103
18 C -0.115 4.115
19 C -0.144 4.144
20 C -0.127 4.127
21 C -0.112 4.112
22 C -0.198 4.198
23 S 0.153 5.847
24 H 0.067 0.933
25 H 0.098 0.902
26 H 0.077 0.923
27 H 0.054 0.946
28 H 0.064 0.936
29 H 0.073 0.927
30 H 0.132 0.868
31 H 0.110 0.890
32 H 0.141 0.859
33 H 0.143 0.857
34 H 0.147 0.853
35 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -7.579 -18.006 1.785 19.618
hybrid contribution 0.203 -0.213 0.162 0.336
sum -7.377 -18.219 1.948 19.752
Atomic orbital electron populations
1.21749 0.81200 1.03026 1.00722 1.48112 1.06370 1.07455 1.70437
1.19374 0.92568 0.77592 0.97816 1.21461 1.36592 1.06351 0.92189
0.92273 1.24927 0.95239 0.96323 0.97537 1.69937 1.38379 1.14354
1.30711 0.86431 0.78143 0.78316 0.84527 1.19692 1.20923 1.20811
1.19238 0.87685 0.83770 0.78538 1.90687 1.13169 1.86295 1.49599
1.24244 1.03921 0.97595 0.96088 0.86223 1.20892 1.03500 0.87729
0.99662 1.20889 1.00136 0.95165 0.94068 1.20798 0.99978 0.90691
1.00008 1.20930 1.00574 0.97911 0.94963 1.21063 0.99423 0.97036
0.95203 1.20405 1.00870 0.90117 0.99858 1.22283 1.03533 0.97165
0.96807 1.86472 1.91269 0.96820 1.10151 0.93327 0.90210 0.92278
0.94637 0.93640 0.92723 0.86820 0.88963 0.85899 0.85705 0.85280
0.85564
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.22 9.88 59.85 0.59 1.81 16
2 N -0.59 -12.56 2.86 -182.96 -0.52 -13.08 16
3 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16
4 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16
5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16
6 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16
7 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16
8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16
9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
12 C 0.53 10.98 6.89 -10.98 -0.08 10.90 16
13 O -0.52 -13.05 15.39 5.56 0.09 -12.96 16
14 C -0.09 -1.38 2.92 -27.29 -0.08 -1.46 16
15 H 0.12 1.57 6.44 -51.93 -0.33 1.24 16
16 C -0.08 -1.14 5.83 -27.17 -0.16 -1.30 16
17 C -0.10 -1.30 5.98 -103.76 -0.62 -1.92 16
18 C -0.09 -1.04 9.97 -39.27 -0.39 -1.43 16
19 C -0.12 -1.17 10.00 -39.75 -0.40 -1.57 16
20 C -0.11 -1.03 10.08 -39.63 -0.40 -1.43 16
21 C -0.09 -1.04 10.05 -39.44 -0.40 -1.44 16
22 C -0.09 -1.20 6.48 -39.13 -0.25 -1.46 16
23 S -0.09 -1.49 22.54 -107.50 -2.42 -3.91 16
24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16
26 H 0.06 0.81 6.44 -51.92 -0.33 0.48 16
27 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16
28 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16
29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
30 H 0.11 1.86 6.93 -51.93 -0.36 1.50 16
31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16
35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16
LS Contribution 311.03 15.07 4.69 4.69
Total: -1.00 -33.26 311.03 -9.42 -42.68
By element:
Atomic # 1 Polarization: 2.30 SS G_CDS: -4.33 Total: -2.03 kcal
Atomic # 6 Polarization: -3.98 SS G_CDS: -2.63 Total: -6.61 kcal
Atomic # 7 Polarization: -39.12 SS G_CDS: 0.21 Total: -38.90 kcal
Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Atomic # 16 Polarization: -1.49 SS G_CDS: -2.42 Total: -3.91 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -33.26 -9.42 -42.68 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000106064353.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.241 kcal
(2) G-P(sol) polarization free energy of solvation -33.258 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.983 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds